AT1G66510

AAR2 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009578
Physical Location & Seq
Forward (+)
24812793 .. 24816620
3828 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66510.4

Sequence Viewer

Length: 1200 bp
ATGGATTCTGAGAAGGCACTAGAGCTTGTGAAGCATGGAGCTACACTTCTATTTCTCGATGTTCCTCAATATACACTGGTCGGAATCGATACTCAGATATTCGCAGTTGGACCAGCTTTCAAAGGGATTAAGATGATACCTCCTGGAATTCACTTTGTATTCTATAGTTCATCGACAAGGGATGGTAGAGAGTTTTCACCCACCATTGGCTTCTTTGTTGATGTTGCCCCTTCTCAGGTTATTGTACGCAAATGGAATCAGCAAGACGAGTGGTTAACCAAAGTGTCTGAAGAAGAGGAAGAGAGATATTCTCAAGCAGTCAGGTCTTTAGAGTTTGACAAAAATCTTGGCCCATACAATTTAAAGCAATATGGGGAGTGGAGGCACTTATCTAACTACATTACAAAGGATGTTGTTGAAAAGTTTGAGCCAGTTGGAGGAGAAATAACAGTCACATATGAATCTGCTATTCTAAAAGGTGGACCTAAAACGGCAATGGAAATAGCACTTGATACGCAGATGAAAAAAAGCAAGTTTACGACATCATCTACTGAGCAACCTAAAGGGAATAGGTTTTACTACACGTCTATTCCTCGGATTATAAAGCACAAGGGAATGTCTGGACAGGAGCTAACCTCTATGAATCTTGACAAGACTCAATTGCTAGAAAGCGTATTGTCAAAAGAGTACAAAGACTCGGAAGACTTGCTACTTGGGGAGCTACAATTTTCATTTGTTGCATTTTTGATGGGACAGTCTCTTGAATCGTTCATGCAGTGGAAGTCCATAGTTAGTCTTTTACTGGGCTGCACCAGTGCGCCCTTTCAGACGAGGAGTCAGCTATTTACAAAGTTCATCAAAGTCATCTACCACCAACTAAAATATGGACTACAAAAAGAGAATAGTGGTCCTGAGACGGGCATTCATGCGCTTCTTGATGATTCTTGGCTAGCTTCAGATAGCTTTCTGCATTTCCTTTGTAAGGACTTCTTTGCATTAGTGGAAGAGACGTCTGTAGTTGATGGAGATTTATTGTCATGGACAAGGAAGTTCAAAGAGTTGCTTGAGAACAGATTAGGATGGGAGTTTCAGAAGAAGAGCGCTGTTGACGGGATTTACTTTGAAGAAGATGATGAGTATGCTCCTGTGGTTGAGATGTTGGATGAAAGTCATGGAGAATATATGGATAAAACCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAR2

Protein Analysis

399

Amino Acids

45.61

Weight (kDa)

5.08

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAR2_1st PF20981 13 - 144 1.5e-45 AAR2 N-terminal domain
AAR2 PF05282 194 - 364 6.9e-47 AAR2 C-terminal repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 602
AatII GACGTC 1 cut(s) 1013
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 2 cut(s) 309, 939
AcyI GRCGYC 1 cut(s) 1010
AfaI GTAC 2 cut(s) 246, 689
AfeI AGCGCT 1 cut(s) 1102
AfiI CCNNNNNNNGG 5 cut(s) 206, 235, 437, 917, 982
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 5 cut(s) 121, 419, 764, 1054, 1124
AhdI GACNNNNNGTC 1 cut(s) 834
AjiI CACGTC 1 cut(s) 585
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 8 cut(s) 25, 41, 116, 631, 721, 841, 953, 963
AluI AGCT 8 cut(s) 25, 41, 116, 631, 721, 841, 953, 963
Alw26I GTCTC 3 cut(s) 762, 908, 1001
Aor51HI AGCGCT 1 cut(s) 1102
AoxI GGCC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 807
ApoI RAATTY 1 cut(s) 147
AspLEI GCGC 3 cut(s) 820, 931, 1103
AspS9I GGNCC 4 cut(s) 110, 350, 482, 908
AsuHPI GGTGA 1 cut(s) 189
AsuNHI GCTAGC 1 cut(s) 949
AvaII GGWCC 3 cut(s) 110, 482, 908
BarI GAAGNNNNNNTAC 2 cut(s) 693, 725
BbsI GAAGAC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 794
BccI CCATC 4 cut(s) 176, 742, 1016, 1074
BceAI ACGGC 1 cut(s) 507
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 762, 908, 1001
BfaI CTAG 3 cut(s) 20, 665, 950
BfmI CTRYAG 2 cut(s) 163, 1014
BfoI RGCGCY 1 cut(s) 1104
BisI GCNGC 1 cut(s) 808
BlsI GCNGC 1 cut(s) 809
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 3 cut(s) 110, 482, 908
BmeRI GACNNNNNGTC 1 cut(s) 834
BmgBI CACGTC 1 cut(s) 585
BmgT120I GGNCC 4 cut(s) 110, 350, 482, 908
BmrFI CCNGG 1 cut(s) 144
BmrI ACTGGG 1 cut(s) 812
BmtI GCTAGC 1 cut(s) 953
BmuI ACTGGG 1 cut(s) 812
BpiI GAAGAC 1 cut(s) 708
BplI GAGNNNNNCTC 4 cut(s) 295, 327, 620, 652
BpuEI CTTGAG 2 cut(s) 297, 1085
Bsa29I ATCGAT 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 1010
BsaJI CCNNGG 1 cut(s) 593
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 235, 437, 917, 982
Bse1I ACTGG 4 cut(s) 81, 431, 807, 813
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 593
BseGI GGATG 4 cut(s) 187, 415, 1085, 1168
BseLI CCNNNNNNNGG 5 cut(s) 206, 235, 437, 917, 982
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 4 cut(s) 107, 248, 543, 903
BseNI ACTGG 4 cut(s) 81, 431, 807, 813
BseRI GAGGAG 2 cut(s) 453, 847
BseXI GCAGC 1 cut(s) 794
BsgI GTGCAG 1 cut(s) 793
BshFI GGCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 87
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 5 cut(s) 206, 235, 437, 917, 982
BsmAI GTCTC 3 cut(s) 762, 908, 1001
BsmBI CGTCTC 2 cut(s) 908, 1001
BsmFI GGGAC 1 cut(s) 765
BsmI GAATGC 1 cut(s) 921
BsnI GGCC 1 cut(s) 351
BspANI GGCC 1 cut(s) 351
BspCNI CTCAG 4 cut(s) 106, 247, 544, 904
BspDI ATCGAT 1 cut(s) 87
BspOI GCTAGC 1 cut(s) 953
BspQI GCTCTTC 1 cut(s) 1091
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 4 cut(s) 81, 431, 807, 813
BssECI CCNNGG 1 cut(s) 593
BssNI GRCGYC 1 cut(s) 1010
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 451, 756
Bst6I CTCTTC 4 cut(s) 288, 294, 999, 1091
BstACI GRCGYC 1 cut(s) 1010
BstC8I GCNNGC 1 cut(s) 951
BstDEI CTNAG 6 cut(s) 9, 93, 234, 552, 912, 1197
BstENI CCTNNNNNAGG 1 cut(s) 980
BstF5I GGATG 4 cut(s) 187, 415, 1085, 1168
BstH2I RGCGCY 1 cut(s) 1104
BstHHI GCGC 3 cut(s) 820, 931, 1103
BstMAI GTCTC 3 cut(s) 762, 908, 1001
BstMWI GCNNNNNNNGC 1 cut(s) 31
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 2 cut(s) 163, 1014
BstV1I GCAGC 1 cut(s) 794
BstV2I GAAGAC 1 cut(s) 708
Bsu15I ATCGAT 1 cut(s) 87
BsuRI GGCC 1 cut(s) 351
BsuTUI ATCGAT 1 cut(s) 87
BtrI CACGTC 1 cut(s) 585
BtsCI GGATG 4 cut(s) 187, 415, 1085, 1168
BtsI GCAGTG 1 cut(s) 782
BtsIMutI CAGTG 3 cut(s) 74, 782, 820
Cac8I GCNNGC 1 cut(s) 951
CfoI GCGC 3 cut(s) 820, 931, 1103
Cfr13I GGNCC 4 cut(s) 110, 350, 482, 908
ClaI ATCGAT 1 cut(s) 87
Csp6I GTAC 2 cut(s) 245, 688
CspCI CAANNNNNGTGG 2 cut(s) 251, 286
CviAII CATG 5 cut(s) 35, 772, 926, 1038, 1172
CviQI GTAC 2 cut(s) 245, 688
DdeI CTNAG 6 cut(s) 9, 93, 234, 552, 912, 1197
DraI TTTAAA 1 cut(s) 363
DriI GACNNNNNGTC 1 cut(s) 834
Eam1104I CTCTTC 4 cut(s) 288, 294, 999, 1091
Eam1105I GACNNNNNGTC 1 cut(s) 834
EarI CTCTTC 4 cut(s) 288, 294, 999, 1091
Eco47I GGWCC 3 cut(s) 110, 482, 908
Eco47III AGCGCT 1 cut(s) 1102
Eco57I CTGAAG 2 cut(s) 309, 939
EcoNI CCTNNNNNAGG 1 cut(s) 980
EcoRI GAATTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 142
Esp3I CGTCTC 2 cut(s) 908, 1001
FaeI CATG 5 cut(s) 38, 775, 929, 1041, 1175
FalI AAGNNNNNCTT 4 cut(s) 974, 1006, 1047, 1079
FaqI GGGAC 1 cut(s) 765
FatI CATG 5 cut(s) 34, 771, 925, 1037, 1171
FauNDI CATATG 1 cut(s) 457
Fnu4HI GCNGC 1 cut(s) 808
FokI GGATG 4 cut(s) 194, 422, 1092, 1175
Fsp4HI GCNGC 1 cut(s) 808
FspBI CTAG 3 cut(s) 20, 665, 950
GlaI GCGC 3 cut(s) 819, 930, 1102
GluI GCNGC 1 cut(s) 808
HaeII RGCGCY 1 cut(s) 1104
HaeIII GGCC 1 cut(s) 351
HhaI GCGC 3 cut(s) 820, 931, 1103
Hin1I GRCGYC 1 cut(s) 1010
Hin1II CATG 5 cut(s) 38, 775, 929, 1041, 1175
Hin6I GCGC 3 cut(s) 818, 929, 1101
HinP1I GCGC 3 cut(s) 818, 929, 1101
HincII GTYRAC 2 cut(s) 276, 1108
HindII GTYRAC 2 cut(s) 276, 1108
HpaI GTTAAC 1 cut(s) 276
HphI GGTGA 1 cut(s) 189
Hpy166II GTNNAC 4 cut(s) 276, 482, 537, 1108
Hpy188I TCNGA 9 cut(s) 10, 83, 96, 289, 597, 700, 828, 958, 1092
Hpy188III TCNNGA 6 cut(s) 56, 621, 647, 761, 911, 935
Hpy8I GTNNAC 4 cut(s) 276, 482, 537, 1108
HpyAV CCTTC 2 cut(s) 7, 240
HpyCH4III ACNGT 2 cut(s) 451, 756
HpyCH4IV ACGT 2 cut(s) 584, 1010
HpyCH4V TGCA 5 cut(s) 740, 775, 810, 970, 995
HpyF10VI GCNNNNNNNGC 1 cut(s) 31
HpyF3I CTNAG 6 cut(s) 9, 93, 234, 552, 912, 1197
HpySE526I ACGT 2 cut(s) 584, 1010
Hsp92I GRCGYC 1 cut(s) 1010
Hsp92II CATG 5 cut(s) 38, 775, 929, 1041, 1175
HspAI GCGC 3 cut(s) 818, 929, 1101
KspAI GTTAAC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 1091
LmnI GCTCC 4 cut(s) 38, 628, 718, 1147
Lsp1109I GCAGC 1 cut(s) 794
MaeI CTAG 3 cut(s) 20, 665, 950
MaeII ACGT 2 cut(s) 584, 1010
MaeIII GTNAC 1 cut(s) 451
MboII GAAGA 9 cut(s) 302, 305, 311, 713, 1016, 1105, 1108, 1136, 1139
MfeI CAATTG 1 cut(s) 659
MluCI AATT 4 cut(s) 147, 358, 659, 725
MlyI GAGTC 3 cut(s) 649, 689, 844
MmeI TCCRAC 4 cut(s) 61, 88, 415, 1140
MnlI CCTC 8 cut(s) 75, 150, 289, 375, 431, 603, 646, 825
MseI TTAA 3 cut(s) 129, 275, 362
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 1 cut(s) 659
Mva1269I GAATGC 1 cut(s) 921
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 31
NdeI CATATG 1 cut(s) 457
NheI GCTAGC 1 cut(s) 949
NlaIII CATG 5 cut(s) 38, 775, 929, 1041, 1175
NmuCI GTSAC 1 cut(s) 451
PciSI GCTCTTC 1 cut(s) 1091
PctI GAATGC 1 cut(s) 921
PfeI GAWTC 7 cut(s) 5, 84, 256, 461, 643, 764, 941
PfoI TCCNGGA 1 cut(s) 142
PkrI GCNGC 1 cut(s) 809
PleI GAGTC 3 cut(s) 649, 689, 843
PpsI GAGTC 3 cut(s) 649, 689, 843
PsiI TTATAA 1 cut(s) 602
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspPI GGNCC 4 cut(s) 110, 350, 482, 908
RsaI GTAC 2 cut(s) 246, 689
RsaNI GTAC 2 cut(s) 245, 688
SapI GCTCTTC 1 cut(s) 1091
SaqAI TTAA 3 cut(s) 129, 275, 362
SatI GCNGC 1 cut(s) 808
Sau96I GGNCC 4 cut(s) 110, 350, 482, 908
SchI GAGTC 3 cut(s) 649, 689, 844
ScrFI CCNGG 1 cut(s) 144
SfcI CTRYAG 2 cut(s) 163, 1014
SinI GGWCC 3 cut(s) 110, 482, 908
SmlI CTYRAG 2 cut(s) 312, 1064
SmoI CTYRAG 2 cut(s) 312, 1064
Sse9I AATT 4 cut(s) 147, 358, 659, 725
SspMI CTAG 3 cut(s) 20, 665, 950
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 451, 756
TaiI ACGT 2 cut(s) 587, 1013
TaqI TCGA 3 cut(s) 57, 87, 173
TasI AATT 4 cut(s) 147, 358, 659, 725
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 7 cut(s) 5, 84, 256, 461, 643, 764, 941
Tru1I TTAA 3 cut(s) 129, 275, 362
Tru9I TTAA 3 cut(s) 129, 275, 362
TscAI CASTG 3 cut(s) 81, 782, 820
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 807
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 9 cut(s) 159, 474, 536, 656, 720, 760, 844, 914, 1179
TspRI CASTG 3 cut(s) 81, 782, 820
VpaK11BI GGWCC 3 cut(s) 110, 482, 908
XagI CCTNNNNNAGG 1 cut(s) 980
XapI RAATTY 1 cut(s) 147
XcmI CCANNNNNNNNNTGG 1 cut(s) 881
XspI CTAG 3 cut(s) 20, 665, 950
ZraI GACGTC 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.