Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009578

Physical Location & Seq

Genomic Coordinates Forward (+)

12288863 .. 12296215

Gene Structure 7353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022793

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGATGCGGAAACGGCAGTGGAGCTTGCGAAGCAGGGCTCGACGCTTCTGCTGCTGGACGTTCCTCAACACACCCTCATCGGCATCGATACTGACATGGTTTCTGTCGGCCCCGCCTTTAAAGGCATCAAGATGATCCCTCCCGGTCCTCATTTCCTCTACTATTCCTCTTCCACCAGAGACGGAAAGGATTTCTCACCTATTACTGCCTTTTTCGTTTGTTCCGCACCATCTGAGGTAATTGTACGCAAGTGGGATGAACAAGAGGAGAGATTAGTGAAACTACCACAAGAGGAGGAAGAGAGATATTGCCGAGCTGTTAGGAGTTGGGAGTTTGACAGATATCTCGGTCCTTATAATCTGAGCCAGTATAGAGATTGGAAACGATTGTCTAGTTACATTACAAAGAGCACCATTGAACGGCTCGAACCCATTGGAGGAGAAATTACTGTTGCTTCTGAATCTTCCCTGCACAAATTCACTCCTAAAACAGCCAAGGAGAGTGCTCTGGATGAGCAGTTGAAGGCTAGTACGTTCTCAACATCCAGTGACACATCGAATGCTAGAGGATGCTACTACACATCAATTCCACATGTTATCAAACATAAAGGAATCGATGTCCAGCAGCTTACTTCTTTGAATCTTGACAAGACACAATTGTTAGAAAGTGTACTACAAAAGGAATATAATGGTTCTGAGGACATGCTTCTTGGGGAGCTGCAATTTGCCTTCATTGCATTTTTGATGGGACAATCACTTGAAGCATTTCTGCAGTGGAAGTCTTTGGTCAATCTTTTATTTGGATGTACTGAAGCTCCTTTCCATACAAGGAGTCGGCTATTTGTAAAGTTCATTAAAGTCATCTACTATCAACTGAAACATGCGCTTAAGAAAGATTGCACAGATGCAAGTGGTGCATCAGCCTTGTTAGATGATTCATGGTTTTCTGCTGACAGCTTTTTGTTTCATCTTTTTAAGGAATTCTTTTTACTGCTGCAAGATGCCTCAATTGTTGACGGAGATCTTTTGTCATGGACAAGGAAACTCAAGGCGTTGCTAGAAAGCAATTTTGGATGGCAATTCGAGCAGAACAGTGCAGTTGATGGGATACATTTTGAAGAGGATGATGAGTTTGCCCCTGTTGTTCGGATACTGGATGACCCAAGTTTGAGTGAAGCCTCATTAGCTTACCTGCTTCTCATAATAACAACCAACTTCCAACTAGAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAR2

Protein Analysis

411

Amino Acids

46.51

Weight (kDa)

4.99

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAR2_1st	PF20981	13 - 144	5.3e-44	AAR2 N-terminal domain
AAR2	PF05282	193 - 362	2e-43	AAR2 C-terminal repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66510 AT1G66510 AT1G66510 AT1G66510
fragaria_vesca	FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040
malus_domestica	MD09G1261000.v1.1
prunus_persica	Prupe.3G158200_v2.0.a1 Prupe.3G158200_v2.0.a1
pyrus_communis	pycom09g17530
rosa_chinensis	RchiOBHm_Chr3g0492101
rosa_laevigata	RLG00000022793
rosa_multiflora	Rmu_sc0003579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392530
rosa_rugosa	Rorug03G0252000
rosa_samantha	Rh3BG338000 Rh3CG335500 Rh3DG337600
rosa_wichuraiana	Rw3G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	1200
AciI	CCGC	3 cut(s)	8, 114, 225
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	2 cut(s)	476, 980
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	4 cut(s)	246, 532, 672, 808
AfiI	CCNNNNNNNGG	2 cut(s)	420, 437
AflII	CTTAAG	1 cut(s)	887
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	5 cut(s)	419, 523, 640, 761, 1118
AjuI	GAANNNNNNNTTGG	2 cut(s)	1053, 1085
AluBI	AGCT	7 cut(s)	25, 317, 628, 718, 815, 957, 1187
AluI	AGCT	7 cut(s)	25, 317, 628, 718, 815, 957, 1187
Alw21I	GWGCWC	2 cut(s)	413, 508
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	130
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	4 cut(s)	52, 625, 718, 994
ApoI	RAATTY	2 cut(s)	476, 980
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	886
AspS9I	GGNCC	3 cut(s)	110, 146, 350
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	189
AvaII	GGWCC	2 cut(s)	146, 350
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	413, 508
BbvI	GCAGC	4 cut(s)	39, 637, 705, 981
BccI	CCATC	4 cut(s)	238, 739, 1068, 1097
BceAI	ACGGC	2 cut(s)	30, 437
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciVI	GTATCC	2 cut(s)	1101, 1143
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	5 cut(s)	393, 528, 564, 1058, 1223
BfmI	CTRYAG	1 cut(s)	770
BfrI	CTTAAG	1 cut(s)	887
BfuAI	ACCTGC	1 cut(s)	1200
BfuI	GTATCC	2 cut(s)	1101, 1143
BglII	AGATCT	1 cut(s)	1021
BisI	GCNGC	4 cut(s)	53, 626, 719, 995
BlsI	GCNGC	4 cut(s)	54, 627, 720, 996
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	146, 350
BmgT120I	GGNCC	3 cut(s)	110, 146, 350
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	6 cut(s)	93, 135, 560, 895, 926, 991
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	1 cut(s)	144
Bsa29I	ATCGAT	2 cut(s)	87, 615
BsaJI	CCNNGG	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	420, 437
Bse1I	ACTGG	3 cut(s)	367, 546, 1158
Bse3DI	GCAATG	1 cut(s)	732
BseCI	ATCGAT	2 cut(s)	87, 615
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	9 cut(s)	10, 262, 517, 542, 575, 809, 1079, 1129, 1162
BseLI	CCNNNNNNNGG	2 cut(s)	420, 437
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	3 cut(s)	225, 353, 687
BseNI	ACTGG	3 cut(s)	367, 546, 1158
BseRI	GAGGAG	3 cut(s)	281, 308, 453
BseXI	GCAGC	4 cut(s)	39, 637, 705, 981
BsgI	GTGCAG	2 cut(s)	455, 1116
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	2 cut(s)	87, 615
BsiHKAI	GWGCWC	2 cut(s)	413, 508
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	762
BslI	CCNNNNNNNGG	2 cut(s)	420, 437
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	762
BsmI	GAATGC	1 cut(s)	565
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	3 cut(s)	41, 413, 508
Bsp143I	GATC	2 cut(s)	135, 1021
BspACI	CCGC	3 cut(s)	8, 114, 225
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	226, 354, 688
BspDI	ATCGAT	2 cut(s)	87, 615
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	774
BspMI	ACCTGC	1 cut(s)	1200
BspPI	GGATC	1 cut(s)	130
BspTI	CTTAAG	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	3 cut(s)	367, 546, 1158
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	2 cut(s)	135, 1021
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	2 cut(s)	451, 1094
Bst6I	CTCTTC	3 cut(s)	175, 294, 1113
BstAFI	CTTAAG	1 cut(s)	887
BstAPI	GCANNNNNTGC	1 cut(s)	914
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	234, 362, 696
BstF5I	GGATG	9 cut(s)	10, 262, 517, 542, 575, 809, 1079, 1129, 1162
BstHHI	GCGC	1 cut(s)	886
BstKTI	GATC	2 cut(s)	138, 1024
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	2 cut(s)	135, 1021
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 31, 52, 734, 914, 1084, 1184
BstNSI	RCATGY	3 cut(s)	596, 706, 884
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	770
BstV1I	GCAGC	4 cut(s)	39, 637, 705, 981
BstX2I	RGATCY	1 cut(s)	1021
BstYI	RGATCY	1 cut(s)	1021
Bsu15I	ATCGAT	2 cut(s)	87, 615
BsuI	GTATCC	2 cut(s)	1101, 1143
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	2 cut(s)	87, 615
BtsCI	GGATG	9 cut(s)	10, 262, 517, 542, 575, 809, 1079, 1129, 1162
BtsI	GCAGTG	2 cut(s)	24, 779
BtsIMutI	CAGTG	4 cut(s)	24, 553, 779, 1099
BveI	ACCTGC	1 cut(s)	1200
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	886
Cfr13I	GGNCC	3 cut(s)	110, 146, 350
ClaI	ATCGAT	2 cut(s)	87, 615
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	245, 531, 671, 807
CviAII	CATG	6 cut(s)	97, 593, 703, 881, 939, 1032
CviQI	GTAC	4 cut(s)	245, 531, 671, 807
DdeI	CTNAG	3 cut(s)	234, 362, 696
DpnI	GATC	2 cut(s)	137, 1023
DpnII	GATC	2 cut(s)	135, 1021
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	3 cut(s)	175, 294, 1113
EarI	CTCTTC	3 cut(s)	175, 294, 1113
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	344
Eco47I	GGWCC	2 cut(s)	146, 350
Eco57I	CTGAAG	1 cut(s)	831
EcoRI	GAATTC	1 cut(s)	980
EcoRV	GATATC	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	6 cut(s)	100, 596, 706, 884, 942, 1035
FalI	AAGNNNNNCTT	2 cut(s)	968, 1000
FaqI	GGGAC	1 cut(s)	762
FatI	CATG	6 cut(s)	96, 592, 702, 880, 938, 1031
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	53, 626, 719, 995
FokI	GGATG	9 cut(s)	17, 269, 524, 529, 582, 816, 1086, 1136, 1169
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	4 cut(s)	53, 626, 719, 995
FspBI	CTAG	5 cut(s)	393, 528, 564, 1058, 1223
GlaI	GCGC	1 cut(s)	885
GluI	GCNGC	4 cut(s)	53, 626, 719, 995
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	886
Hin1II	CATG	6 cut(s)	100, 596, 706, 884, 942, 1035
Hin6I	GCGC	1 cut(s)	884
HinP1I	GCGC	1 cut(s)	884
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HinfI	GANTC	5 cut(s)	461, 612, 640, 832, 935
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	671, 1015
Hpy188I	TCNGA	5 cut(s)	235, 363, 460, 697, 1149
Hpy188III	TCNNGA	3 cut(s)	130, 509, 644
Hpy8I	GTNNAC	2 cut(s)	671, 1015
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	517, 739
HpyCH4III	ACNGT	2 cut(s)	451, 1094
HpyCH4IV	ACGT	2 cut(s)	60, 533
HpyCH4V	TGCA	9 cut(s)	472, 721, 737, 772, 900, 908, 917, 997, 1097
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 31, 52, 734, 914, 1084, 1184
HpyF3I	CTNAG	3 cut(s)	234, 362, 696
HpySE526I	ACGT	2 cut(s)	60, 533
Hsp92II	CATG	6 cut(s)	100, 596, 706, 884, 942, 1035
HspAI	GCGC	1 cut(s)	884
Kzo9I	GATC	2 cut(s)	135, 1021
LmnI	GCTCC	3 cut(s)	22, 715, 820
Lsp1109I	GCAGC	4 cut(s)	39, 637, 705, 981
LweI	GCATC	6 cut(s)	93, 135, 560, 895, 926, 991
MaeI	CTAG	5 cut(s)	393, 528, 564, 1058, 1223
MaeII	ACGT	2 cut(s)	60, 533
MaeIII	GTNAC	2 cut(s)	395, 548
MalI	GATC	2 cut(s)	137, 1023
MboI	GATC	2 cut(s)	135, 1021
MboII	GAAGA	4 cut(s)	162, 311, 456, 1130
MfeI	CAATTG	2 cut(s)	656, 1008
MflI	RGATCY	1 cut(s)	1021
MhlI	GDGCHC	3 cut(s)	41, 413, 508
MlyI	GAGTC	1 cut(s)	841
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	5 cut(s)	120, 855, 888, 975, 1231
MslI	CAYNNNNRTG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	2 cut(s)	656, 1008
Mva1269I	GAATGC	1 cut(s)	565
MwoI	GCNNNNNNNGC	7 cut(s)	14, 31, 52, 734, 914, 1084, 1184
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	135, 1021
NlaIII	CATG	6 cut(s)	100, 596, 706, 884, 942, 1035
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	548
NspI	RCATGY	3 cut(s)	596, 706, 884
PciI	ACATGT	1 cut(s)	592
PctI	GAATGC	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	4 cut(s)	461, 612, 640, 935
PkrI	GCNGC	4 cut(s)	54, 627, 720, 996
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
PscI	ACATGT	1 cut(s)	592
PsiI	TTATAA	1 cut(s)	357
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	110, 146, 350
PstI	CTGCAG	1 cut(s)	774
PsuI	RGATCY	1 cut(s)	1021
RsaI	GTAC	4 cut(s)	246, 532, 672, 808
RsaNI	GTAC	4 cut(s)	245, 531, 671, 807
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	5 cut(s)	120, 855, 888, 975, 1231
SatI	GCNGC	4 cut(s)	53, 626, 719, 995
Sau3AI	GATC	2 cut(s)	135, 1021
Sau96I	GGNCC	3 cut(s)	110, 146, 350
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	3 cut(s)	41, 413, 508
SfaNI	GCATC	6 cut(s)	93, 135, 560, 895, 926, 991
SfcI	CTRYAG	1 cut(s)	770
SinI	GGWCC	2 cut(s)	146, 350
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	887, 1046
SmoI	CTYRAG	2 cut(s)	887, 1046
SsiI	CCGC	3 cut(s)	8, 114, 225
SspMI	CTAG	5 cut(s)	393, 528, 564, 1058, 1223
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	2 cut(s)	451, 1094
TaiI	ACGT	2 cut(s)	63, 536
TaqI	TCGA	6 cut(s)	41, 87, 426, 557, 615, 1083
TaqII	GACCGA	1 cut(s)	338
TatI	WGTACW	2 cut(s)	670, 806
TfiI	GAWTC	4 cut(s)	461, 612, 640, 935
Tru1I	TTAA	5 cut(s)	120, 855, 888, 975, 1231
Tru9I	TTAA	5 cut(s)	120, 855, 888, 975, 1231
TscAI	CASTG	4 cut(s)	24, 553, 779, 1099
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	4 cut(s)	52, 625, 718, 994
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	5 cut(s)	273, 721, 841, 927, 956
TspGWI	ACGGA	2 cut(s)	198, 1032
TspRI	CASTG	4 cut(s)	24, 553, 779, 1099
Vha464I	CTTAAG	1 cut(s)	887
VpaK11BI	GGWCC	2 cut(s)	146, 350
XapI	RAATTY	2 cut(s)	476, 980
XceI	RCATGY	3 cut(s)	596, 706, 884
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	5 cut(s)	393, 528, 564, 1058, 1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.