Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Reverse (-)

24927246 .. 24929054

Gene Structure 1809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66810.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGAAACTCGCGGCGTCTACTGTTACAGATCTAGCTTGCGTAACGGCGATAAACTCATCGCCGCCTCCACTATCACCGATCTCTGAACAAAGCTTCAACAACAAACACCAAGAAGAGTTCGCCGCAAGCTTCGCATCACTCTACAACTCAATCTTCTCACCGGAATCTCTCTCTCCTTCTCCTCCGTCCTCTTCCTCACCACCATCTCGCGTCGATACAACTACAGAGCATCGTCTTCTTCAAGCGAAACTTATCCTCGAGTACGACGAACTCAACGAGCATTACGAGCTTTGCCTTAACCGTCTTCAATCTCTAATGACGGAACTTGACTCTCTTCGTCACGAAAACGATTCTCTCCGCTTTGAAAACTCAGATCTACTCAAACTTATTCGTATCTCTACTTCATCCTCCTCCTCCGTCTCTCCTCCGGCGCCGATCCATAACCGTCAATTCCGTCACCAGATCTCCGATTCTCGCTCCGCGAAGAGAAACAATCAAGAGAGAAACTCGTTGCCTAAGAGCATCTCCGTCAGATCTCAAGGATATCTCAAGATCAACCATGGATTTGAAGCGTCAGATCTCCAAACGAGTCAACTCAGCTCTAACTCGGTGTCTTCTTCTCAAAAGGTGTGTGTAGTACAAACAAAAGGGGAGAGAGAAGCATTAGAGCTTGAGGTATATCGTCAAGGGATGATGAAGACGGAGCTTTGTAACAAATGGCAAGAGACTGGAGCTTGTTGTTACGGCGATAATTGCCAATTCGCTCACGGAATCGACGAGCTACGTCCTGTGATTAGGCATCCACGCTACAAAACTGAGGTTTGCAGAATGATGGTCACCGGAGCTATGTGTCCGTACGGTCACCGTTGCCATTTCCGTCACTCACTTACTGATCAAGAGAGGATGATGATGATGATGCTTACTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

310

Amino Acids

35.11

Weight (kDa)

6.86

Isoelectric Point (pI)

63.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	234 - 258	5.5e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	20
AccII	CGCG	3 cut(s)	14, 213, 485
AciI	CCGC	5 cut(s)	14, 65, 126, 361, 483
AclWI	GGATC	1 cut(s)	433
AcyI	GRCGYC	2 cut(s)	17, 434
AfaI	GTAC	3 cut(s)	266, 642, 860
AgsI	TTSAA	5 cut(s)	100, 245, 311, 368, 572
Alw26I	GTCTC	2 cut(s)	427, 722
AlwI	GGATC	1 cut(s)	433
Ama87I	CYCGRG	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	436
AsuHPI	GGTGA	6 cut(s)	69, 153, 192, 452, 832, 857
AvaI	CYCGRG	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	433
BarI	GAAGNNNNNNTAC	2 cut(s)	388, 420
BbsI	GAAGAC	4 cut(s)	230, 299, 609, 707
BccI	CCATC	2 cut(s)	214, 829
BceAI	ACGGC	2 cut(s)	63, 763
BclI	TGATCA	1 cut(s)	895
BcoDI	GTCTC	2 cut(s)	427, 722
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	225
BfoI	RGCGCY	1 cut(s)	437
BglII	AGATCT	5 cut(s)	31, 376, 465, 536, 580
BisI	GCNGC	3 cut(s)	15, 65, 126
BlsI	GCNGC	3 cut(s)	16, 66, 127
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	435
BmsI	GCATC	5 cut(s)	146, 241, 534, 811, 909
BpiI	GAAGAC	4 cut(s)	230, 299, 609, 707
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	753
BpuEI	CTTGAG	3 cut(s)	525, 536, 695
BsaHI	GRCGYC	2 cut(s)	17, 434
BsaJI	CCNNGG	1 cut(s)	562
BsaWI	WCCGGW	2 cut(s)	163, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bse1I	ACTGG	1 cut(s)	736
BseDI	CCNNGG	1 cut(s)	562
BseGI	GGATG	4 cut(s)	407, 699, 802, 912
BseMII	CTCAG	3 cut(s)	387, 613, 810
BseNI	ACTGG	1 cut(s)	736
BseRI	GAGGAG	4 cut(s)	174, 403, 406, 417
Bsh1236I	CGCG	3 cut(s)	14, 213, 485
BshNI	GGYRCC	1 cut(s)	433
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	3 cut(s)	164, 431, 843
BsiWI	CGTACG	1 cut(s)	858
BsmAI	GTCTC	2 cut(s)	427, 722
BsmBI	CGTCTC	1 cut(s)	427
BsoBI	CYCGRG	1 cut(s)	260
Bsp143I	GATC	9 cut(s)	31, 81, 376, 438, 465, 536, 555, 580, 895
Bsp19I	CCATGG	1 cut(s)	562
BspACI	CCGC	5 cut(s)	14, 65, 126, 361, 483
BspCNI	CTCAG	3 cut(s)	386, 612, 811
BspFNI	CGCG	3 cut(s)	14, 213, 485
BspLI	GGNNCC	1 cut(s)	435
BspPI	GGATC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	736
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	9 cut(s)	31, 81, 376, 438, 465, 536, 555, 580, 895
BssNI	GRCGYC	2 cut(s)	17, 434
BssT1I	CCWWGG	1 cut(s)	562
Bst4CI	ACNGT	5 cut(s)	25, 305, 449, 863, 869
Bst6I	CTCTTC	4 cut(s)	111, 199, 342, 482
BstACI	GRCGYC	2 cut(s)	17, 434
BstC8I	GCNNGC	2 cut(s)	40, 130
BstDEI	CTNAG	4 cut(s)	373, 519, 599, 819
BstDSI	CCRYGG	1 cut(s)	562
BstEII	GGTNACC	2 cut(s)	838, 863
BstF5I	GGATG	4 cut(s)	407, 699, 802, 912
BstFNI	CGCG	3 cut(s)	14, 213, 485
BstH2I	RGCGCY	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	436
BstKTI	GATC	9 cut(s)	34, 84, 379, 441, 468, 539, 558, 583, 898
BstMAI	GTCTC	2 cut(s)	427, 722
BstMBI	GATC	9 cut(s)	31, 81, 376, 438, 465, 536, 555, 580, 895
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 289, 756
BstPI	GGTNACC	2 cut(s)	838, 863
BstSFI	CTRYAG	1 cut(s)	225
BstUI	CGCG	3 cut(s)	14, 213, 485
BstV2I	GAAGAC	4 cut(s)	230, 299, 609, 707
BstX2I	RGATCY	5 cut(s)	31, 376, 465, 536, 580
BstYI	RGATCY	5 cut(s)	31, 376, 465, 536, 580
BtgI	CCRYGG	1 cut(s)	562
BtgZI	GCGATG	1 cut(s)	45
BtsCI	GGATG	4 cut(s)	407, 699, 802, 912
Cac8I	GCNNGC	2 cut(s)	40, 130
CfoI	GCGC	1 cut(s)	436
CseI	GACGC	3 cut(s)	6, 202, 564
Csp6I	GTAC	3 cut(s)	265, 641, 859
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	3 cut(s)	265, 641, 859
DdeI	CTNAG	4 cut(s)	373, 519, 599, 819
DinI	GGCGCC	1 cut(s)	435
DpnI	GATC	9 cut(s)	33, 83, 378, 440, 467, 538, 557, 582, 897
DpnII	GATC	9 cut(s)	31, 81, 376, 438, 465, 536, 555, 580, 895
Eam1104I	CTCTTC	4 cut(s)	111, 199, 342, 482
EarI	CTCTTC	4 cut(s)	111, 199, 342, 482
Eco130I	CCWWGG	1 cut(s)	562
Eco32I	GATATC	1 cut(s)	548
Eco88I	CYCGRG	1 cut(s)	260
Eco91I	GGTNACC	2 cut(s)	838, 863
EcoO65I	GGTNACC	2 cut(s)	838, 863
EcoRV	GATATC	1 cut(s)	548
EcoT14I	CCWWGG	1 cut(s)	562
EgeI	GGCGCC	1 cut(s)	435
EheI	GGCGCC	1 cut(s)	435
ErhI	CCWWGG	1 cut(s)	562
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	1 cut(s)	566
FaiI	YATR	4 cut(s)	444, 564, 682, 851
FalI	AAGNNNNNCTT	2 cut(s)	237, 269
FatI	CATG	1 cut(s)	562
FbaI	TGATCA	1 cut(s)	895
FblI	GTMKAC	1 cut(s)	20
Fnu4HI	GCNGC	3 cut(s)	15, 65, 126
FokI	GGATG	4 cut(s)	394, 706, 789, 919
Fsp4HI	GCNGC	3 cut(s)	15, 65, 126
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	435
GluI	GCNGC	3 cut(s)	15, 65, 126
GsuI	CTGGAG	1 cut(s)	753
HaeII	RGCGCY	1 cut(s)	437
HapII	CCGG	3 cut(s)	164, 431, 843
HgaI	GACGC	3 cut(s)	6, 202, 564
HhaI	GCGC	1 cut(s)	436
Hin1I	GRCGYC	2 cut(s)	17, 434
Hin1II	CATG	1 cut(s)	566
Hin6I	GCGC	1 cut(s)	434
HinP1I	GCGC	1 cut(s)	434
HincII	GTYRAC	1 cut(s)	596
HindII	GTYRAC	1 cut(s)	596
HindIII	AAGCTT	2 cut(s)	94, 130
HinfI	GANTC	6 cut(s)	167, 332, 353, 473, 592, 774
HpaII	CCGG	3 cut(s)	164, 431, 843
HphI	GGTGA	6 cut(s)	69, 153, 192, 452, 832, 857
Hpy166II	GTNNAC	2 cut(s)	21, 596
Hpy188I	TCNGA	5 cut(s)	88, 376, 472, 536, 580
Hpy188III	TCNNGA	4 cut(s)	344, 500, 553, 899
Hpy8I	GTNNAC	2 cut(s)	21, 596
Hpy99I	CGWCG	3 cut(s)	218, 272, 782
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	5 cut(s)	25, 305, 449, 863, 869
HpyCH4IV	ACGT	1 cut(s)	787
HpyCH4V	TGCA	1 cut(s)	828
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 289, 756
HpyF3I	CTNAG	4 cut(s)	373, 519, 599, 819
HpySE526I	ACGT	1 cut(s)	787
Hsp92I	GRCGYC	2 cut(s)	17, 434
Hsp92II	CATG	1 cut(s)	566
HspAI	GCGC	1 cut(s)	434
KasI	GGCGCC	1 cut(s)	433
Ksp22I	TGATCA	1 cut(s)	895
Kzo9I	GATC	9 cut(s)	31, 81, 376, 438, 465, 536, 555, 580, 895
LmnI	GCTCC	4 cut(s)	485, 706, 734, 845
LpnPI	CCDG	6 cut(s)	177, 444, 476, 717, 804, 856
LweI	GCATC	5 cut(s)	146, 241, 534, 811, 909
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	787
MaeIII	GTNAC	9 cut(s)	25, 43, 341, 458, 713, 743, 838, 863, 881
MalI	GATC	9 cut(s)	33, 83, 378, 440, 467, 538, 557, 582, 897
MboI	GATC	9 cut(s)	31, 81, 376, 438, 465, 536, 555, 580, 895
MflI	RGATCY	5 cut(s)	31, 376, 465, 536, 580
MluCI	AATT	3 cut(s)	452, 754, 761
Mly113I	GGCGCC	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	326, 601
MseI	TTAA	1 cut(s)	300
MspI	CCGG	3 cut(s)	164, 431, 843
MvnI	CGCG	3 cut(s)	14, 213, 485
MwoI	GCNNNNNNNGC	3 cut(s)	134, 289, 756
NarI	GGCGCC	1 cut(s)	434
NcoI	CCATGG	1 cut(s)	562
NdeII	GATC	9 cut(s)	31, 81, 376, 438, 465, 536, 555, 580, 895
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	5 cut(s)	341, 458, 838, 863, 881
PaeR7I	CTCGAG	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	4 cut(s)	267, 276, 285, 777
PfeI	GAWTC	4 cut(s)	167, 353, 473, 774
Pfl23II	CGTACG	1 cut(s)	858
PkrI	GCNGC	3 cut(s)	16, 66, 127
PleI	GAGTC	2 cut(s)	326, 600
PluTI	GGCGCC	1 cut(s)	437
PpsI	GAGTC	2 cut(s)	326, 600
PspEI	GGTNACC	2 cut(s)	838, 863
PspLI	CGTACG	1 cut(s)	858
PspN4I	GGNNCC	1 cut(s)	435
PspXI	VCTCGAGB	1 cut(s)	260
PsuI	RGATCY	5 cut(s)	31, 376, 465, 536, 580
RsaI	GTAC	3 cut(s)	266, 642, 860
RsaNI	GTAC	3 cut(s)	265, 641, 859
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	3 cut(s)	15, 65, 126
Sau3AI	GATC	9 cut(s)	31, 81, 376, 438, 465, 536, 555, 580, 895
SchI	GAGTC	2 cut(s)	326, 601
SfaNI	GCATC	5 cut(s)	146, 241, 534, 811, 909
SfcI	CTRYAG	1 cut(s)	225
SfoI	GGCGCC	1 cut(s)	435
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	4 cut(s)	260, 540, 551, 674
SmoI	CTYRAG	4 cut(s)	260, 540, 551, 674
Sse9I	AATT	3 cut(s)	452, 754, 761
SsiI	CCGC	5 cut(s)	14, 65, 126, 361, 483
SspDI	GGCGCC	1 cut(s)	433
SspMI	CTAG	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	5 cut(s)	25, 305, 449, 863, 869
TaiI	ACGT	1 cut(s)	790
TaqI	TCGA	3 cut(s)	216, 261, 777
TasI	AATT	3 cut(s)	452, 754, 761
TatI	WGTACW	1 cut(s)	640
TauI	GCSGC	3 cut(s)	17, 67, 128
TfiI	GAWTC	4 cut(s)	167, 353, 473, 774
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TseFI	GTSAC	5 cut(s)	341, 458, 838, 863, 881
Tsp45I	GTSAC	5 cut(s)	341, 458, 838, 863, 881
TspDTI	ATGAA	2 cut(s)	396, 713
TspGWI	ACGGA	9 cut(s)	177, 338, 409, 446, 520, 719, 786, 846, 869
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	20
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.