Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009578

Physical Location & Seq

Genomic Coordinates Forward (+)

12119759 .. 12127546

Gene Structure 7788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00392530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGGATGCGGAAACGGCAGTGGAGCTTGCGAAGCAGGGCTCGACGCTTCTGCTGCTGGACGTTCCTCAACACACCCTAATCGGCATCGATACTCACATGGTTTCTGTCGGCCCCTCCTTCAAAGGCATCAAGATGATCCCTCCCGGTCCTCATTTCCTCTACTATTCCTCTTCCACCAGAGACGGAAAGGATTTCTCACCTATTACTGCCTTTTTCGTTTGTTCCGCACCATCTGAGGTAATTGTACGCAAGTGGGATCAACAAGAGGAGCGATTAGTGAAACTACCACAAGAAGAAGAGGAAGAGAGGTATTGCCGAGCTGTTAGGAGTTGGGAGTTTGACAGATATCTCGGTCCTTATAATCTGAGCCAGTATGGAGATTGGAAACGATTGTCTAGTTACATTACGAAGAGTACCATCGAACGGCTCGAACCCATTGGAGGAGAAATTACTGTTGCTTCTGAATCTTCCCTGCACAAATTCACTCCTAAAACAGCCAAGGAGAATGCTCTAGATGAGCAGTTGAAGGCTAGTACGTTCTCAACATCCAGTGACACATCGAATGCTAGAGGATGCTACTACACATCAATTCCACATGTTATCAAACATAAAGGAATCGATGTGCAGCAGCTTACTTCTTTGAATCTTGACAAGACACAATTGTTAGAAAGTGTACTACAAAAGGAATATAATGGTTCTGAGGACATGCTTCTTGGGGAGCTGCAATTTGCCTTCATTGCATTTTTGGCAATGGAAATAGGGTTGAGATTACTTCAAACTTTCATGAGTTTCAAGAGAATAAAGTGTCTCCTTTTTGGGATGTTTGAGATAGTGGACAATAGTAGGATTAGATTTCTTTTGTTGGGGAGGCAAGGACGAAGAAACAAAAAGTTCATTAAAGTCATCTACTATCAACTGAAACATGCGCTTAAGAAAGATTGCACAGATGCAAGTGGTGCATCAGCCTTGTTAGATGATTCATGGTTTTCTGCTGACAGCTTTTTGTATCATCTTTTTAAGGAGTTCTTTTTACTGCTGCAAGATGCCTCAATTGTTGACGGAGATCTTCTGTCATGGACAAGGAAACTCAAGGCGTTGCTAGAAAGCAATTTTGGATGGCAATTCGAGCAGAACAGTGCAGTTGATGGGATACATTTTGAAGAGGATGATGAGTTTGCTCCTGTTGTTGTGATGTTGGATGACCCAAGTTCGACTGAAGTACCAAGATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAR2

Protein Analysis

410

Amino Acids

46.75

Weight (kDa)

5.42

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAR2_1st	PF20981	13 - 145	1.1e-44	AAR2 N-terminal domain
AAR2	PF05282	194 - 376	2.2e-27	AAR2 C-terminal repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66510 AT1G66510 AT1G66510 AT1G66510
fragaria_vesca	FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040 FvH4_1g30040
malus_domestica	MD09G1261000.v1.1
prunus_persica	Prupe.3G158200_v2.0.a1 Prupe.3G158200_v2.0.a1
pyrus_communis	pycom09g17530
rosa_chinensis	RchiOBHm_Chr3g0492101
rosa_laevigata	RLG00000022793
rosa_multiflora	Rmu_sc0003579.1_g000001
rosa_roxburghii	Rroxscaffold_6G00392530
rosa_rugosa	Rorug03G0252000
rosa_samantha	Rh3BG338000 Rh3CG335500 Rh3DG337600
rosa_wichuraiana	Rw3G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	360
AciI	CCGC	2 cut(s)	8, 225
AclWI	GGATC	2 cut(s)	130, 264
AcsI	RAATTY	1 cut(s)	479
AfaI	GTAC	5 cut(s)	246, 415, 535, 675, 1221
AfiI	CCNNNNNNNGG	2 cut(s)	423, 440
AflII	CTTAAG	1 cut(s)	929
AflIII	ACRYGT	1 cut(s)	595
AgsI	TTSAA	6 cut(s)	121, 526, 643, 776, 793, 1160
AjuI	GAANNNNNNNTTGG	2 cut(s)	1095, 1127
AluBI	AGCT	5 cut(s)	25, 320, 631, 721, 999
AluI	AGCT	5 cut(s)	25, 320, 631, 721, 999
Alw26I	GTCTC	2 cut(s)	174, 812
AlwI	GGATC	2 cut(s)	130, 264
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	5 cut(s)	52, 625, 628, 721, 1036
ApoI	RAATTY	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	3 cut(s)	110, 146, 353
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	189
AvaII	GGWCC	2 cut(s)	146, 353
BaeI	ACNNNNGTAYC	1 cut(s)	1203
BanII	GRGCYC	1 cut(s)	41
BbvI	GCAGC	5 cut(s)	39, 637, 640, 708, 1023
BccI	CCATC	4 cut(s)	238, 425, 1110, 1139
BceAI	ACGGC	2 cut(s)	30, 440
BcgI	CGANNNNNNTGC	2 cut(s)	31, 65
BciVI	GTATCC	1 cut(s)	1143
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	2 cut(s)	174, 812
BfaI	CTAG	5 cut(s)	396, 512, 531, 567, 1100
BfrI	CTTAAG	1 cut(s)	929
BfuI	GTATCC	1 cut(s)	1143
BglII	AGATCT	1 cut(s)	1063
BisI	GCNGC	5 cut(s)	53, 626, 629, 722, 1037
BlsI	GCNGC	5 cut(s)	54, 627, 630, 723, 1038
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	2 cut(s)	146, 353
BmgT120I	GGNCC	3 cut(s)	110, 146, 353
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	6 cut(s)	93, 135, 563, 937, 968, 1033
BpuEI	CTTGAG	1 cut(s)	1073
BpuMI	CCSGG	1 cut(s)	144
Bsa29I	ATCGAT	2 cut(s)	87, 618
BsaJI	CCNNGG	1 cut(s)	498
Bsc4I	CCNNNNNNNGG	2 cut(s)	423, 440
Bse1I	ACTGG	2 cut(s)	370, 549
Bse3DI	GCAATG	2 cut(s)	735, 756
BseCI	ATCGAT	2 cut(s)	87, 618
BseDI	CCNNGG	1 cut(s)	498
BseGI	GGATG	7 cut(s)	10, 545, 578, 825, 1121, 1171, 1204
BseLI	CCNNNNNNNGG	2 cut(s)	423, 440
BseMI	GCAATG	2 cut(s)	735, 756
BseMII	CTCAG	3 cut(s)	225, 356, 690
BseNI	ACTGG	2 cut(s)	370, 549
BseRI	GAGGAG	2 cut(s)	281, 456
BseXI	GCAGC	5 cut(s)	39, 637, 640, 708, 1023
BsgI	GTGCAG	3 cut(s)	458, 644, 1158
BshFI	GGCC	1 cut(s)	111
BshVI	ATCGAT	2 cut(s)	87, 618
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	423, 440
BsmAI	GTCTC	2 cut(s)	174, 812
BsmBI	CGTCTC	1 cut(s)	174
BsmI	GAATGC	2 cut(s)	511, 568
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	135, 256, 1063
BspACI	CCGC	2 cut(s)	8, 225
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	3 cut(s)	226, 357, 691
BspDI	ATCGAT	2 cut(s)	87, 618
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	1 cut(s)	112
BspPI	GGATC	2 cut(s)	130, 264
BspTI	CTTAAG	1 cut(s)	929
BsrDI	GCAATG	2 cut(s)	735, 756
BsrI	ACTGG	2 cut(s)	370, 549
BssECI	CCNNGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	135, 256, 1063
BssT1I	CCWWGG	1 cut(s)	498
Bst4CI	ACNGT	2 cut(s)	454, 1136
Bst6I	CTCTTC	5 cut(s)	175, 291, 297, 404, 1155
BstAFI	CTTAAG	1 cut(s)	929
BstAPI	GCANNNNNTGC	1 cut(s)	956
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	234, 365, 699
BstF5I	GGATG	7 cut(s)	10, 545, 578, 825, 1121, 1171, 1204
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	3 cut(s)	138, 259, 1066
BstMAI	GTCTC	2 cut(s)	174, 812
BstMBI	GATC	3 cut(s)	135, 256, 1063
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 31, 52, 737, 746, 956, 1126
BstNSI	RCATGY	3 cut(s)	599, 709, 926
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	5 cut(s)	39, 637, 640, 708, 1023
BstX2I	RGATCY	1 cut(s)	1063
BstYI	RGATCY	1 cut(s)	1063
Bsu15I	ATCGAT	2 cut(s)	87, 618
BsuI	GTATCC	1 cut(s)	1143
BsuRI	GGCC	1 cut(s)	111
BsuTUI	ATCGAT	2 cut(s)	87, 618
BtsCI	GGATG	7 cut(s)	10, 545, 578, 825, 1121, 1171, 1204
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	3 cut(s)	24, 556, 1141
Cac8I	GCNNGC	1 cut(s)	27
CciI	TCATGA	1 cut(s)	783
CfoI	GCGC	1 cut(s)	928
Cfr13I	GGNCC	3 cut(s)	110, 146, 353
ClaI	ATCGAT	2 cut(s)	87, 618
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	5 cut(s)	245, 414, 534, 674, 1220
CviAII	CATG	7 cut(s)	97, 596, 706, 784, 923, 981, 1074
CviQI	GTAC	5 cut(s)	245, 414, 534, 674, 1220
DdeI	CTNAG	3 cut(s)	234, 365, 699
DpnI	GATC	3 cut(s)	137, 258, 1065
DpnII	GATC	3 cut(s)	135, 256, 1063
Eam1104I	CTCTTC	5 cut(s)	175, 291, 297, 404, 1155
EarI	CTCTTC	5 cut(s)	175, 291, 297, 404, 1155
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	347
Eco47I	GGWCC	2 cut(s)	146, 353
EcoRV	GATATC	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	498
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	7 cut(s)	100, 599, 709, 787, 926, 984, 1077
FalI	AAGNNNNNCTT	2 cut(s)	1010, 1042
FatI	CATG	7 cut(s)	96, 595, 705, 783, 922, 980, 1073
Fnu4HI	GCNGC	5 cut(s)	53, 626, 629, 722, 1037
FokI	GGATG	7 cut(s)	17, 532, 585, 832, 1128, 1178, 1211
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	5 cut(s)	53, 626, 629, 722, 1037
FspBI	CTAG	5 cut(s)	396, 512, 531, 567, 1100
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	5 cut(s)	53, 626, 629, 722, 1037
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	7 cut(s)	100, 599, 709, 787, 926, 984, 1077
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HinfI	GANTC	5 cut(s)	464, 615, 643, 977, 1227
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	3 cut(s)	674, 835, 1057
Hpy188I	TCNGA	4 cut(s)	235, 366, 463, 700
Hpy188III	TCNNGA	5 cut(s)	130, 512, 647, 784, 793
Hpy8I	GTNNAC	3 cut(s)	674, 835, 1057
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	127, 520, 742
HpyCH4III	ACNGT	2 cut(s)	454, 1136
HpyCH4IV	ACGT	2 cut(s)	60, 536
HpyCH4V	TGCA	9 cut(s)	475, 625, 724, 740, 942, 950, 959, 1039, 1139
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 31, 52, 737, 746, 956, 1126
HpyF3I	CTNAG	3 cut(s)	234, 365, 699
HpySE526I	ACGT	2 cut(s)	60, 536
Hsp92II	CATG	7 cut(s)	100, 599, 709, 787, 926, 984, 1077
HspAI	GCGC	1 cut(s)	926
Kzo9I	GATC	3 cut(s)	135, 256, 1063
LmnI	GCTCC	4 cut(s)	22, 268, 718, 1183
LpnPI	CCDG	8 cut(s)	20, 41, 157, 190, 383, 485, 562, 1194
Lsp1109I	GCAGC	5 cut(s)	39, 637, 640, 708, 1023
LweI	GCATC	6 cut(s)	93, 135, 563, 937, 968, 1033
MaeI	CTAG	5 cut(s)	396, 512, 531, 567, 1100
MaeII	ACGT	2 cut(s)	60, 536
MaeIII	GTNAC	2 cut(s)	398, 551
MalI	GATC	3 cut(s)	137, 258, 1065
MboI	GATC	3 cut(s)	135, 256, 1063
MboII	GAAGA	9 cut(s)	162, 305, 308, 314, 421, 459, 891, 1058, 1172
MfeI	CAATTG	2 cut(s)	659, 1050
MflI	RGATCY	1 cut(s)	1063
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	9 cut(s)	240, 447, 479, 588, 659, 725, 1050, 1108, 1121
MmeI	TCCRAC	1 cut(s)	1176
MseI	TTAA	3 cut(s)	897, 930, 1017
MslI	CAYNNNNRTG	1 cut(s)	131
MspCI	CTTAAG	1 cut(s)	929
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
MunI	CAATTG	2 cut(s)	659, 1050
Mva1269I	GAATGC	2 cut(s)	511, 568
MwoI	GCNNNNNNNGC	7 cut(s)	14, 31, 52, 737, 746, 956, 1126
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	135, 256, 1063
NlaIII	CATG	7 cut(s)	100, 599, 709, 787, 926, 984, 1077
NlaIV	GGNNCC	1 cut(s)	112
NmeAIII	GCCGAG	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	551
NspI	RCATGY	3 cut(s)	599, 709, 926
PagI	TCATGA	1 cut(s)	783
PciI	ACATGT	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	426
PctI	GAATGC	2 cut(s)	511, 568
PfeI	GAWTC	5 cut(s)	464, 615, 643, 977, 1227
PkrI	GCNGC	5 cut(s)	54, 627, 630, 723, 1038
PscI	ACATGT	1 cut(s)	595
PsiI	TTATAA	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	112
PspPI	GGNCC	3 cut(s)	110, 146, 353
PsuI	RGATCY	1 cut(s)	1063
RsaI	GTAC	5 cut(s)	246, 415, 535, 675, 1221
RsaNI	GTAC	5 cut(s)	245, 414, 534, 674, 1220
RseI	CAYNNNNRTG	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	897, 930, 1017
SatI	GCNGC	5 cut(s)	53, 626, 629, 722, 1037
Sau3AI	GATC	3 cut(s)	135, 256, 1063
Sau96I	GGNCC	3 cut(s)	110, 146, 353
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	41
SfaNI	GCATC	6 cut(s)	93, 135, 563, 937, 968, 1033
SinI	GGWCC	2 cut(s)	146, 353
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	929, 1088
SmoI	CTYRAG	2 cut(s)	929, 1088
Sse9I	AATT	9 cut(s)	240, 447, 479, 588, 659, 725, 1050, 1108, 1121
SsiI	CCGC	2 cut(s)	8, 225
SspMI	CTAG	5 cut(s)	396, 512, 531, 567, 1100
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	454, 1136
TaiI	ACGT	2 cut(s)	63, 539
TaqI	TCGA	8 cut(s)	41, 87, 420, 429, 560, 618, 1125, 1211
TaqII	GACCGA	1 cut(s)	341
TasI	AATT	9 cut(s)	240, 447, 479, 588, 659, 725, 1050, 1108, 1121
TatI	WGTACW	1 cut(s)	673
TfiI	GAWTC	5 cut(s)	464, 615, 643, 977, 1227
Tru1I	TTAA	3 cut(s)	897, 930, 1017
Tru9I	TTAA	3 cut(s)	897, 930, 1017
TscAI	CASTG	3 cut(s)	24, 556, 1141
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	5 cut(s)	52, 625, 628, 721, 1036
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	4 cut(s)	724, 772, 883, 969
TspGWI	ACGGA	2 cut(s)	198, 1074
TspRI	CASTG	3 cut(s)	24, 556, 1141
Vha464I	CTTAAG	1 cut(s)	929
VpaK11BI	GGWCC	2 cut(s)	146, 353
XapI	RAATTY	1 cut(s)	479
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	3 cut(s)	599, 709, 926
XspI	CTAG	5 cut(s)	396, 512, 531, 567, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.