Rorug03G0252000

Protein AAR2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009578
Physical Location & Seq
Forward (+)
23848304 .. 23850832
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0252000.1

Sequence Viewer

Length: 798 bp
ATGGCTGAACATAGAGACCGAACACCACAAAATAGAGCAAGTCGACAGTCATTCGATGAGAAGATGAAAAGCTACAAAGGGATGATTAGTCCACATGTAATGTTGAGGTTGAATAGGACACCATTCTGGGAGATCATTTATGTCTTCCATCACGGACTTTTAAAAGACAATGAATGCAGAAAAGTAGATGAGGACATTCATAGAATGGTCAAGACATACGATGTCAATCAGAAAGGGTTTCTGCTTGGGGAAATGATACAAAAAATAACCCGTGAAGATGTAGCTATCTGCCTTGGAATGCGATTGGAAGGAGTCACATTCGAGCTAAACAAGCACCACCAGAAGCCAACGAAGAATCGGATGATCGACAAGTATTTTGGAGATGCAAAGAAAGTGACAAAAGCGATGATCGATAGTGCACTTGCCGAATCTTTGAAAGACCCAAAGAATCAAGTCCCAAGTGAGGTGGCATCGCTAATCGTCATGAATCTGTTCGTATCCTTCTTGTTCTGCACCTCAGGTTCTACATTGTCCTGGAAGTTGGTAGAAATTGGCACCGAATGGAATTCTTGGCGACGATATTCATGGGCAACCTTGGTATTAGACCATCTACACAATGGTCTAAGTAAGAAGCAGGAAGACAAAGATGTCAATTTGTCAGCTGAGAAGACAAAGATGGGAGGAGCAATCAAGAGAAATGAATTAGGGTCGCCATATTTCATAAGATGGTCACTCGTCGAGCTGCACAAAGAAATGGAGAAACTAACCAATGAGCAGATAGAGGAAATGTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAR2

Protein Analysis

265

Amino Acids

30.95

Weight (kDa)

8.79

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 81 - 221 2.1e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
AccB1I GGYRCC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 565
AfiI CCNNNNNNNGG 1 cut(s) 463
AflIII ACRYGT 1 cut(s) 94
AgsI TTSAA 2 cut(s) 112, 436
AjnI CCWGG 1 cut(s) 533
AluBI AGCT 5 cut(s) 72, 284, 325, 662, 742
AluI AGCT 5 cut(s) 72, 284, 325, 662, 742
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 417
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 742
ApoI RAATTY 1 cut(s) 565
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
Asp700I GAANNNNTTC 1 cut(s) 491
AxyI CCTNAGG 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 554
BbsI GAAGAC 3 cut(s) 136, 645, 674
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 729
BccI CCATC 4 cut(s) 156, 615, 670, 720
BciT130I CCWGG 1 cut(s) 535
BciVI GTATCC 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 9
BfuI GTATCC 1 cut(s) 508
BisI GCNGC 1 cut(s) 743
BlsI GCNGC 1 cut(s) 744
Bme1390I CCNGG 1 cut(s) 535
BmiI GGNNCC 1 cut(s) 556
BmrFI CCNGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 373, 479
BpiI GAAGAC 3 cut(s) 136, 645, 674
Bsa29I ATCGAT 1 cut(s) 411
BsaBI GATNNNNATC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 292, 594
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse21I CCTNAGG 1 cut(s) 517
Bse8I GATNNNNATC 1 cut(s) 225
BseBI CCWGG 1 cut(s) 535
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 292, 594
BseGI GGATG 2 cut(s) 87, 366
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 531, 654
BseRI GAGGAG 1 cut(s) 696
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 729
BsgI GTGCAG 2 cut(s) 496, 728
BshNI GGYRCC 1 cut(s) 554
BshVI ATCGAT 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 421
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 1 cut(s) 440
BsmI GAATGC 2 cut(s) 179, 303
Bso31I GGTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 3 cut(s) 132, 363, 408
BspCNI CTCAG 2 cut(s) 530, 655
BspDI ATCGAT 1 cut(s) 411
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 554
BspTNI GGTCTC 1 cut(s) 9
BssECI CCNNGG 2 cut(s) 292, 594
BssMI GATC 3 cut(s) 132, 363, 408
BssT1I CCWWGG 2 cut(s) 292, 594
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 1 cut(s) 48
BstDEI CTNAG 3 cut(s) 517, 623, 663
BstF5I GGATG 2 cut(s) 87, 366
BstKTI GATC 3 cut(s) 135, 366, 411
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 3 cut(s) 132, 363, 408
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 729
BstV2I GAAGAC 3 cut(s) 136, 645, 674
Bsu15I ATCGAT 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 517
BsuI GTATCC 1 cut(s) 508
BsuTUI ATCGAT 1 cut(s) 411
BtgZI GCGATG 2 cut(s) 419, 456
BtsCI GGATG 2 cut(s) 87, 366
CciI TCATGA 1 cut(s) 483
ClaI ATCGAT 1 cut(s) 411
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 3 cut(s) 95, 484, 585
CviJI RGCY 7 cut(s) 5, 72, 284, 325, 346, 662, 742
CviKI_1 RGCY 7 cut(s) 5, 72, 284, 325, 346, 662, 742
DdeI CTNAG 3 cut(s) 517, 623, 663
DpnI GATC 3 cut(s) 134, 365, 410
DpnII GATC 3 cut(s) 132, 363, 408
DraI TTTAAA 1 cut(s) 162
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eco130I CCWWGG 2 cut(s) 292, 594
Eco31I GGTCTC 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 517
EcoRI GAATTC 1 cut(s) 565
EcoRII CCWGG 1 cut(s) 533
EcoT14I CCWWGG 2 cut(s) 292, 594
ErhI CCWWGG 2 cut(s) 292, 594
FaeI CATG 3 cut(s) 98, 487, 588
FaiI YATR 9 cut(s) 12, 96, 141, 201, 217, 485, 586, 715, 722
FaqI GGGAC 1 cut(s) 440
FatI CATG 3 cut(s) 94, 483, 584
FblI GTMKAC 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 743
FokI GGATG 2 cut(s) 94, 373
Fsp4HI GCNGC 1 cut(s) 743
GluI GCNGC 1 cut(s) 743
Hin1II CATG 3 cut(s) 98, 487, 588
HincII GTYRAC 1 cut(s) 44
HindII GTYRAC 1 cut(s) 44
HinfI GANTC 5 cut(s) 312, 355, 428, 448, 487
Hpy166II GTNNAC 3 cut(s) 44, 92, 419
Hpy188I TCNGA 2 cut(s) 231, 360
Hpy188III TCNNGA 3 cut(s) 211, 484, 691
Hpy8I GTNNAC 3 cut(s) 44, 92, 419
Hpy99I CGWCG 2 cut(s) 579, 740
HpyAV CCTTC 2 cut(s) 302, 511
HpyCH4III ACNGT 1 cut(s) 48
HpyCH4V TGCA 5 cut(s) 177, 386, 419, 513, 745
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 3 cut(s) 517, 623, 663
Hsp92II CATG 3 cut(s) 98, 487, 588
Kzo9I GATC 3 cut(s) 132, 363, 408
LmnI GCTCC 1 cut(s) 683
LpnPI CCDG 6 cut(s) 112, 353, 504, 520, 547, 620
Lsp1109I GCAGC 1 cut(s) 729
LweI GCATC 2 cut(s) 373, 479
MaeIII GTNAC 3 cut(s) 313, 394, 729
MalI GATC 3 cut(s) 134, 365, 410
MboI GATC 3 cut(s) 132, 363, 408
MboII GAAGA 6 cut(s) 73, 136, 287, 364, 650, 679
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 4 cut(s) 549, 565, 652, 701
MlyI GAGTC 1 cut(s) 321
MnlI CCTC 6 cut(s) 99, 184, 457, 526, 674, 775
MroXI GAANNNNTTC 1 cut(s) 491
MseI TTAA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 662
MspR9I CCNGG 1 cut(s) 535
Mva1269I GAATGC 2 cut(s) 179, 303
MvaI CCWGG 1 cut(s) 535
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 3 cut(s) 132, 363, 408
NlaIII CATG 3 cut(s) 98, 487, 588
NlaIV GGNNCC 1 cut(s) 556
NmuCI GTSAC 3 cut(s) 313, 394, 729
NspI RCATGY 1 cut(s) 98
PagI TCATGA 1 cut(s) 483
PciI ACATGT 1 cut(s) 94
PctI GAATGC 2 cut(s) 179, 303
PdmI GAANNNNTTC 1 cut(s) 491
PfeI GAWTC 4 cut(s) 355, 428, 448, 487
PfoI TCCNGGA 1 cut(s) 533
PkrI GCNGC 1 cut(s) 744
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PscI ACATGT 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 533
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 662
SalI GTCGAC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 1 cut(s) 743
Sau3AI GATC 3 cut(s) 132, 363, 408
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 535
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 2 cut(s) 373, 479
Sse9I AATT 4 cut(s) 549, 565, 652, 701
StyD4I CCNGG 1 cut(s) 533
StyI CCWWGG 2 cut(s) 292, 594
TaaI ACNGT 1 cut(s) 48
TaqI TCGA 6 cut(s) 43, 54, 321, 366, 411, 738
TaqII GACCGA 1 cut(s) 33
TasI AATT 4 cut(s) 549, 565, 652, 701
TfiI GAWTC 4 cut(s) 355, 428, 448, 487
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseFI GTSAC 3 cut(s) 313, 394, 729
TseI GCWGC 1 cut(s) 742
Tsp45I GTSAC 3 cut(s) 313, 394, 729
TspDTI ATGAA 7 cut(s) 80, 186, 188, 500, 573, 709, 714
TspGWI ACGGA 1 cut(s) 168
VneI GTGCAC 1 cut(s) 417
XapI RAATTY 1 cut(s) 565
XceI RCATGY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 614
XmiI GTMKAC 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.