Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003579.1

Orthogroup ID

OG0009578

Physical Location & Seq

Genomic Coordinates Reverse (-)

300 .. 7516

Gene Structure 7217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003579.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atggatgcgggaacggcggtggagcttgcgaagcagggctcgacgcttctgctactggacgttcctcaacacaccctcatcggcatcgatactcacatgctttccgtcggccccgcctttaaaggcatcaagatgatccctcccggtcctcatttcctctactattcctcttccaccaggtactcactctttgctctcttcacttgttgctcctcctcctcctcctcctcctcatttgtttttgctcgctccaattctaaatcctttgtgcttgctcaaagagacggaaaggatttctcacctattaccggctttttcgtttgttccgcgccatctgaggtaattgtacgcaagtgggatcaacaagaggagcgattagtcaaactaccacaagaagaagaggaagagagatattgccgagctgttaggagttgggagtttgacagatatctcggtccttataatctgagccagtatggagattggaaacgattgtctagttacattacaaagagcaccattgaacggctcgaacccattggaggagaaattactgttgcttctgaatcttccctgcacaaattcactcctaaaacagccaaggagaatgctctagatgagcagttgaaggctagtacgttctcaacatccagtgacatgtcaaatgctagaggatgctactacacatcaattccacatgttatcaaacataaaggaatcgatgtccagcagcttacttctttgaatcttgacaagacacaattgttagaaagtgtactacaaaaggaatataatggttctgaggacatgcttcttgaggagctgcaatttgccttcattgcatttttgatgggacaatcacttgaagcatttctgcagtggaagtctttggtcaatcttttatttggatgtactgaagctcctttccatacaaggagtcggctatttgtaaagttcattaaagtcatctactatcaactgaaacatgcgcttaagaaagattgcacagatgcaagtggtgcatcagccttgttagatgattcatggttttctgctgacagctttttgtatcatctttttaaggaattctttttactgctgcaagatgcctcaattgttgacggagatcttctgtcatggacgaggaaactcaaggcgttgctagaaagcaattttggatggcaattcgagcagaacagtgcagttgatgggatacattttgaagaggatgatgagtttgctcctgttgttgtcatgttggatgacccaagttcgactgaagtaccaagattctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAR2

Protein Analysis

431

Amino Acids

48.76

Weight (kDa)

5.26

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66510 AT1G66510 AT1G66510 AT1G66510
fragaria_vesca	FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040
malus_domestica	MD09G1261000.v1.1
prunus_persica	Prupe.3G158200_v2.0.a1 Prupe.3G158200_v2.0.a1
pyrus_communis	pycom09g17530
rosa_chinensis	RchiOBHm_Chr3g0492101
rosa_laevigata	RLG00000022793
rosa_multiflora	Rmu_sc0003579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392530
rosa_rugosa	Rorug03G0252000
rosa_samantha	Rh3BG338000 Rh3CG335500 Rh3DG337600
rosa_wichuraiana	Rw3G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	462
AccII	CGCG	1 cut(s)	329
AciI	CCGC	4 cut(s)	8, 17, 114, 327
AclWI	GGATC	2 cut(s)	130, 366
AcsI	RAATTY	2 cut(s)	581, 1085
AcuI	CTGAAG	1 cut(s)	936
AfaI	GTAC	6 cut(s)	182, 348, 637, 777, 913, 1284
AfiI	CCNNNNNNNGG	3 cut(s)	308, 525, 542
AflII	CTTAAG	1 cut(s)	992
AflIII	ACRYGT	2 cut(s)	657, 697
AgsI	TTSAA	5 cut(s)	524, 628, 745, 866, 1223
AjnI	CCWGG	1 cut(s)	176
AjuI	GAANNNNNNNTTGG	2 cut(s)	1158, 1190
AluBI	AGCT	6 cut(s)	25, 422, 733, 823, 920, 1062
AluI	AGCT	6 cut(s)	25, 422, 733, 823, 920, 1062
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	1 cut(s)	276
AlwI	GGATC	2 cut(s)	130, 366
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	3 cut(s)	730, 823, 1099
ApoI	RAATTY	2 cut(s)	581, 1085
Asp700I	GAANNNNTTC	1 cut(s)	870
AspLEI	GCGC	2 cut(s)	331, 991
AspS9I	GGNCC	3 cut(s)	110, 146, 455
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	291
AvaII	GGWCC	2 cut(s)	146, 455
BaeI	ACNNNNGTAYC	1 cut(s)	1266
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	3 cut(s)	742, 810, 1086
BccI	CCATC	4 cut(s)	340, 844, 1173, 1202
BceAI	ACGGC	2 cut(s)	30, 542
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciT130I	CCWGG	1 cut(s)	178
BciVI	GTATCC	1 cut(s)	1206
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	276
BfaI	CTAG	5 cut(s)	498, 614, 633, 669, 1163
BfmI	CTRYAG	1 cut(s)	875
BfrI	CTTAAG	1 cut(s)	992
BfuI	GTATCC	1 cut(s)	1206
BglII	AGATCT	1 cut(s)	1126
BisI	GCNGC	3 cut(s)	731, 824, 1100
BlsI	GCNGC	3 cut(s)	732, 825, 1101
Bme1390I	CCNGG	2 cut(s)	144, 178
Bme18I	GGWCC	2 cut(s)	146, 455
BmgT120I	GGNCC	3 cut(s)	110, 146, 455
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	144, 178
BmsI	GCATC	6 cut(s)	93, 135, 665, 1000, 1031, 1096
BpuEI	CTTGAG	2 cut(s)	836, 1136
BpuMI	CCSGG	1 cut(s)	144
Bsa29I	ATCGAT	2 cut(s)	87, 720
BsaJI	CCNNGG	1 cut(s)	600
BsaXI	ACNNNNNCTCC	2 cut(s)	904, 934
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 525, 542
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	3 cut(s)	60, 472, 651
Bse3DI	GCAATG	1 cut(s)	837
BseBI	CCWGG	1 cut(s)	178
BseCI	ATCGAT	2 cut(s)	87, 720
BseDI	CCNNGG	1 cut(s)	600
BseGI	GGATG	7 cut(s)	10, 647, 680, 914, 1184, 1234, 1267
BseLI	CCNNNNNNNGG	3 cut(s)	308, 525, 542
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	3 cut(s)	327, 458, 792
BseNI	ACTGG	3 cut(s)	60, 472, 651
BseXI	GCAGC	3 cut(s)	742, 810, 1086
BsgI	GTGCAG	2 cut(s)	560, 1221
Bsh1236I	CGCG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	2 cut(s)	87, 720
BsiHKAI	GWGCWC	1 cut(s)	518
BsiSI	CCGG	2 cut(s)	144, 309
BslFI	GGGAC	1 cut(s)	867
BslI	CCNNNNNNNGG	3 cut(s)	308, 525, 542
BsmAI	GTCTC	1 cut(s)	276
BsmBI	CGTCTC	1 cut(s)	276
BsmFI	GGGAC	1 cut(s)	867
BsmI	GAATGC	1 cut(s)	613
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	41, 518
Bsp143I	GATC	3 cut(s)	135, 358, 1126
BspACI	CCGC	4 cut(s)	8, 17, 114, 327
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	328, 459, 793
BspDI	ATCGAT	2 cut(s)	87, 720
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	879
BspPI	GGATC	2 cut(s)	130, 366
BspTI	CTTAAG	1 cut(s)	992
BsrDI	GCAATG	1 cut(s)	837
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	3 cut(s)	60, 472, 651
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	600
BssMI	GATC	3 cut(s)	135, 358, 1126
BssT1I	CCWWGG	1 cut(s)	600
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	2 cut(s)	556, 1199
Bst6I	CTCTTC	5 cut(s)	175, 203, 393, 399, 1218
BstAFI	CTTAAG	1 cut(s)	992
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	27, 247, 273
BstDEI	CTNAG	3 cut(s)	336, 467, 801
BstF5I	GGATG	7 cut(s)	10, 647, 680, 914, 1184, 1234, 1267
BstFNI	CGCG	1 cut(s)	329
BstHHI	GCGC	2 cut(s)	331, 991
BstKTI	GATC	3 cut(s)	138, 361, 1129
BstMAI	GTCTC	1 cut(s)	276
BstMBI	GATC	3 cut(s)	135, 358, 1126
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 31, 839, 1019, 1189
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	5 cut(s)	100, 661, 701, 811, 989
BstSCI	CCNGG	2 cut(s)	142, 176
BstSFI	CTRYAG	1 cut(s)	875
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	742, 810, 1086
BstX2I	RGATCY	1 cut(s)	1126
BstYI	RGATCY	1 cut(s)	1126
Bsu15I	ATCGAT	2 cut(s)	87, 720
BsuI	GTATCC	1 cut(s)	1206
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	2 cut(s)	87, 720
BtsCI	GGATG	7 cut(s)	10, 647, 680, 914, 1184, 1234, 1267
BtsI	GCAGTG	1 cut(s)	884
BtsIMutI	CAGTG	3 cut(s)	658, 884, 1204
Cac8I	GCNNGC	3 cut(s)	27, 247, 273
CfoI	GCGC	2 cut(s)	331, 991
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	110, 146, 455
ClaI	ATCGAT	2 cut(s)	87, 720
CseI	GACGC	1 cut(s)	52
CsiI	ACCWGGT	1 cut(s)	176
Csp6I	GTAC	6 cut(s)	181, 347, 636, 776, 912, 1283
CviAII	CATG	8 cut(s)	97, 658, 698, 808, 986, 1044, 1137, 1255
CviQI	GTAC	6 cut(s)	181, 347, 636, 776, 912, 1283
DdeI	CTNAG	3 cut(s)	336, 467, 801
DpnI	GATC	3 cut(s)	137, 360, 1128
DpnII	GATC	3 cut(s)	135, 358, 1126
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	5 cut(s)	175, 203, 393, 399, 1218
EarI	CTCTTC	5 cut(s)	175, 203, 393, 399, 1218
Eco130I	CCWWGG	1 cut(s)	600
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	449
Eco47I	GGWCC	2 cut(s)	146, 455
Eco57I	CTGAAG	1 cut(s)	936
EcoRI	GAATTC	1 cut(s)	1085
EcoRII	CCWGG	1 cut(s)	176
EcoRV	GATATC	1 cut(s)	449
EcoT14I	CCWWGG	1 cut(s)	600
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	600
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	8 cut(s)	100, 661, 701, 811, 989, 1047, 1140, 1258
FalI	AAGNNNNNCTT	2 cut(s)	1073, 1105
FaqI	GGGAC	1 cut(s)	867
FatI	CATG	8 cut(s)	96, 657, 697, 807, 985, 1043, 1136, 1254
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	731, 824, 1100
FokI	GGATG	7 cut(s)	17, 634, 687, 921, 1191, 1241, 1274
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	731, 824, 1100
FspBI	CTAG	5 cut(s)	498, 614, 633, 669, 1163
GlaI	GCGC	2 cut(s)	330, 990
GluI	GCNGC	3 cut(s)	731, 824, 1100
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	144, 309
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	331, 991
Hin1II	CATG	8 cut(s)	100, 661, 701, 811, 989, 1047, 1140, 1258
Hin6I	GCGC	2 cut(s)	329, 989
HinP1I	GCGC	2 cut(s)	329, 989
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HinfI	GANTC	6 cut(s)	566, 717, 745, 937, 1040, 1290
HpaII	CCGG	2 cut(s)	144, 309
HphI	GGTGA	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	776, 1120
Hpy188I	TCNGA	4 cut(s)	337, 468, 565, 802
Hpy188III	TCNNGA	4 cut(s)	130, 614, 749, 815
Hpy8I	GTNNAC	2 cut(s)	776, 1120
Hpy99I	CGWCG	2 cut(s)	46, 110
HpyAV	CCTTC	2 cut(s)	622, 844
HpyCH4III	ACNGT	2 cut(s)	556, 1199
HpyCH4IV	ACGT	2 cut(s)	60, 638
HpyCH4V	TGCA	9 cut(s)	577, 826, 842, 877, 1005, 1013, 1022, 1102, 1202
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 31, 839, 1019, 1189
HpyF3I	CTNAG	3 cut(s)	336, 467, 801
HpySE526I	ACGT	2 cut(s)	60, 638
Hsp92II	CATG	8 cut(s)	100, 661, 701, 811, 989, 1047, 1140, 1258
HspAI	GCGC	2 cut(s)	329, 989
Kzo9I	GATC	3 cut(s)	135, 358, 1126
LmnI	GCTCC	7 cut(s)	22, 215, 254, 370, 820, 925, 1246
Lsp1109I	GCAGC	3 cut(s)	742, 810, 1086
LweI	GCATC	6 cut(s)	93, 135, 665, 1000, 1031, 1096
MabI	ACCWGGT	1 cut(s)	176
MaeI	CTAG	5 cut(s)	498, 614, 633, 669, 1163
MaeII	ACGT	2 cut(s)	60, 638
MaeIII	GTNAC	2 cut(s)	500, 653
MalI	GATC	3 cut(s)	137, 360, 1128
MboI	GATC	3 cut(s)	135, 358, 1126
MboII	GAAGA	8 cut(s)	162, 190, 407, 410, 416, 561, 1121, 1235
MfeI	CAATTG	2 cut(s)	761, 1113
MflI	RGATCY	1 cut(s)	1126
MhlI	GDGCHC	2 cut(s)	41, 518
MlyI	GAGTC	1 cut(s)	946
MmeI	TCCRAC	1 cut(s)	1239
MroXI	GAANNNNTTC	1 cut(s)	870
MseI	TTAA	4 cut(s)	120, 960, 993, 1080
MslI	CAYNNNNRTG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	992
MspI	CCGG	2 cut(s)	144, 309
MspR9I	CCNGG	2 cut(s)	144, 178
MunI	CAATTG	2 cut(s)	761, 1113
Mva1269I	GAATGC	1 cut(s)	613
MvaI	CCWGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	5 cut(s)	14, 31, 839, 1019, 1189
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	135, 358, 1126
NlaIII	CATG	8 cut(s)	100, 661, 701, 811, 989, 1047, 1140, 1258
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	443
NmuCI	GTSAC	1 cut(s)	653
NspI	RCATGY	5 cut(s)	100, 661, 701, 811, 989
PciI	ACATGT	2 cut(s)	657, 697
PctI	GAATGC	1 cut(s)	613
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	5 cut(s)	566, 717, 745, 1040, 1290
PkrI	GCNGC	3 cut(s)	732, 825, 1101
PleI	GAGTC	1 cut(s)	945
PpsI	GAGTC	1 cut(s)	945
PscI	ACATGT	2 cut(s)	657, 697
PsiI	TTATAA	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	110, 146, 455
PstI	CTGCAG	1 cut(s)	879
PsuI	RGATCY	1 cut(s)	1126
RsaI	GTAC	6 cut(s)	182, 348, 637, 777, 913, 1284
RsaNI	GTAC	6 cut(s)	181, 347, 636, 776, 912, 1283
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	120, 960, 993, 1080
SatI	GCNGC	3 cut(s)	731, 824, 1100
Sau3AI	GATC	3 cut(s)	135, 358, 1126
Sau96I	GGNCC	3 cut(s)	110, 146, 455
SchI	GAGTC	1 cut(s)	946
ScrFI	CCNGG	2 cut(s)	144, 178
SduI	GDGCHC	2 cut(s)	41, 518
SexAI	ACCWGGT	1 cut(s)	176
SfaNI	GCATC	6 cut(s)	93, 135, 665, 1000, 1031, 1096
SfcI	CTRYAG	1 cut(s)	875
SinI	GGWCC	2 cut(s)	146, 455
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	3 cut(s)	815, 992, 1151
SmoI	CTYRAG	3 cut(s)	815, 992, 1151
SsiI	CCGC	4 cut(s)	8, 17, 114, 327
SspMI	CTAG	5 cut(s)	498, 614, 633, 669, 1163
StyD4I	CCNGG	2 cut(s)	142, 176
StyI	CCWWGG	1 cut(s)	600
TaaI	ACNGT	2 cut(s)	556, 1199
TaiI	ACGT	2 cut(s)	63, 641
TaqI	TCGA	6 cut(s)	41, 87, 531, 720, 1188, 1274
TaqII	GACCGA	1 cut(s)	443
TatI	WGTACW	2 cut(s)	775, 911
TfiI	GAWTC	5 cut(s)	566, 717, 745, 1040, 1290
Tru1I	TTAA	4 cut(s)	120, 960, 993, 1080
Tru9I	TTAA	4 cut(s)	120, 960, 993, 1080
TscAI	CASTG	3 cut(s)	658, 884, 1204
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	3 cut(s)	730, 823, 1099
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	3 cut(s)	826, 946, 1032
TspGWI	ACGGA	3 cut(s)	94, 300, 1137
TspRI	CASTG	3 cut(s)	658, 884, 1204
Vha464I	CTTAAG	1 cut(s)	992
VpaK11BI	GGWCC	2 cut(s)	146, 455
XapI	RAATTY	2 cut(s)	581, 1085
XbaI	TCTAGA	1 cut(s)	613
XceI	RCATGY	5 cut(s)	100, 661, 701, 811, 989
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	5 cut(s)	498, 614, 633, 669, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.