Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0009578

Physical Location & Seq

Genomic Coordinates Reverse (-)

36745078 .. 36752303

Gene Structure 7226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G026670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGATGCGGAAACGGCGGTGGAGCTTGCGAAGCAGGGCTCGACGCTTCTGCTACTGGACGTTCCTCAACACACCCTCATCGGCATCAAGATGATCCCTCCCGGTCCTCATTTCCTCTACTATTCCTCTTCCACCAGAGACGGAAAGGATTTCTCACCTATTACCGGCTTTTTCGTTTGTTCCGCACCATCTGAGGTAATTGTACGCAAGTGGGATCAACAAGAGGAGCGATTGGTGAAACTACCACAAGAAGAAGAGGAAGAGAGATATTGCCGAGCTGTTAGGAGTTGGGAGTTTGACAGATATCTCGGTCCTTATAATCTGAGACAGTATGGAGATTGGAAACGATTGTCTAGTTACATTACAAAGAGCACCATTGAACGGCTCGAACCCATTGGAGGAGAAATTACTGTTGCTTCTGAATCTTCCCTGCACAAATTCACTCCTAAAACAGCCAAGGAGAATGCTCTAGATGAGCAGTTGAAGGCTAGTACGTTCTCAACATCCAGTGACACATCGAATGCTAGAGGATGCTACTACACATCAATTCCACATGTTATCAAACATAAAGGAATCGATGTCCAGCAGCTTACTTCTTTGAATCTTGACAAGACACAATTGTTAGAAAGTGTACTACAAAAGGAATATAATGGTTCTGAGGACATGCTTCTTGGGGAGCTGCAATTTGCCTTCATTGCATTTTTGATGGGACAATCACTTGAAGCATTTCTGCAGTGGAAGTCTTTGGTCAATCTTTTATTTGGATGTACTGAAGCTCCTTTCCATACAAGGAGTCGGCTATTTGTAAAGTTCATTAAAGTCATCTACTATCAACTGAAACATGCGCTTAAGAAAGATTGCACAGATGCAAGTGGTGCATCAGCCTTGTTAGATGATTCATGGTTTTCTGCTGACAGCTTTTTGTATCATCTTTTTAAGGAATTCTTTTTACTGCTGCAAGATGCCTCAATTGTTGACGGAGATCTTCTGTCATGGACGAGGAAACTCAAGGCATTGCTAGAAAGCAATTTTGGATGGCAATTCGAGCAGAACAGTGCAGTTGATGGGATACATTTTGAAGAGGATGATGAGTTTGCTCCTGTTGTTGTGATGTTGGATGACCCAAGTTCGACTGAAGTACCAAGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAR2

Protein Analysis

383

Amino Acids

43.66

Weight (kDa)

5.07

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAR2_1st	PF20981	25 - 131	2e-32	AAR2 N-terminal domain
AAR2	PF05282	180 - 349	3.7e-44	AAR2 C-terminal repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66510 AT1G66510 AT1G66510 AT1G66510
fragaria_vesca	FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040
malus_domestica	MD09G1261000.v1.1
prunus_persica	Prupe.3G158200_v2.0.a1 Prupe.3G158200_v2.0.a1
pyrus_communis	pycom09g17530
rosa_chinensis	RchiOBHm_Chr3g0492101
rosa_laevigata	RLG00000022793
rosa_multiflora	Rmu_sc0003579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392530
rosa_rugosa	Rorug03G0252000
rosa_samantha	Rh3BG338000 Rh3CG335500 Rh3DG337600
rosa_wichuraiana	Rw3G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AciI	CCGC	3 cut(s)	8, 17, 183
AclWI	GGATC	2 cut(s)	88, 222
AcsI	RAATTY	2 cut(s)	437, 941
AcuI	CTGAAG	1 cut(s)	792
AfaI	GTAC	5 cut(s)	204, 493, 633, 769, 1140
AfiI	CCNNNNNNNGG	3 cut(s)	164, 381, 398
AflII	CTTAAG	1 cut(s)	848
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	5 cut(s)	380, 484, 601, 722, 1079
AjuI	GAANNNNNNNTTGG	2 cut(s)	1014, 1046
AluBI	AGCT	6 cut(s)	25, 278, 589, 679, 776, 918
AluI	AGCT	6 cut(s)	25, 278, 589, 679, 776, 918
Alw21I	GWGCWC	1 cut(s)	374
Alw26I	GTCTC	2 cut(s)	132, 319
AlwI	GGATC	2 cut(s)	88, 222
ApeKI	GCWGC	3 cut(s)	586, 679, 955
ApoI	RAATTY	2 cut(s)	437, 941
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	2 cut(s)	104, 311
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	147, 247
AvaII	GGWCC	2 cut(s)	104, 311
BaeI	ACNNNNGTAYC	1 cut(s)	1122
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	374
BbvI	GCAGC	3 cut(s)	598, 666, 942
BccI	CCATC	4 cut(s)	196, 700, 1029, 1058
BceAI	ACGGC	2 cut(s)	30, 398
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciVI	GTATCC	1 cut(s)	1062
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	132, 319
BfaI	CTAG	5 cut(s)	354, 470, 489, 525, 1019
BfmI	CTRYAG	1 cut(s)	731
BfrI	CTTAAG	1 cut(s)	848
BfuI	GTATCC	1 cut(s)	1062
BglII	AGATCT	1 cut(s)	982
BisI	GCNGC	3 cut(s)	587, 680, 956
BlsI	GCNGC	3 cut(s)	588, 681, 957
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	2 cut(s)	104, 311
BmgT120I	GGNCC	2 cut(s)	104, 311
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	5 cut(s)	93, 521, 856, 887, 952
BpuEI	CTTGAG	1 cut(s)	992
BpuMI	CCSGG	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	760, 790
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 381, 398
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	60, 507
Bse3DI	GCAATG	2 cut(s)	693, 1013
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	7 cut(s)	10, 503, 536, 770, 1040, 1090, 1123
BseLI	CCNNNNNNNGG	3 cut(s)	164, 381, 398
BseMI	GCAATG	2 cut(s)	693, 1013
BseMII	CTCAG	3 cut(s)	183, 314, 648
BseNI	ACTGG	2 cut(s)	60, 507
BseRI	GAGGAG	2 cut(s)	239, 414
BseXI	GCAGC	3 cut(s)	598, 666, 942
BsgI	GTGCAG	2 cut(s)	416, 1077
BshVI	ATCGAT	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	102, 165
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	3 cut(s)	164, 381, 398
BsmAI	GTCTC	2 cut(s)	132, 319
BsmBI	CGTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	723
BsmI	GAATGC	2 cut(s)	469, 526
Bsp1286I	GDGCHC	2 cut(s)	41, 374
Bsp143I	GATC	3 cut(s)	93, 214, 982
BspACI	CCGC	3 cut(s)	8, 17, 183
BspCNI	CTCAG	3 cut(s)	184, 315, 649
BspDI	ATCGAT	1 cut(s)	576
BspMAI	CTGCAG	1 cut(s)	735
BspPI	GGATC	2 cut(s)	88, 222
BspTI	CTTAAG	1 cut(s)	848
BsrDI	GCAATG	2 cut(s)	693, 1013
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	60, 507
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	3 cut(s)	93, 214, 982
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	3 cut(s)	330, 412, 1055
Bst6I	CTCTTC	4 cut(s)	133, 249, 255, 1074
BstAFI	CTTAAG	1 cut(s)	848
BstAPI	GCANNNNNTGC	1 cut(s)	875
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	192, 323, 657
BstF5I	GGATG	7 cut(s)	10, 503, 536, 770, 1040, 1090, 1123
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	3 cut(s)	96, 217, 985
BstMAI	GTCTC	2 cut(s)	132, 319
BstMBI	GATC	3 cut(s)	93, 214, 982
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 31, 695, 875, 1045
BstNSI	RCATGY	3 cut(s)	557, 667, 845
BstSCI	CCNGG	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	731
BstV1I	GCAGC	3 cut(s)	598, 666, 942
BstX2I	RGATCY	1 cut(s)	982
BstYI	RGATCY	1 cut(s)	982
Bsu15I	ATCGAT	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	1062
BsuTUI	ATCGAT	1 cut(s)	576
BtsCI	GGATG	7 cut(s)	10, 503, 536, 770, 1040, 1090, 1123
BtsI	GCAGTG	1 cut(s)	740
BtsIMutI	CAGTG	3 cut(s)	514, 740, 1060
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	104, 311
ClaI	ATCGAT	1 cut(s)	576
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	5 cut(s)	203, 492, 632, 768, 1139
CviAII	CATG	5 cut(s)	554, 664, 842, 900, 993
CviQI	GTAC	5 cut(s)	203, 492, 632, 768, 1139
DdeI	CTNAG	3 cut(s)	192, 323, 657
DpnI	GATC	3 cut(s)	95, 216, 984
DpnII	GATC	3 cut(s)	93, 214, 982
Eam1104I	CTCTTC	4 cut(s)	133, 249, 255, 1074
EarI	CTCTTC	4 cut(s)	133, 249, 255, 1074
Eco130I	CCWWGG	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	305
Eco47I	GGWCC	2 cut(s)	104, 311
Eco57I	CTGAAG	1 cut(s)	792
EcoRI	GAATTC	1 cut(s)	941
EcoRV	GATATC	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	456
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	5 cut(s)	557, 667, 845, 903, 996
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	5 cut(s)	553, 663, 841, 899, 992
Fnu4HI	GCNGC	3 cut(s)	587, 680, 956
FokI	GGATG	7 cut(s)	17, 490, 543, 777, 1047, 1097, 1130
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	587, 680, 956
FspBI	CTAG	5 cut(s)	354, 470, 489, 525, 1019
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	3 cut(s)	587, 680, 956
HapII	CCGG	2 cut(s)	102, 165
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	5 cut(s)	557, 667, 845, 903, 996
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HinfI	GANTC	6 cut(s)	422, 573, 601, 793, 896, 1146
HpaII	CCGG	2 cut(s)	102, 165
HphI	GGTGA	2 cut(s)	147, 247
Hpy166II	GTNNAC	2 cut(s)	632, 976
Hpy188I	TCNGA	4 cut(s)	193, 324, 421, 658
Hpy188III	TCNNGA	3 cut(s)	88, 470, 605
Hpy8I	GTNNAC	2 cut(s)	632, 976
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	478, 700
HpyCH4III	ACNGT	3 cut(s)	330, 412, 1055
HpyCH4IV	ACGT	2 cut(s)	60, 494
HpyCH4V	TGCA	9 cut(s)	433, 682, 698, 733, 861, 869, 878, 958, 1058
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 31, 695, 875, 1045
HpyF3I	CTNAG	3 cut(s)	192, 323, 657
HpySE526I	ACGT	2 cut(s)	60, 494
Hsp92II	CATG	5 cut(s)	557, 667, 845, 903, 996
HspAI	GCGC	1 cut(s)	845
Kzo9I	GATC	3 cut(s)	93, 214, 982
LmnI	GCTCC	5 cut(s)	22, 226, 676, 781, 1102
LpnPI	CCDG	9 cut(s)	20, 41, 115, 148, 178, 443, 520, 596, 1113
Lsp1109I	GCAGC	3 cut(s)	598, 666, 942
LweI	GCATC	5 cut(s)	93, 521, 856, 887, 952
MaeI	CTAG	5 cut(s)	354, 470, 489, 525, 1019
MaeII	ACGT	2 cut(s)	60, 494
MaeIII	GTNAC	2 cut(s)	356, 509
MalI	GATC	3 cut(s)	95, 216, 984
MboI	GATC	3 cut(s)	93, 214, 982
MboII	GAAGA	7 cut(s)	120, 263, 266, 272, 417, 977, 1091
MfeI	CAATTG	2 cut(s)	617, 969
MflI	RGATCY	1 cut(s)	982
MhlI	GDGCHC	2 cut(s)	41, 374
MlyI	GAGTC	1 cut(s)	802
MmeI	TCCRAC	1 cut(s)	1095
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	3 cut(s)	816, 849, 936
MslI	CAYNNNNRTG	1 cut(s)	89
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	2 cut(s)	102, 165
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	2 cut(s)	617, 969
Mva1269I	GAATGC	2 cut(s)	469, 526
MwoI	GCNNNNNNNGC	5 cut(s)	14, 31, 695, 875, 1045
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	93, 214, 982
NlaIII	CATG	5 cut(s)	557, 667, 845, 903, 996
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	509
NspI	RCATGY	3 cut(s)	557, 667, 845
PciI	ACATGT	1 cut(s)	553
PctI	GAATGC	2 cut(s)	469, 526
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	5 cut(s)	422, 573, 601, 896, 1146
PkrI	GCNGC	3 cut(s)	588, 681, 957
PleI	GAGTC	1 cut(s)	801
PpsI	GAGTC	1 cut(s)	801
PscI	ACATGT	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	104, 311
PstI	CTGCAG	1 cut(s)	735
PsuI	RGATCY	1 cut(s)	982
RsaI	GTAC	5 cut(s)	204, 493, 633, 769, 1140
RsaNI	GTAC	5 cut(s)	203, 492, 632, 768, 1139
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	3 cut(s)	816, 849, 936
SatI	GCNGC	3 cut(s)	587, 680, 956
Sau3AI	GATC	3 cut(s)	93, 214, 982
Sau96I	GGNCC	2 cut(s)	104, 311
SchI	GAGTC	1 cut(s)	802
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	2 cut(s)	41, 374
SfaNI	GCATC	5 cut(s)	93, 521, 856, 887, 952
SfcI	CTRYAG	1 cut(s)	731
SinI	GGWCC	2 cut(s)	104, 311
SmiMI	CAYNNNNRTG	1 cut(s)	89
SmlI	CTYRAG	2 cut(s)	848, 1007
SmoI	CTYRAG	2 cut(s)	848, 1007
SsiI	CCGC	3 cut(s)	8, 17, 183
SspMI	CTAG	5 cut(s)	354, 470, 489, 525, 1019
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	3 cut(s)	330, 412, 1055
TaiI	ACGT	2 cut(s)	63, 497
TaqI	TCGA	6 cut(s)	41, 387, 518, 576, 1044, 1130
TaqII	GACCGA	1 cut(s)	299
TatI	WGTACW	2 cut(s)	631, 767
TfiI	GAWTC	5 cut(s)	422, 573, 601, 896, 1146
Tru1I	TTAA	3 cut(s)	816, 849, 936
Tru9I	TTAA	3 cut(s)	816, 849, 936
TscAI	CASTG	3 cut(s)	514, 740, 1060
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	3 cut(s)	586, 679, 955
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	3 cut(s)	682, 802, 888
TspGWI	ACGGA	2 cut(s)	156, 993
TspRI	CASTG	3 cut(s)	514, 740, 1060
Vha464I	CTTAAG	1 cut(s)	848
VpaK11BI	GGWCC	2 cut(s)	104, 311
XapI	RAATTY	2 cut(s)	437, 941
XbaI	TCTAGA	1 cut(s)	469
XceI	RCATGY	3 cut(s)	557, 667, 845
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	5 cut(s)	354, 470, 489, 525, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.