Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Forward (+)

25383078 .. 25384078

Gene Structure 1001 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG142800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCAAAGCAAGCAAGCCATGGAGACCAACAGTAGTGCCGCCTCCCCAAACTCATCAGCGTTATCCGACTCTACTAACCAACCTGCAGCTGCATCAGATTTTGCCAGCTCCATGTATAGCTCCATTTTCCCGCAAAAGTTCACTCTCCCAAGTTCCCTTTCTCTAACGCCCTCAACGCTCTCCGATGACGAGGGCGACCACCACCACGACGACTGCAACACCATGCACCGCCTCGGCCAAGCGCAGCTCGTTCTAGAGTGCGAGGAGCTTCGCAACCACCTCAGGGACCTCAACAACGAGGTAGACTCCCTTCGCCGCGAGAACGCTGTCCTCCGATCTGCAAACACCGATTTGGTCAAGCTTCTGTCGTCCCCGGCAGCTCTCCACAACTTCCTCAATGCGTCCACCTATCTGAACAGTTTCATGGCCGATGAGTTGAAGCCACTCGGAGTGGGAGTATTTAGTCCTCGTGATGGCGACGAGGCCTCCGATATCAGCCCCACAAGCGTCATCATGGAGCGCAACCGGTTCAATGCCGACCGGTTCTCACTCCCGAAAAGCATTTCGGTTCGCTCCAGCGGTTACAAAAAGGTGAACCCATCATTTGGTGCCAACCAACTGCTGCAGGATGGTCCTCCTGCAAGGGTACCCGAAGAGGGGAGTAGTGGCGCAATGCAAGTGAAAGTGAAGGCTTATAACCAAGGGATGTTGAAGACGGAGCTTTGCAACAAGTGGGAGGAGAGCGGCGCGTGCCCTTATGGAAACAACTGTCAGTTCGCTCACGGCGTTAGAGAACTGCGTCCGGTGATGAGGCACCCGCGCTACAAGACCCAGATCTGCAGGATGGTCCTCACCCGCGGGACTTGTCCCTACGGTCACCGCTGTCACTTCCGCCACTCCCTCAACGACCAACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

306

Amino Acids

33.9

Weight (kDa)

7.18

Isoelectric Point (pI)

47.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	238 - 262	1e-10	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	696
Acc36I	ACCTGC	1 cut(s)	91
Acc65I	GGTACC	1 cut(s)	646
AccB1I	GGYRCC	3 cut(s)	608, 646, 813
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	744
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	4 cut(s)	318, 749, 820, 858
AcoI	YGGCCR	2 cut(s)	235, 426
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 656, 657
AgeI	ACCGGT	2 cut(s)	525, 540
AgsI	TTSAA	3 cut(s)	439, 532, 712
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	8 cut(s)	89, 108, 120, 247, 268, 361, 380, 721
AluI	AGCT	8 cut(s)	89, 108, 120, 247, 268, 361, 380, 721
Alw26I	GTCTC	1 cut(s)	17
AoxI	GGCC	3 cut(s)	235, 426, 483
ApeKI	GCWGC	5 cut(s)	86, 89, 244, 377, 622
AsiGI	ACCGGT	2 cut(s)	525, 540
Asp700I	GAANNNNTTC	1 cut(s)	419
Asp718I	GGTACC	1 cut(s)	646
AspLEI	GCGC	5 cut(s)	244, 522, 671, 749, 822
AspS9I	GGNCC	3 cut(s)	286, 632, 847
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	4 cut(s)	604, 817, 844, 869
AvaII	GGWCC	3 cut(s)	286, 632, 847
AxyI	CCTNAGG	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	755
BanI	GGYRCC	3 cut(s)	608, 646, 813
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	719
BbvI	GCAGC	5 cut(s)	76, 98, 256, 389, 609
BccI	CCATC	4 cut(s)	467, 607, 623, 838
BceAI	ACGGC	1 cut(s)	799
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	3 cut(s)	84, 623, 838
BfuAI	ACCTGC	1 cut(s)	91
BglII	AGATCT	1 cut(s)	834
BisI	GCNGC	8 cut(s)	39, 87, 90, 245, 316, 378, 623, 745
BlsI	GCNGC	8 cut(s)	40, 88, 91, 246, 317, 379, 624, 746
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	3 cut(s)	286, 632, 847
BmgT120I	GGNCC	3 cut(s)	286, 632, 847
BmiI	GGNNCC	4 cut(s)	287, 610, 648, 815
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	101
BpiI	GAAGAC	1 cut(s)	719
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	1 cut(s)	559
BpuMI	CCSGG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	18, 232, 372, 700, 856
BsaWI	WCCGGW	3 cut(s)	525, 540, 802
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 470, 471, 500
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 656, 657
Bse118I	RCCGGY	2 cut(s)	525, 540
Bse21I	CCTNAGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	678
BseDI	CCNNGG	5 cut(s)	18, 232, 372, 700, 856
BseGI	GGATG	3 cut(s)	634, 711, 849
BseLI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 656, 657
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	1 cut(s)	295
BseRI	GAGGAG	2 cut(s)	278, 752
BseSI	GKGCMC	1 cut(s)	755
BseXI	GCAGC	5 cut(s)	76, 98, 256, 389, 609
Bsh1236I	CGCG	4 cut(s)	318, 749, 820, 858
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	237, 428, 485
BshNI	GGYRCC	3 cut(s)	608, 646, 813
BshTI	ACCGGT	2 cut(s)	525, 540
BsiEI	CGRYCG	1 cut(s)	541
BsiSI	CCGG	4 cut(s)	374, 526, 541, 803
BslFI	GGGAC	4 cut(s)	299, 355, 852, 874
BslI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 656, 657
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	4 cut(s)	299, 355, 852, 874
BsnI	GGCC	3 cut(s)	237, 428, 485
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	755
Bsp143I	GATC	2 cut(s)	335, 834
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	3 cut(s)	237, 428, 485
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	4 cut(s)	318, 749, 820, 858
BspLI	GGNNCC	4 cut(s)	287, 610, 648, 815
BspMAI	CTGCAG	3 cut(s)	88, 627, 842
BspMI	ACCTGC	1 cut(s)	91
BspT107I	GGYRCC	3 cut(s)	608, 646, 813
BspTNI	GGTCTC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	744
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	2 cut(s)	525, 540
BssAI	RCCGGY	2 cut(s)	525, 540
BssECI	CCNNGG	5 cut(s)	18, 232, 372, 700, 856
BssMI	GATC	2 cut(s)	335, 834
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	18, 700
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	4 cut(s)	32, 419, 770, 875
Bst6I	CTCTTC	1 cut(s)	648
BstC8I	GCNNGC	4 cut(s)	11, 15, 106, 751
BstDEI	CTNAG	1 cut(s)	281
BstDSI	CCRYGG	2 cut(s)	18, 856
BstEII	GGTNACC	1 cut(s)	875
BstF5I	GGATG	3 cut(s)	634, 711, 849
BstFNI	CGCG	4 cut(s)	318, 749, 820, 858
BstHHI	GCGC	5 cut(s)	244, 522, 671, 749, 822
BstKTI	GATC	2 cut(s)	338, 837
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	335, 834
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 175, 504, 750
BstPI	GGTNACC	1 cut(s)	875
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	3 cut(s)	84, 623, 838
BstSLI	GKGCMC	1 cut(s)	755
BstUI	CGCG	4 cut(s)	318, 749, 820, 858
BstV1I	GCAGC	5 cut(s)	76, 98, 256, 389, 609
BstV2I	GAAGAC	1 cut(s)	719
BstX2I	RGATCY	1 cut(s)	834
BstYI	RGATCY	1 cut(s)	834
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	237, 428, 485
BtgI	CCRYGG	2 cut(s)	18, 856
BtsCI	GGATG	3 cut(s)	634, 711, 849
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	4 cut(s)	11, 15, 106, 751
CfoI	GCGC	5 cut(s)	244, 522, 671, 749, 822
Cfr10I	RCCGGY	2 cut(s)	525, 540
Cfr13I	GGNCC	3 cut(s)	286, 632, 847
Cfr42I	CCGCGG	1 cut(s)	859
CseI	GACGC	3 cut(s)	390, 496, 788
Csp6I	GTAC	1 cut(s)	647
CspAI	ACCGGT	2 cut(s)	525, 540
CviAII	CATG	5 cut(s)	19, 112, 223, 424, 514
CviQI	GTAC	1 cut(s)	647
DdeI	CTNAG	1 cut(s)	281
DpnI	GATC	2 cut(s)	337, 836
DpnII	GATC	2 cut(s)	335, 834
EaeI	YGGCCR	2 cut(s)	235, 426
Eam1104I	CTCTTC	1 cut(s)	648
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	1 cut(s)	881
Eco130I	CCWWGG	2 cut(s)	18, 700
Eco147I	AGGCCT	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	3 cut(s)	286, 632, 847
Eco81I	CCTNAGG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	875
EcoO109I	RGGNCCY	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	875
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	18, 700
ErhI	CCWWGG	2 cut(s)	18, 700
FaeI	CATG	5 cut(s)	22, 115, 226, 427, 517
FaiI	YATR	9 cut(s)	20, 113, 117, 224, 425, 515, 696, 759, 915
FaqI	GGGAC	4 cut(s)	299, 355, 852, 874
FatI	CATG	5 cut(s)	18, 111, 222, 423, 513
FauI	CCCGC	4 cut(s)	138, 825, 851, 863
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	8 cut(s)	39, 87, 90, 245, 316, 378, 623, 745
FokI	GGATG	3 cut(s)	641, 718, 856
Fsp4HI	GCNGC	8 cut(s)	39, 87, 90, 245, 316, 378, 623, 745
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	5 cut(s)	243, 521, 670, 748, 821
GluI	GCNGC	8 cut(s)	39, 87, 90, 245, 316, 378, 623, 745
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	237, 428, 485
HapII	CCGG	4 cut(s)	374, 526, 541, 803
HgaI	GACGC	3 cut(s)	390, 496, 788
HhaI	GCGC	5 cut(s)	244, 522, 671, 749, 822
Hin1II	CATG	5 cut(s)	22, 115, 226, 427, 517
Hin6I	GCGC	5 cut(s)	242, 520, 669, 747, 820
HinP1I	GCGC	5 cut(s)	242, 520, 669, 747, 820
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	68, 305
HpaII	CCGG	4 cut(s)	374, 526, 541, 803
HphI	GGTGA	4 cut(s)	604, 817, 844, 869
Hpy166II	GTNNAC	4 cut(s)	141, 304, 405, 595
Hpy188I	TCNGA	7 cut(s)	67, 97, 184, 335, 414, 449, 490
Hpy188III	TCNNGA	3 cut(s)	254, 470, 553
Hpy8I	GTNNAC	4 cut(s)	141, 304, 405, 595
Hpy99I	CGWCG	2 cut(s)	212, 482
HpyAV	CCTTC	2 cut(s)	320, 682
HpyCH4III	ACNGT	4 cut(s)	32, 419, 770, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 175, 504, 750
HpyF3I	CTNAG	1 cut(s)	281
Hsp92II	CATG	5 cut(s)	22, 115, 226, 427, 517
HspAI	GCGC	5 cut(s)	242, 520, 669, 747, 820
KpnI	GGTACC	1 cut(s)	650
KspI	CCGCGG	1 cut(s)	859
Kzo9I	GATC	2 cut(s)	335, 834
LmnI	GCTCC	6 cut(s)	113, 125, 265, 517, 578, 718
Lsp1109I	GCAGC	5 cut(s)	76, 98, 256, 389, 609
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	3 cut(s)	581, 875, 884
MalI	GATC	2 cut(s)	337, 836
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	2 cut(s)	335, 834
MboII	GAAGA	2 cut(s)	665, 724
MflI	RGATCY	1 cut(s)	834
MhlI	GDGCHC	1 cut(s)	755
MlyI	GAGTC	2 cut(s)	62, 299
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	419
MspA1I	CMGCKG	4 cut(s)	89, 579, 858, 882
MspI	CCGG	4 cut(s)	374, 526, 541, 803
MspR9I	CCNGG	1 cut(s)	374
MvnI	CGCG	4 cut(s)	318, 749, 820, 858
MwoI	GCNNNNNNNGC	4 cut(s)	10, 175, 504, 750
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	335, 834
NlaIII	CATG	5 cut(s)	22, 115, 226, 427, 517
NlaIV	GGNNCC	4 cut(s)	287, 610, 648, 815
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	875, 884
PceI	AGGCCT	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	2 cut(s)	486, 783
PdmI	GAANNNNTTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	605
PinAI	ACCGGT	2 cut(s)	525, 540
PkrI	GCNGC	8 cut(s)	40, 88, 91, 246, 317, 379, 624, 746
PleI	GAGTC	2 cut(s)	62, 299
PpsI	GAGTC	2 cut(s)	62, 299
PpuMI	RGGWCCY	1 cut(s)	286
PsiI	TTATAA	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	875
PspN4I	GGNNCC	4 cut(s)	287, 610, 648, 815
PspPI	GGNCC	3 cut(s)	286, 632, 847
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	3 cut(s)	88, 627, 842
PsuI	RGATCY	1 cut(s)	834
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
SacII	CCGCGG	1 cut(s)	859
SatI	GCNGC	8 cut(s)	39, 87, 90, 245, 316, 378, 623, 745
Sau3AI	GATC	2 cut(s)	335, 834
Sau96I	GGNCC	3 cut(s)	286, 632, 847
SchI	GAGTC	2 cut(s)	62, 299
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	755
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	3 cut(s)	84, 623, 838
Sfr303I	CCGCGG	1 cut(s)	859
SgrBI	CCGCGG	1 cut(s)	859
SinI	GGWCC	3 cut(s)	286, 632, 847
SseBI	AGGCCT	1 cut(s)	485
SspMI	CTAG	1 cut(s)	254
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	18, 700
TaaI	ACNGT	4 cut(s)	32, 419, 770, 875
TauI	GCSGC	3 cut(s)	41, 318, 747
TseFI	GTSAC	2 cut(s)	875, 884
TseI	GCWGC	5 cut(s)	86, 89, 244, 377, 622
Tsp45I	GTSAC	2 cut(s)	875, 884
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	731
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	3 cut(s)	286, 632, 847
XbaI	TCTAGA	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.