Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0009578

Physical Location & Seq

Genomic Coordinates Reverse (-)

37587573 .. 37594808

Gene Structure 7236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG337600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGATGCGGGAACGGCGGTGGAGCTTGCGAAGCAGGGCTCGACGCTTCTGCTGCTGGACGTTCCTCAACACACCCTCATCGGCATCGATACTCACATGGTTTCCGTCGGCCCCGCCTTTAAAGGCATCAAGATGATCCCTCCCGGTCCTCATTTCCTCTACTATTCCTCTTCCACCAGAGACGGAAAGGATTTCTCACCTATTACCGGCTTTTTCGTTTGTTCCGCACCATCTGAGGTAATTGTACGCAAGTGGGATCAACAAGAGGAGCGATTGGTGAAACTACCACAAGAAGAAGAGGAAGAGAGATATTGCCGAGCTGTTAGGAGTTGGGAGTTTGACAGATATCTCGGTCCTTATAATCTGAGCCAGTATGGAGATTGGAAACGATTGTCTAGTTACATTACAAAGAGCACCATTGAACGGCTCGAACCCATTGGAGGAGAAATTACTGTTGCTTCTGAATCTTCCCTGCACAAATTCACTCCTAAAACAGCCAAGGAGAATGCTCTAGATGAGCAGTTGAAGGCTAGTACGTTCTCAACATCCAGTGACACGTCAAATGCTAGAGGATGCTACTACACATCAATTCCACATGTTATCAAACATAAAGGAATCGATGTCCAGCAGCTTACTTCTTTGAATCTTGACAAGACACAATTGTTAGAAAGTGTACTACAAAAGGAATATAATGGTTCTGAGGACATGCTTCTTGGGGAGCTGCAATTTGCCTTCATTGCATTTTTGATGGGACAATCACTTGAAGCATTTCTGCAGTGGAAGTCTTTGGTCAATCTTTTATTTGGATGTACTGAAGCTCCTTTCCATACAAGGAGTCGGCTATTTGTAAAGTTCATTAAAGTCATCTACTATCAACTGAAACATGCGCTTAAGAAAGATTGCACAGATGCAAGTGGTGCATCAGCCTTGTTAGATGATTCATGGTTTTCTGCTGACAGCTTTTTGTATCATCTTTTTAAGGAATTCTTTTTACTGCTGCAAGATGCCTCAATTGTTGACGGAGATCTTCTGTCATGGACGAGGAAACTCAAGGCGTTGCTAAAAAGCAATTTTGGATGGCAATTCGAGCAGAACAGTGCAGTTGATGTGATACATTTTGAAGAGGATGATGAGTTTGCTCCTGTTGTTGTGATGTTGCATGACCCAAGTTCGAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAR2

Protein Analysis

393

Amino Acids

44.53

Weight (kDa)

5.44

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAR2_1st	PF20981	12 - 145	1.7e-45	AAR2 N-terminal domain
AAR2	PF05282	194 - 363	3.7e-44	AAR2 C-terminal repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66510 AT1G66510 AT1G66510 AT1G66510
fragaria_vesca	FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040
malus_domestica	MD09G1261000.v1.1
prunus_persica	Prupe.3G158200_v2.0.a1 Prupe.3G158200_v2.0.a1
pyrus_communis	pycom09g17530
rosa_chinensis	RchiOBHm_Chr3g0492101
rosa_laevigata	RLG00000022793
rosa_multiflora	Rmu_sc0003579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392530
rosa_rugosa	Rorug03G0252000
rosa_samantha	Rh3BG338000 Rh3CG335500 Rh3DG337600
rosa_wichuraiana	Rw3G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AciI	CCGC	4 cut(s)	8, 17, 114, 225
AclWI	GGATC	2 cut(s)	130, 264
AcsI	RAATTY	2 cut(s)	479, 983
AcuI	CTGAAG	1 cut(s)	834
AfaI	GTAC	4 cut(s)	246, 535, 675, 811
AfiI	CCNNNNNNNGG	3 cut(s)	206, 423, 440
AflII	CTTAAG	1 cut(s)	890
AflIII	ACRYGT	2 cut(s)	555, 595
AgsI	TTSAA	5 cut(s)	422, 526, 643, 764, 1121
AjiI	CACGTC	1 cut(s)	558
AluBI	AGCT	6 cut(s)	25, 320, 631, 721, 818, 960
AluI	AGCT	6 cut(s)	25, 320, 631, 721, 818, 960
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	2 cut(s)	130, 264
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	4 cut(s)	52, 628, 721, 997
ApoI	RAATTY	2 cut(s)	479, 983
Asp700I	GAANNNNTTC	1 cut(s)	768
AspLEI	GCGC	1 cut(s)	889
AspS9I	GGNCC	3 cut(s)	110, 146, 353
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	189, 289
AsuII	TTCGAA	1 cut(s)	1172
AvaII	GGWCC	2 cut(s)	146, 353
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	4 cut(s)	39, 640, 708, 984
BccI	CCATC	3 cut(s)	238, 742, 1071
BceAI	ACGGC	2 cut(s)	30, 440
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	174
BfaI	CTAG	4 cut(s)	396, 512, 531, 567
BfmI	CTRYAG	1 cut(s)	773
BfrI	CTTAAG	1 cut(s)	890
BglII	AGATCT	1 cut(s)	1024
BisI	GCNGC	4 cut(s)	53, 629, 722, 998
BlsI	GCNGC	4 cut(s)	54, 630, 723, 999
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	146, 353
BmgBI	CACGTC	1 cut(s)	558
BmgT120I	GGNCC	3 cut(s)	110, 146, 353
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	6 cut(s)	93, 135, 563, 898, 929, 994
Bpu14I	TTCGAA	1 cut(s)	1172
BpuEI	CTTGAG	1 cut(s)	1034
BpuMI	CCSGG	1 cut(s)	144
Bsa29I	ATCGAT	2 cut(s)	87, 618
BsaJI	CCNNGG	1 cut(s)	498
BsaXI	ACNNNNNCTCC	2 cut(s)	802, 832
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 423, 440
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	370, 549
Bse3DI	GCAATG	1 cut(s)	735
BseCI	ATCGAT	2 cut(s)	87, 618
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	6 cut(s)	10, 545, 578, 812, 1082, 1132
BseLI	CCNNNNNNNGG	3 cut(s)	206, 423, 440
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	225, 356, 690
BseNI	ACTGG	2 cut(s)	370, 549
BseRI	GAGGAG	2 cut(s)	281, 456
BseXI	GCAGC	4 cut(s)	39, 640, 708, 984
BsgI	GTGCAG	2 cut(s)	458, 1119
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	2 cut(s)	87, 618
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	144, 207
BslFI	GGGAC	1 cut(s)	765
BslI	CCNNNNNNNGG	3 cut(s)	206, 423, 440
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	765
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	1 cut(s)	111
Bsp119I	TTCGAA	1 cut(s)	1172
Bsp1286I	GDGCHC	2 cut(s)	41, 416
Bsp143I	GATC	3 cut(s)	135, 256, 1024
BspACI	CCGC	4 cut(s)	8, 17, 114, 225
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	226, 357, 691
BspDI	ATCGAT	2 cut(s)	87, 618
BspLI	GGNNCC	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	777
BspPI	GGATC	2 cut(s)	130, 264
BspT104I	TTCGAA	1 cut(s)	1172
BspTI	CTTAAG	1 cut(s)	890
BsrDI	GCAATG	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	370, 549
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	135, 256, 1024
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	454, 1097
Bst6I	CTCTTC	4 cut(s)	175, 291, 297, 1116
BstAFI	CTTAAG	1 cut(s)	890
BstAPI	GCANNNNNTGC	1 cut(s)	917
BstBI	TTCGAA	1 cut(s)	1172
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	234, 365, 699
BstF5I	GGATG	6 cut(s)	10, 545, 578, 812, 1082, 1132
BstHHI	GCGC	1 cut(s)	889
BstKTI	GATC	3 cut(s)	138, 259, 1027
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	3 cut(s)	135, 256, 1024
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 31, 52, 737, 917, 1087
BstNSI	RCATGY	3 cut(s)	599, 709, 887
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	773
BstV1I	GCAGC	4 cut(s)	39, 640, 708, 984
BstX2I	RGATCY	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	1024
Bsu15I	ATCGAT	2 cut(s)	87, 618
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	2 cut(s)	87, 618
BtrI	CACGTC	1 cut(s)	558
BtsCI	GGATG	6 cut(s)	10, 545, 578, 812, 1082, 1132
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	556, 782, 1102
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	889
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	3 cut(s)	110, 146, 353
ClaI	ATCGAT	2 cut(s)	87, 618
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	245, 534, 674, 810
CviAII	CATG	7 cut(s)	97, 596, 706, 884, 942, 1035, 1160
CviQI	GTAC	4 cut(s)	245, 534, 674, 810
DdeI	CTNAG	3 cut(s)	234, 365, 699
DpnI	GATC	3 cut(s)	137, 258, 1026
DpnII	GATC	3 cut(s)	135, 256, 1024
DraI	TTTAAA	1 cut(s)	121
Eam1104I	CTCTTC	4 cut(s)	175, 291, 297, 1116
EarI	CTCTTC	4 cut(s)	175, 291, 297, 1116
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	146, 353
Eco57I	CTGAAG	1 cut(s)	834
EcoRI	GAATTC	1 cut(s)	983
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	7 cut(s)	100, 599, 709, 887, 945, 1038, 1163
FalI	AAGNNNNNCTT	2 cut(s)	971, 1003
FaqI	GGGAC	1 cut(s)	765
FatI	CATG	7 cut(s)	96, 595, 705, 883, 941, 1034, 1159
FauI	CCCGC	1 cut(s)	121
Fnu4HI	GCNGC	4 cut(s)	53, 629, 722, 998
FokI	GGATG	6 cut(s)	17, 532, 585, 819, 1089, 1139
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	4 cut(s)	53, 629, 722, 998
FspBI	CTAG	4 cut(s)	396, 512, 531, 567
GlaI	GCGC	1 cut(s)	888
GluI	GCNGC	4 cut(s)	53, 629, 722, 998
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	144, 207
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	889
Hin1II	CATG	7 cut(s)	100, 599, 709, 887, 945, 1038, 1163
Hin6I	GCGC	1 cut(s)	887
HinP1I	GCGC	1 cut(s)	887
HincII	GTYRAC	1 cut(s)	1018
HindII	GTYRAC	1 cut(s)	1018
HinfI	GANTC	5 cut(s)	464, 615, 643, 835, 938
HpaII	CCGG	2 cut(s)	144, 207
HphI	GGTGA	2 cut(s)	189, 289
Hpy166II	GTNNAC	2 cut(s)	674, 1018
Hpy188I	TCNGA	4 cut(s)	235, 366, 463, 700
Hpy188III	TCNNGA	3 cut(s)	130, 512, 647
Hpy8I	GTNNAC	2 cut(s)	674, 1018
Hpy99I	CGWCG	2 cut(s)	46, 110
HpyAV	CCTTC	2 cut(s)	520, 742
HpyCH4III	ACNGT	2 cut(s)	454, 1097
HpyCH4IV	ACGT	3 cut(s)	60, 536, 557
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 31, 52, 737, 917, 1087
HpyF3I	CTNAG	3 cut(s)	234, 365, 699
HpySE526I	ACGT	3 cut(s)	60, 536, 557
Hsp92II	CATG	7 cut(s)	100, 599, 709, 887, 945, 1038, 1163
HspAI	GCGC	1 cut(s)	887
Kzo9I	GATC	3 cut(s)	135, 256, 1024
LmnI	GCTCC	5 cut(s)	22, 268, 718, 823, 1144
Lsp1109I	GCAGC	4 cut(s)	39, 640, 708, 984
LweI	GCATC	6 cut(s)	93, 135, 563, 898, 929, 994
MaeI	CTAG	4 cut(s)	396, 512, 531, 567
MaeII	ACGT	3 cut(s)	60, 536, 557
MaeIII	GTNAC	2 cut(s)	398, 551
MalI	GATC	3 cut(s)	137, 258, 1026
MboI	GATC	3 cut(s)	135, 256, 1024
MboII	GAAGA	7 cut(s)	162, 305, 308, 314, 459, 1019, 1133
MfeI	CAATTG	2 cut(s)	659, 1011
MflI	RGATCY	1 cut(s)	1024
MhlI	GDGCHC	2 cut(s)	41, 416
MlyI	GAGTC	1 cut(s)	844
MroXI	GAANNNNTTC	1 cut(s)	768
MseI	TTAA	5 cut(s)	120, 858, 891, 978, 1180
MslI	CAYNNNNRTG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	890
MspI	CCGG	2 cut(s)	144, 207
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	2 cut(s)	659, 1011
Mva1269I	GAATGC	1 cut(s)	511
MwoI	GCNNNNNNNGC	6 cut(s)	14, 31, 52, 737, 917, 1087
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	135, 256, 1024
NlaIII	CATG	7 cut(s)	100, 599, 709, 887, 945, 1038, 1163
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	3 cut(s)	599, 709, 887
NspV	TTCGAA	1 cut(s)	1172
PciI	ACATGT	1 cut(s)	595
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	768
PfeI	GAWTC	4 cut(s)	464, 615, 643, 938
PkrI	GCNGC	4 cut(s)	54, 630, 723, 999
PleI	GAGTC	1 cut(s)	843
PpsI	GAGTC	1 cut(s)	843
PscI	ACATGT	1 cut(s)	595
PsiI	TTATAA	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	110, 146, 353
PstI	CTGCAG	1 cut(s)	777
PsuI	RGATCY	1 cut(s)	1024
RsaI	GTAC	4 cut(s)	246, 535, 675, 811
RsaNI	GTAC	4 cut(s)	245, 534, 674, 810
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	5 cut(s)	120, 858, 891, 978, 1180
SatI	GCNGC	4 cut(s)	53, 629, 722, 998
Sau3AI	GATC	3 cut(s)	135, 256, 1024
Sau96I	GGNCC	3 cut(s)	110, 146, 353
SchI	GAGTC	1 cut(s)	844
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	2 cut(s)	41, 416
SfaNI	GCATC	6 cut(s)	93, 135, 563, 898, 929, 994
SfcI	CTRYAG	1 cut(s)	773
SfuI	TTCGAA	1 cut(s)	1172
SinI	GGWCC	2 cut(s)	146, 353
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	890, 1049
SmoI	CTYRAG	2 cut(s)	890, 1049
SsiI	CCGC	4 cut(s)	8, 17, 114, 225
SspMI	CTAG	4 cut(s)	396, 512, 531, 567
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	454, 1097
TaiI	ACGT	3 cut(s)	63, 539, 560
TaqI	TCGA	6 cut(s)	41, 87, 429, 618, 1086, 1172
TaqII	GACCGA	1 cut(s)	341
TatI	WGTACW	2 cut(s)	673, 809
TfiI	GAWTC	4 cut(s)	464, 615, 643, 938
Tru1I	TTAA	5 cut(s)	120, 858, 891, 978, 1180
Tru9I	TTAA	5 cut(s)	120, 858, 891, 978, 1180
TscAI	CASTG	3 cut(s)	556, 782, 1102
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	4 cut(s)	52, 628, 721, 997
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	3 cut(s)	724, 844, 930
TspGWI	ACGGA	3 cut(s)	94, 198, 1035
TspRI	CASTG	3 cut(s)	556, 782, 1102
Vha464I	CTTAAG	1 cut(s)	890
VpaK11BI	GGWCC	2 cut(s)	146, 353
XapI	RAATTY	2 cut(s)	479, 983
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	3 cut(s)	599, 709, 887
XmnI	GAANNNNTTC	1 cut(s)	768
XspI	CTAG	4 cut(s)	396, 512, 531, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.