Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0009578

Physical Location & Seq

Genomic Coordinates Forward (+)

23789278 .. 23797411

Gene Structure 8134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGACGCGGAAACGGCGGTGGAGGCGGCGAAGCAGGGCTCGACGCTTGTGCTACTGGACGTGCCTCAGTACACCCTCATCGGCATCGATACTCAGATGGTCTCTGTAGGCCCCGCCTTCAAAGGCATCAAGATGATCCCTCCCGGTCCTCATTTCGTCTCCTATTCCTCATCCACCAGAGACGGCAAGGATTTCTCACCCGTTACCGGCTTCTTCATTTTTTCCGGGCCATCTGAGGTAATCGTACGCAAGTGGGATGCACAAGAGGAGCGGCTTGTCAAGTTACCACAAGATGAGGAAGAGAGATATTGCTGTGCAGTTAGAAATTGGGAGTTTGACAGATTTCTTGGTCCTTATAATCTAAGCCAGTATGGAGATTGGAAACGATTATCTAGCTACATTACAAAGACCATCATTGAACGGATAGAACCCATTGGAGGAGAAATTACTGTTGCCTCAGAATCTGCCCTGCATAAATCCACTCCTAAAACAGCCAAGGAGAATGCTCTAGATGAGCAGTTAAAGGCTAGCAGGTTCTCAACAGCCAGTGATACGTCTAATGCTAGAGGATGCTACTACACATCAATTCCACATGTGATCAAACACAAAGGAATCGATGTCCAGCAGCTTACTTCTTTGAATCTTGACAAGACACATTTGTTAGAAAGTGTACTACAAAAAGATTATGGAGGTTCTGAGGATATGCTTCTTGGGGAGCTGCAATATGCCTTTGTTGCATTTTTGATGGGGCAATCACTTGAAGCCTTTCTACAGTGGAAAGCACTGGTCAATCTTTTATTTGGATGTACTGAAGCTCCTTTCCATACAAGGAGTCGGCTATTTGTAAAGTTCATTAAAGTCATCTACTATCAACTAAAACATGCGCTTAAGAAGGACTGCACGGAGACAAGCGGTGCATCAGCCTTGTTAGATGATTCATGGTTTTCTGCTGATAGCTTTTTATATCATCTTTTTAAGGAATTCTTTTTACTTCTGCAAGATGCCTCAGTTGTTGATGGAGATCTTCTTTCATGGACAAGAAAACTCAAGGCCTTGCTTGAAAGCAATTTTGGATGGGAATTCGTGCAGAACAGTGCAGTTGATGGGATACACTTTGAAGAGGATGATGAGTTTGCTCCTGTTGTTGTGATGTTGGATGACCCAAATTCGACTGAAGTACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAR2

Protein Analysis

395

Amino Acids

44.33

Weight (kDa)

5.0

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAR2_1st	PF20981	12 - 144	1.8e-44	AAR2 N-terminal domain
AAR2	PF05282	193 - 361	6.3e-44	AAR2 C-terminal repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66510 AT1G66510 AT1G66510 AT1G66510
fragaria_vesca	FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040
malus_domestica	MD09G1261000.v1.1
prunus_persica	Prupe.3G158200_v2.0.a1 Prupe.3G158200_v2.0.a1
pyrus_communis	pycom09g17530
rosa_chinensis	RchiOBHm_Chr3g0492101
rosa_laevigata	RLG00000022793
rosa_multiflora	Rmu_sc0003579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392530
rosa_rugosa	Rorug03G0252000
rosa_samantha	Rh3BG338000 Rh3CG335500 Rh3DG337600
rosa_wichuraiana	Rw3G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
Acc36I	ACCTGC	1 cut(s)	522
AccBSI	CCGCTC	1 cut(s)	271
AccII	CGCG	1 cut(s)	8
AciI	CCGC	6 cut(s)	8, 17, 26, 114, 271, 912
AclWI	GGATC	1 cut(s)	130
AcsI	RAATTY	3 cut(s)	980, 1079, 1165
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	5 cut(s)	71, 246, 672, 808, 1179
AfiI	CCNNNNNNNGG	2 cut(s)	206, 437
AflII	CTTAAG	1 cut(s)	887
AflIII	ACRYGT	1 cut(s)	592
AgsI	TTSAA	6 cut(s)	121, 419, 640, 761, 1061, 1118
AjiI	CACGTC	1 cut(s)	61
AjuI	GAANNNNNNNTTGG	2 cut(s)	1053, 1085
AluBI	AGCT	5 cut(s)	396, 628, 718, 815, 957
AluI	AGCT	5 cut(s)	396, 628, 718, 815, 957
Alw26I	GTCTC	4 cut(s)	106, 163, 174, 899
AlwI	GGATC	1 cut(s)	130
AlwNI	CAGNNNCTG	1 cut(s)	464
AoxI	GGCC	3 cut(s)	109, 227, 1050
ApeKI	GCWGC	2 cut(s)	625, 718
ApoI	RAATTY	3 cut(s)	980, 1079, 1165
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	886
AspS9I	GGNCC	4 cut(s)	110, 146, 227, 350
AsuC2I	CCSGG	2 cut(s)	144, 226
AsuHPI	GGTGA	1 cut(s)	189
AsuNHI	GCTAGC	1 cut(s)	527
AvaII	GGWCC	2 cut(s)	146, 350
BaeI	ACNNNNGTAYC	1 cut(s)	1161
BanII	GRGCYC	1 cut(s)	41
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
BbvI	GCAGC	2 cut(s)	637, 705
BccI	CCATC	7 cut(s)	91, 238, 419, 739, 1010, 1068, 1097
BceAI	ACGGC	2 cut(s)	30, 199
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciVI	GTATCC	1 cut(s)	1101
BclI	TGATCA	1 cut(s)	597
BcnI	CCSGG	2 cut(s)	144, 226
BcoDI	GTCTC	4 cut(s)	106, 163, 174, 899
BfaI	CTAG	4 cut(s)	393, 509, 528, 564
BfmI	CTRYAG	2 cut(s)	105, 770
BfrI	CTTAAG	1 cut(s)	887
BfuAI	ACCTGC	1 cut(s)	522
BfuI	GTATCC	1 cut(s)	1101
BglII	AGATCT	1 cut(s)	1021
BisI	GCNGC	4 cut(s)	27, 272, 626, 719
BlsI	GCNGC	4 cut(s)	28, 273, 627, 720
Bme1390I	CCNGG	2 cut(s)	144, 226
Bme18I	GGWCC	2 cut(s)	146, 350
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	4 cut(s)	110, 146, 227, 350
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	2 cut(s)	144, 226
BmsI	GCATC	6 cut(s)	93, 135, 247, 560, 926, 991
BmtI	GCTAGC	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	2 cut(s)	144, 226
Bsa29I	ATCGAT	2 cut(s)	87, 615
BsaBI	GATNNNNATC	1 cut(s)	1020
BsaI	GGTCTC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 437
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	4 cut(s)	60, 367, 546, 789
Bse8I	GATNNNNATC	1 cut(s)	1020
BseCI	ATCGAT	2 cut(s)	87, 615
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	7 cut(s)	170, 262, 575, 809, 1079, 1129, 1162
BseJI	GATNNNNATC	1 cut(s)	1020
BseLI	CCNNNNNNNGG	2 cut(s)	206, 437
BseMII	CTCAG	6 cut(s)	80, 107, 225, 471, 687, 1020
BseNI	ACTGG	4 cut(s)	60, 367, 546, 789
BseRI	GAGGAG	2 cut(s)	281, 453
BseXI	GCAGC	2 cut(s)	637, 705
BsgI	GTGCAG	4 cut(s)	336, 883, 1106, 1116
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	111, 229, 1052
BshVI	ATCGAT	2 cut(s)	87, 615
BsiSI	CCGG	3 cut(s)	144, 207, 225
BsiWI	CGTACG	1 cut(s)	244
BslI	CCNNNNNNNGG	2 cut(s)	206, 437
BsmAI	GTCTC	4 cut(s)	106, 163, 174, 899
BsmBI	CGTCTC	2 cut(s)	163, 174
BsmI	GAATGC	1 cut(s)	508
BsnI	GGCC	3 cut(s)	111, 229, 1052
Bso31I	GGTCTC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	135, 597, 1021
BspACI	CCGC	6 cut(s)	8, 17, 26, 114, 271, 912
BspANI	GGCC	3 cut(s)	111, 229, 1052
BspCNI	CTCAG	6 cut(s)	79, 106, 226, 470, 688, 1019
BspDI	ATCGAT	2 cut(s)	87, 615
BspFNI	CGCG	1 cut(s)	8
BspLI	GGNNCC	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	522
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	130
BspTI	CTTAAG	1 cut(s)	887
BspTNI	GGTCTC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	4 cut(s)	60, 367, 546, 789
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	3 cut(s)	135, 597, 1021
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	3 cut(s)	451, 774, 1094
Bst6I	CTCTTC	2 cut(s)	294, 1113
BstAFI	CTTAAG	1 cut(s)	887
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	7 cut(s)	66, 93, 234, 362, 457, 696, 1006
BstF5I	GGATG	7 cut(s)	170, 262, 575, 809, 1079, 1129, 1162
BstFNI	CGCG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	886
BstKTI	GATC	3 cut(s)	138, 600, 1024
BstMAI	GTCTC	4 cut(s)	106, 163, 174, 899
BstMBI	GATC	3 cut(s)	135, 597, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 23, 734
BstNSI	RCATGY	2 cut(s)	596, 884
BstSCI	CCNGG	2 cut(s)	142, 224
BstSFI	CTRYAG	2 cut(s)	105, 770
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	637, 705
BstX2I	RGATCY	1 cut(s)	1021
BstYI	RGATCY	1 cut(s)	1021
Bsu15I	ATCGAT	2 cut(s)	87, 615
BsuI	GTATCC	1 cut(s)	1101
BsuRI	GGCC	3 cut(s)	111, 229, 1052
BsuTUI	ATCGAT	2 cut(s)	87, 615
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	7 cut(s)	170, 262, 575, 809, 1079, 1129, 1162
BtsIMutI	CAGTG	4 cut(s)	553, 779, 782, 1099
BveI	ACCTGC	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	529
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	1 cut(s)	886
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	4 cut(s)	110, 146, 227, 350
ClaI	ATCGAT	2 cut(s)	87, 615
CseI	GACGC	2 cut(s)	14, 52
Csp6I	GTAC	5 cut(s)	70, 245, 671, 807, 1178
CviAII	CATG	5 cut(s)	593, 881, 939, 1032, 1182
CviQI	GTAC	5 cut(s)	70, 245, 671, 807, 1178
DdeI	CTNAG	7 cut(s)	66, 93, 234, 362, 457, 696, 1006
DpnI	GATC	3 cut(s)	137, 599, 1023
DpnII	GATC	3 cut(s)	135, 597, 1021
Eam1104I	CTCTTC	2 cut(s)	294, 1113
EarI	CTCTTC	2 cut(s)	294, 1113
Eco130I	CCWWGG	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	1052
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	106
Eco47I	GGWCC	2 cut(s)	146, 350
Eco57I	CTGAAG	1 cut(s)	831
EcoO109I	RGGNCCY	1 cut(s)	110
EcoRI	GAATTC	2 cut(s)	980, 1079
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	2 cut(s)	163, 174
FaeI	CATG	5 cut(s)	596, 884, 942, 1035, 1185
FalI	AAGNNNNNCTT	2 cut(s)	968, 1000
FatI	CATG	5 cut(s)	592, 880, 938, 1031, 1181
FauI	CCCGC	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	27, 272, 626, 719
FokI	GGATG	7 cut(s)	157, 269, 582, 816, 1086, 1136, 1169
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	4 cut(s)	27, 272, 626, 719
FspBI	CTAG	4 cut(s)	393, 509, 528, 564
GlaI	GCGC	1 cut(s)	885
GluI	GCNGC	4 cut(s)	27, 272, 626, 719
HaeIII	GGCC	3 cut(s)	111, 229, 1052
HapII	CCGG	3 cut(s)	144, 207, 225
HgaI	GACGC	2 cut(s)	14, 52
HhaI	GCGC	1 cut(s)	886
Hin1II	CATG	5 cut(s)	596, 884, 942, 1035, 1185
Hin6I	GCGC	1 cut(s)	884
HinP1I	GCGC	1 cut(s)	884
HinfI	GANTC	5 cut(s)	461, 612, 640, 832, 935
HpaII	CCGG	3 cut(s)	144, 207, 225
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	2 cut(s)	72, 671
Hpy188I	TCNGA	4 cut(s)	96, 235, 460, 697
Hpy188III	TCNNGA	3 cut(s)	130, 509, 644
Hpy8I	GTNNAC	2 cut(s)	72, 671
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	2 cut(s)	127, 886
HpyCH4III	ACNGT	3 cut(s)	451, 774, 1094
HpyCH4IV	ACGT	2 cut(s)	60, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 23, 734
HpyF3I	CTNAG	7 cut(s)	66, 93, 234, 362, 457, 696, 1006
HpySE526I	ACGT	2 cut(s)	60, 554
Hsp92II	CATG	5 cut(s)	596, 884, 942, 1035, 1185
HspAI	GCGC	1 cut(s)	884
Ksp22I	TGATCA	1 cut(s)	597
Kzo9I	GATC	3 cut(s)	135, 597, 1021
LmnI	GCTCC	4 cut(s)	268, 715, 820, 1141
Lsp1109I	GCAGC	2 cut(s)	637, 705
LweI	GCATC	6 cut(s)	93, 135, 247, 560, 926, 991
MaeI	CTAG	4 cut(s)	393, 509, 528, 564
MaeII	ACGT	2 cut(s)	60, 554
MaeIII	GTNAC	2 cut(s)	202, 282
MalI	GATC	3 cut(s)	137, 599, 1023
MbiI	CCGCTC	1 cut(s)	271
MboI	GATC	3 cut(s)	135, 597, 1021
MboII	GAAGA	4 cut(s)	205, 311, 1016, 1130
MflI	RGATCY	1 cut(s)	1021
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	7 cut(s)	325, 444, 585, 980, 1066, 1079, 1165
MlyI	GAGTC	1 cut(s)	841
MmeI	TCCRAC	1 cut(s)	1134
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	4 cut(s)	521, 855, 888, 975
MslI	CAYNNNNRTG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	3 cut(s)	144, 207, 225
MspR9I	CCNGG	2 cut(s)	144, 226
Mva1269I	GAATGC	1 cut(s)	508
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	3 cut(s)	14, 23, 734
NciI	CCSGG	2 cut(s)	144, 226
NdeII	GATC	3 cut(s)	135, 597, 1021
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	5 cut(s)	596, 884, 942, 1035, 1185
NlaIV	GGNNCC	1 cut(s)	112
NspI	RCATGY	2 cut(s)	596, 884
PceI	AGGCCT	1 cut(s)	1052
PciI	ACATGT	1 cut(s)	592
PctI	GAATGC	1 cut(s)	508
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	4 cut(s)	461, 612, 640, 935
Pfl23II	CGTACG	1 cut(s)	244
PkrI	GCNGC	4 cut(s)	28, 273, 627, 720
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
PscI	ACATGT	1 cut(s)	592
PsiI	TTATAA	1 cut(s)	357
PspLI	CGTACG	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	4 cut(s)	110, 146, 227, 350
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	1021
RsaI	GTAC	5 cut(s)	71, 246, 672, 808, 1179
RsaNI	GTAC	5 cut(s)	70, 245, 671, 807, 1178
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	4 cut(s)	521, 855, 888, 975
SatI	GCNGC	4 cut(s)	27, 272, 626, 719
Sau3AI	GATC	3 cut(s)	135, 597, 1021
Sau96I	GGNCC	4 cut(s)	110, 146, 227, 350
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	2 cut(s)	144, 226
SduI	GDGCHC	1 cut(s)	41
SfaNI	GCATC	6 cut(s)	93, 135, 247, 560, 926, 991
SfcI	CTRYAG	2 cut(s)	105, 770
SinI	GGWCC	2 cut(s)	146, 350
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	887, 1046
SmoI	CTYRAG	2 cut(s)	887, 1046
Sse9I	AATT	7 cut(s)	325, 444, 585, 980, 1066, 1079, 1165
SseBI	AGGCCT	1 cut(s)	1052
SsiI	CCGC	6 cut(s)	8, 17, 26, 114, 271, 912
SspMI	CTAG	4 cut(s)	393, 509, 528, 564
StuI	AGGCCT	1 cut(s)	1052
StyD4I	CCNGG	2 cut(s)	142, 224
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	3 cut(s)	451, 774, 1094
TaiI	ACGT	2 cut(s)	63, 557
TaqI	TCGA	4 cut(s)	41, 87, 615, 1169
TasI	AATT	7 cut(s)	325, 444, 585, 980, 1066, 1079, 1165
TatI	WGTACW	3 cut(s)	69, 670, 806
TauI	GCSGC	2 cut(s)	29, 274
TfiI	GAWTC	4 cut(s)	461, 612, 640, 935
Tru1I	TTAA	4 cut(s)	521, 855, 888, 975
Tru9I	TTAA	4 cut(s)	521, 855, 888, 975
TscAI	CASTG	4 cut(s)	553, 779, 789, 1099
TseI	GCWGC	2 cut(s)	625, 718
TspDTI	ATGAA	4 cut(s)	205, 841, 927, 1020
TspGWI	ACGGA	2 cut(s)	436, 917
TspRI	CASTG	4 cut(s)	553, 779, 789, 1099
Vha464I	CTTAAG	1 cut(s)	887
VpaK11BI	GGWCC	2 cut(s)	146, 350
XapI	RAATTY	3 cut(s)	980, 1079, 1165
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	2 cut(s)	596, 884
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	4 cut(s)	393, 509, 528, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.