Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009578

Physical Location & Seq

Genomic Coordinates Reverse (-)

18032248 .. 18039551

Gene Structure 7304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g17530.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGATTCCGAAACGGCGCTGGAGCTTGTGAAGCGAGGCGTGACGCTTCTCTTCCTCGACGTGCCTCAGCACACCCTCATCGGCATTGACACTCAGATGTTTTCTGTGGGCCCGGAATTCAAAGGCATAAAGATGATTCCTCCTGGTCCTCATTTTGTGTACTATAGCTCATCCACGAGAGATGGCAAGGAGTTTGCGCCAATTATCGGGTTTTTTCTTGATGCCGGGCCATCGGAGGTAATTGTTCGTAAGTGGGATCAACAAGACGAACGATTAGTCAAAGTACCAGAAGAAGAGGAAGAGAGATACTGCCAAGCAGTTAGAAGTTTGGAGTTTGACAGACATCTTGGTCCTTATAATCTAAGCCAGTATGGAGATTGGAAACAATTATCTAGCTACGTTACAAAGAGCATCATCCAACGGATTGAACCCATTGGAGGAGAAATTACTATTGCATCTGAATCTGCAATGCGTATAAACACTCCTAACACAACGATGGAGAAAGCTCTAGATGAGCAGTTGAATGCTAGCAAGTTCTCAACACCCAGTGACAAGTCTCAGATGAGAGGATGTTACTACACATCAATTCCTCGTGTTATCAAACGAAAAGGAATCCAGGGCCAACAACTTACTTCTTTGAATCTTGACAAGACACAATTGTTAGAAAGTGTACTGCTAGAAGATTATGGTGGTTCTGAGGACCTGCTTCTTGCAGAGCTGCAATTTGCCTTTATTGCATTTTTGATGGGCCAATCACTTGAAGCATTTCTACAATGGAAGTCCTTGGTCAGTCTTTTATTTGGATGCACTGAAGCTCCTTTCCGTACAAGAAGTCTGCTATTTGCAAAGTTTATTAAAGTCATCTACTATCAATTGAAACATGGACTTCAGAAAGGTTGCACAGACACAAGCATTGCATCATCATTGTTAGATGAATCCTGGTTTTCTGCTGATAGCTTTTTGCACCGTCTTTTAAAGGAATTTTTTTTGTTGGTGCAAGATGCCTCAGTTGTTGACGGAGATCTTCTGTCATGGACAAGGAAGCTCAAGGAGTTGCTTGAAAATAATCTTGGATGGGAATTCCAGCATGACAGTGCAGTTGATGGGATGCACTTTGAAGAAGATGATGAGTATGCTCCTGTTGTTGAAATGCTGGATGACCCAAGTTCTAGTGAAGCACCAGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAR2

Protein Analysis

397

Amino Acids

44.88

Weight (kDa)

4.79

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66510 AT1G66510 AT1G66510 AT1G66510
fragaria_vesca	FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040
malus_domestica	MD09G1261000.v1.1
prunus_persica	Prupe.3G158200_v2.0.a1 Prupe.3G158200_v2.0.a1
pyrus_communis	pycom09g17530
rosa_chinensis	RchiOBHm_Chr3g0492101
rosa_laevigata	RLG00000022793
rosa_multiflora	Rmu_sc0003579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392530
rosa_rugosa	Rorug03G0252000
rosa_samantha	Rh3BG338000 Rh3CG335500 Rh3DG337600
rosa_wichuraiana	Rw3G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	357
AasI	GACNNNNNNGTC	1 cut(s)	348
Acc36I	ACCTGC	1 cut(s)	711
AclWI	GGATC	1 cut(s)	264
AcsI	RAATTY	3 cut(s)	116, 980, 1079
AcuI	CTGAAG	2 cut(s)	831, 872
AdeI	CACNNNGTG	1 cut(s)	548
AfaI	GTAC	4 cut(s)	161, 285, 672, 826
AfiI	CCNNNNNNNGG	2 cut(s)	206, 437
AgsI	TTSAA	9 cut(s)	121, 428, 523, 640, 761, 877, 1061, 1118, 1148
AjiI	CACGTC	1 cut(s)	61
AjnI	CCWGG	3 cut(s)	142, 615, 938
AjuI	GAANNNNNNNTTGG	2 cut(s)	1053, 1085
AluBI	AGCT	8 cut(s)	25, 168, 396, 506, 718, 815, 957, 1045
AluI	AGCT	8 cut(s)	25, 168, 396, 506, 718, 815, 957, 1045
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	1 cut(s)	264
AoxI	GGCC	4 cut(s)	109, 227, 619, 748
ApaI	GGGCCC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	3 cut(s)	116, 980, 1079
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
Asp700I	GAANNNNTTC	1 cut(s)	765
AspLEI	GCGC	2 cut(s)	19, 199
AspS9I	GGNCC	8 cut(s)	109, 110, 146, 227, 350, 619, 700, 748
AsuC2I	CCSGG	2 cut(s)	113, 226
AsuNHI	GCTAGC	1 cut(s)	527
AvaII	GGWCC	3 cut(s)	146, 350, 700
BaeGI	GKGCMC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	113
BarI	GAAGNNNNNNTAC	2 cut(s)	753, 785
BauI	CACGAG	2 cut(s)	175, 591
BbvCI	CCTCAGC	1 cut(s)	66
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	6 cut(s)	176, 238, 490, 739, 1068, 1097
BceAI	ACGGC	1 cut(s)	30
BciT130I	CCWGG	3 cut(s)	144, 617, 940
BcnI	CCSGG	2 cut(s)	113, 226
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	5 cut(s)	393, 509, 528, 677, 1170
BfmI	CTRYAG	1 cut(s)	163
BfoI	RGCGCY	1 cut(s)	20
BfuAI	ACCTGC	1 cut(s)	711
BglII	AGATCT	1 cut(s)	1021
BisI	GCNGC	1 cut(s)	719
BlsI	GCNGC	1 cut(s)	720
Bme1390I	CCNGG	5 cut(s)	113, 144, 226, 617, 940
Bme18I	GGWCC	3 cut(s)	146, 350, 700
BmgBI	CACGTC	1 cut(s)	61
BmgT120I	GGNCC	8 cut(s)	109, 110, 146, 227, 350, 619, 700, 748
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	5 cut(s)	113, 144, 226, 617, 940
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	7 cut(s)	211, 420, 464, 794, 926, 991, 1098
BmtI	GCTAGC	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	41
Bpu10I	CCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	1 cut(s)	1031
BpuMI	CCSGG	2 cut(s)	113, 226
BsaJI	CCNNGG	2 cut(s)	616, 783
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 437
Bse1I	ACTGG	3 cut(s)	367, 546, 1181
Bse3DI	GCAATG	2 cut(s)	474, 912
BseBI	CCWGG	3 cut(s)	144, 617, 940
BseDI	CCNNGG	2 cut(s)	616, 783
BseGI	GGATG	7 cut(s)	170, 414, 575, 809, 1079, 1113, 1162
BseLI	CCNNNNNNNGG	2 cut(s)	206, 437
BseMI	GCAATG	2 cut(s)	474, 912
BseMII	CTCAG	5 cut(s)	80, 107, 572, 687, 1020
BseNI	ACTGG	3 cut(s)	367, 546, 1181
BseRI	GAGGAG	1 cut(s)	453
BseSI	GKGCMC	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	705
BsgI	GTGCAG	1 cut(s)	1116
BshFI	GGCC	4 cut(s)	111, 229, 621, 750
BsiSI	CCGG	2 cut(s)	113, 225
BslI	CCNNNNNNNGG	2 cut(s)	206, 437
BsmAI	GTCTC	1 cut(s)	561
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	4 cut(s)	111, 229, 621, 750
Bsp120I	GGGCCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	113
Bsp143I	GATC	2 cut(s)	256, 1021
BspANI	GGCC	4 cut(s)	111, 229, 621, 750
BspCNI	CTCAG	5 cut(s)	79, 106, 571, 688, 1019
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	711
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	1 cut(s)	264
BsrDI	GCAATG	2 cut(s)	474, 912
BsrI	ACTGG	3 cut(s)	367, 546, 1181
BssECI	CCNNGG	2 cut(s)	616, 783
BssMI	GATC	2 cut(s)	256, 1021
BssSI	CACGAG	2 cut(s)	175, 591
BssT1I	CCWWGG	1 cut(s)	783
Bst2BI	CACGAG	2 cut(s)	175, 591
Bst2UI	CCWGG	3 cut(s)	144, 617, 940
Bst4CI	ACNGT	2 cut(s)	968, 1094
Bst6I	CTCTTC	3 cut(s)	56, 288, 294
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	6 cut(s)	66, 93, 362, 558, 696, 1006
BstF5I	GGATG	7 cut(s)	170, 414, 575, 809, 1079, 1113, 1162
BstH2I	RGCGCY	1 cut(s)	20
BstHHI	GCGC	2 cut(s)	19, 199
BstKTI	GATC	2 cut(s)	259, 1024
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	2 cut(s)	256, 1021
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 734
BstNI	CCWGG	3 cut(s)	144, 617, 940
BstSCI	CCNGG	5 cut(s)	111, 142, 224, 615, 938
BstSFI	CTRYAG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	113
BstV1I	GCAGC	1 cut(s)	705
BstX2I	RGATCY	1 cut(s)	1021
BstYI	RGATCY	1 cut(s)	1021
BsuRI	GGCC	4 cut(s)	111, 229, 621, 750
BtrI	CACGTC	1 cut(s)	61
BtsCI	GGATG	7 cut(s)	170, 414, 575, 809, 1079, 1113, 1162
BtsIMutI	CAGTG	3 cut(s)	553, 807, 1099
BveI	ACCTGC	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	529
CfoI	GCGC	2 cut(s)	19, 199
Cfr13I	GGNCC	8 cut(s)	109, 110, 146, 227, 350, 619, 700, 748
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	4 cut(s)	160, 284, 671, 825
CviAII	CATG	3 cut(s)	881, 1032, 1088
CviQI	GTAC	4 cut(s)	160, 284, 671, 825
DdeI	CTNAG	6 cut(s)	66, 93, 362, 558, 696, 1006
DpnI	GATC	2 cut(s)	258, 1023
DpnII	GATC	2 cut(s)	256, 1021
DraI	TTTAAA	1 cut(s)	975
DraIII	CACNNNGTG	1 cut(s)	548
DrdI	GACNNNNNNGTC	1 cut(s)	348
DseDI	GACNNNNNNGTC	1 cut(s)	348
Eam1104I	CTCTTC	3 cut(s)	56, 288, 294
EarI	CTCTTC	3 cut(s)	56, 288, 294
Eco130I	CCWWGG	1 cut(s)	783
Eco24I	GRGCYC	1 cut(s)	113
Eco47I	GGWCC	3 cut(s)	146, 350, 700
Eco57I	CTGAAG	2 cut(s)	831, 872
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRI	GAATTC	2 cut(s)	116, 1079
EcoRII	CCWGG	3 cut(s)	142, 615, 938
EcoT14I	CCWWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	3 cut(s)	884, 1035, 1091
FatI	CATG	3 cut(s)	880, 1031, 1087
Fnu4HI	GCNGC	1 cut(s)	719
FokI	GGATG	7 cut(s)	157, 401, 582, 816, 1086, 1120, 1169
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	719
FspBI	CTAG	5 cut(s)	393, 509, 528, 677, 1170
GlaI	GCGC	2 cut(s)	18, 198
GluI	GCNGC	1 cut(s)	719
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	20
HaeIII	GGCC	4 cut(s)	111, 229, 621, 750
HapII	CCGG	2 cut(s)	113, 225
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	2 cut(s)	19, 199
Hin1II	CATG	3 cut(s)	884, 1035, 1091
Hin6I	GCGC	2 cut(s)	17, 197
HinP1I	GCGC	2 cut(s)	17, 197
HincII	GTYRAC	1 cut(s)	1015
HindII	GTYRAC	1 cut(s)	1015
HinfI	GANTC	6 cut(s)	5, 136, 461, 612, 640, 935
HpaII	CCGG	2 cut(s)	113, 225
Hpy166II	GTNNAC	3 cut(s)	160, 671, 1015
Hpy188I	TCNGA	7 cut(s)	10, 96, 235, 460, 561, 697, 891
Hpy188III	TCNNGA	3 cut(s)	218, 509, 644
Hpy8I	GTNNAC	3 cut(s)	160, 671, 1015
Hpy99I	CGWCG	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	968, 1094
HpyCH4IV	ACGT	2 cut(s)	60, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 734
HpyF3I	CTNAG	6 cut(s)	66, 93, 362, 558, 696, 1006
HpySE526I	ACGT	2 cut(s)	60, 399
Hsp92II	CATG	3 cut(s)	884, 1035, 1091
HspAI	GCGC	2 cut(s)	17, 197
Kzo9I	GATC	2 cut(s)	256, 1021
LmnI	GCTCC	3 cut(s)	22, 820, 1141
Lsp1109I	GCAGC	1 cut(s)	705
LweI	GCATC	7 cut(s)	211, 420, 464, 794, 926, 991, 1098
MaeI	CTAG	5 cut(s)	393, 509, 528, 677, 1170
MaeII	ACGT	2 cut(s)	60, 399
MaeIII	GTNAC	4 cut(s)	40, 400, 548, 572
MalI	GATC	2 cut(s)	258, 1023
MboI	GATC	2 cut(s)	256, 1021
MboII	GAAGA	8 cut(s)	43, 302, 305, 311, 692, 1016, 1130, 1133
MfeI	CAATTG	2 cut(s)	656, 872
MflI	RGATCY	1 cut(s)	1021
MhlI	GDGCHC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	442
MroXI	GAANNNNTTC	1 cut(s)	765
MseI	TTAA	3 cut(s)	855, 974, 1189
MslI	CAYNNNNRTG	4 cut(s)	95, 131, 494, 1092
MspI	CCGG	2 cut(s)	113, 225
MspR9I	CCNGG	5 cut(s)	113, 144, 226, 617, 940
MunI	CAATTG	2 cut(s)	656, 872
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	3 cut(s)	144, 617, 940
MwoI	GCNNNNNNNGC	2 cut(s)	31, 734
NciI	CCSGG	2 cut(s)	113, 226
NdeII	GATC	2 cut(s)	256, 1021
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	3 cut(s)	884, 1035, 1091
NlaIV	GGNNCC	1 cut(s)	111
NmuCI	GTSAC	2 cut(s)	40, 548
PctI	GAATGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	765
PfeI	GAWTC	6 cut(s)	5, 136, 461, 612, 640, 935
PkrI	GCNGC	1 cut(s)	720
PpuMI	RGGWCCY	1 cut(s)	700
PsiI	TTATAA	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	3 cut(s)	142, 615, 938
PspGI	CCWGG	3 cut(s)	142, 615, 938
PspN4I	GGNNCC	1 cut(s)	111
PspOMI	GGGCCC	1 cut(s)	109
PspPI	GGNCC	8 cut(s)	109, 110, 146, 227, 350, 619, 700, 748
PspPPI	RGGWCCY	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	1021
RsaI	GTAC	4 cut(s)	161, 285, 672, 826
RsaNI	GTAC	4 cut(s)	160, 284, 671, 825
RseI	CAYNNNNRTG	4 cut(s)	95, 131, 494, 1092
SaqAI	TTAA	3 cut(s)	855, 974, 1189
SatI	GCNGC	1 cut(s)	719
Sau3AI	GATC	2 cut(s)	256, 1021
Sau96I	GGNCC	8 cut(s)	109, 110, 146, 227, 350, 619, 700, 748
ScrFI	CCNGG	5 cut(s)	113, 144, 226, 617, 940
SduI	GDGCHC	1 cut(s)	113
SfaNI	GCATC	7 cut(s)	211, 420, 464, 794, 926, 991, 1098
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	3 cut(s)	146, 350, 700
SmiMI	CAYNNNNRTG	4 cut(s)	95, 131, 494, 1092
SmlI	CTYRAG	1 cut(s)	1046
SmoI	CTYRAG	1 cut(s)	1046
SspMI	CTAG	5 cut(s)	393, 509, 528, 677, 1170
StyD4I	CCNGG	5 cut(s)	111, 142, 224, 615, 938
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	2 cut(s)	968, 1094
TaiI	ACGT	2 cut(s)	63, 402
TaqI	TCGA	1 cut(s)	57
TatI	WGTACW	2 cut(s)	159, 670
TfiI	GAWTC	6 cut(s)	5, 136, 461, 612, 640, 935
Tru1I	TTAA	3 cut(s)	855, 974, 1189
Tru9I	TTAA	3 cut(s)	855, 974, 1189
TscAI	CASTG	3 cut(s)	553, 814, 1099
TseFI	GTSAC	2 cut(s)	40, 548
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	2 cut(s)	40, 548
TspDTI	ATGAA	1 cut(s)	948
TspGWI	ACGGA	3 cut(s)	436, 812, 1032
TspRI	CASTG	3 cut(s)	553, 814, 1099
VpaK11BI	GGWCC	3 cut(s)	146, 350, 700
XapI	RAATTY	3 cut(s)	116, 980, 1079
XbaI	TCTAGA	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	765
XspI	CTAG	5 cut(s)	393, 509, 528, 677, 1170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.