Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Forward (+)

27911656 .. 27912901

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G011780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAAAGCAAGCAAGCCATGGAGACCAACAGTAGTGCCGCCTCCCCAAACTCATCAGCGTTATCCGACTCTACTAACCAACCTGCAGCTGCATCAGATTTTGCCAGCTCCATGTATAGCTCCATTTTCCCGCAAAAGTTCACTCTCCCAAGTTCCCTTTCTCTAACGCCCTCAACGCTCTCCGATGACGACGGCGACCACCACGACGATGACTGCAACACCATGCACCGCCTCGGCCAAGCTCAGCTCGTTCTAGAGTGTGAGGAGCTTCGCAACCACCTCAGGGACCTCAACAACGAGGTAGACTCGCTTCGCCGCGAGAACGCTGTCCTCCGATCTGCAAACACCGATTTGGTCAAGCTTCTGTCGTCCCCGGTAGCTCTCCACAACTTCCTCAATGCCTCCACCTATCTGAACACTTTCATGGCCGATGAGTTGAAGCCACTGGGAGTGGGAGTATTTAGTCCTCGTGATGGCGACGAGGCCTCCGATATCAGCCCCACTAGCGTCATCATGGAGCGCAACCGCTTCAATGCCGACCGGTTCTCACTGCCGAAAAGCATTTCGGTTCGCTCCAGAGGTTACAAAAAGGTGAACCCATCATTTGGTGCCAACCAACTGCTGAAGGATGGTCCTGCAAGGGTACCCGAAGAGGGGAGTAGTGGCGCAATGCAAGTGAAAGTGAAGGCTTATAACCAAGGGATGTTGAAGACGGAGCTTTGCAACAAGTGGGAGGAGAGCGGCGCGTGCCCTTATGGAGACAACTGTCAGTTCGCTCACGGCGTTAGAGAACTGCGTCCGGTGATGAGGCACCCGCGCTACAAGACCCAGATCTGCAGGATGGTCCTCACCCGCGGGACTTGTCCCTACGGTCACCGCTGTCACTTCCGCCACTCCCTCAACGACCAACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

305

Amino Acids

33.88

Weight (kDa)

7.16

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	237 - 261	3.8e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	241 - 260	1.7e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	91
Acc65I	GGTACC	1 cut(s)	643
AccB1I	GGYRCC	3 cut(s)	608, 643, 810
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	4 cut(s)	318, 746, 817, 855
AcoI	YGGCCR	2 cut(s)	235, 426
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	1 cut(s)	645
AfiI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
AgeI	ACCGGT	1 cut(s)	540
AgsI	TTSAA	3 cut(s)	439, 532, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	9 cut(s)	89, 108, 120, 242, 247, 268, 361, 380, 718
AluI	AGCT	9 cut(s)	89, 108, 120, 242, 247, 268, 361, 380, 718
Alw26I	GTCTC	2 cut(s)	17, 753
AoxI	GGCC	3 cut(s)	235, 426, 483
ApeKI	GCWGC	2 cut(s)	86, 89
AsiGI	ACCGGT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	419
Asp718I	GGTACC	1 cut(s)	643
AspLEI	GCGC	4 cut(s)	522, 668, 746, 819
AspS9I	GGNCC	3 cut(s)	286, 632, 844
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	4 cut(s)	604, 814, 841, 866
AvaII	GGWCC	3 cut(s)	286, 632, 844
AxyI	CCTNAGG	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	752
BanI	GGYRCC	3 cut(s)	608, 643, 810
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	76, 98
BccI	CCATC	4 cut(s)	467, 607, 623, 835
BceAI	ACGGC	2 cut(s)	208, 796
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	2 cut(s)	17, 753
BfaI	CTAG	2 cut(s)	254, 504
BfmI	CTRYAG	2 cut(s)	84, 835
BfuAI	ACCTGC	1 cut(s)	91
BglII	AGATCT	1 cut(s)	831
BisI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	5 cut(s)	40, 88, 91, 317, 743
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	3 cut(s)	286, 632, 844
BmgT120I	GGNCC	3 cut(s)	286, 632, 844
BmiI	GGNNCC	4 cut(s)	287, 610, 645, 812
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	455
BmsI	GCATC	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	455
BoxI	GACNNNNGTC	1 cut(s)	765
BpiI	GAAGAC	1 cut(s)	716
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	1 cut(s)	559
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	18, 232, 372, 697, 853
BsaWI	WCCGGW	2 cut(s)	540, 799
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 470, 471, 500
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
Bse118I	RCCGGY	1 cut(s)	540
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	675
BseDI	CCNNGG	5 cut(s)	18, 232, 372, 697, 853
BseGI	GGATG	3 cut(s)	634, 708, 846
BseLI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	257, 295
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	278, 749
BseSI	GKGCMC	1 cut(s)	752
BseXI	GCAGC	2 cut(s)	76, 98
Bsh1236I	CGCG	4 cut(s)	318, 746, 817, 855
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	237, 428, 485
BshNI	GGYRCC	3 cut(s)	608, 643, 810
BshTI	ACCGGT	1 cut(s)	540
BsiEI	CGRYCG	1 cut(s)	541
BsiSI	CCGG	3 cut(s)	374, 541, 800
BslFI	GGGAC	4 cut(s)	299, 355, 849, 871
BslI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
BsmAI	GTCTC	2 cut(s)	17, 753
BsmFI	GGGAC	4 cut(s)	299, 355, 849, 871
BsnI	GGCC	3 cut(s)	237, 428, 485
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp143I	GATC	2 cut(s)	335, 831
Bsp1720I	GCTNAGC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	3 cut(s)	237, 428, 485
BspCNI	CTCAG	2 cut(s)	256, 294
BspFNI	CGCG	4 cut(s)	318, 746, 817, 855
BspLI	GGNNCC	4 cut(s)	287, 610, 645, 812
BspMAI	CTGCAG	2 cut(s)	88, 839
BspMI	ACCTGC	1 cut(s)	91
BspT107I	GGYRCC	3 cut(s)	608, 643, 810
BspTNI	GGTCTC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	675
BsrFI	RCCGGY	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	540
BssECI	CCNNGG	5 cut(s)	18, 232, 372, 697, 853
BssMI	GATC	2 cut(s)	335, 831
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	18, 697
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	3 cut(s)	32, 767, 872
Bst6I	CTCTTC	1 cut(s)	645
BstC8I	GCNNGC	4 cut(s)	11, 15, 106, 748
BstDEI	CTNAG	2 cut(s)	243, 281
BstDSI	CCRYGG	2 cut(s)	18, 853
BstEII	GGTNACC	1 cut(s)	872
BstF5I	GGATG	3 cut(s)	634, 708, 846
BstFNI	CGCG	4 cut(s)	318, 746, 817, 855
BstHHI	GCGC	4 cut(s)	522, 668, 746, 819
BstKTI	GATC	2 cut(s)	338, 834
BstMAI	GTCTC	2 cut(s)	17, 753
BstMBI	GATC	2 cut(s)	335, 831
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 175, 504, 747
BstPAI	GACNNNNGTC	1 cut(s)	765
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	84, 835
BstSLI	GKGCMC	1 cut(s)	752
BstUI	CGCG	4 cut(s)	318, 746, 817, 855
BstV1I	GCAGC	2 cut(s)	76, 98
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	237, 428, 485
BtgI	CCRYGG	2 cut(s)	18, 853
BtsCI	GGATG	3 cut(s)	634, 708, 846
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	443, 548
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	4 cut(s)	11, 15, 106, 748
CfoI	GCGC	4 cut(s)	522, 668, 746, 819
Cfr10I	RCCGGY	1 cut(s)	540
Cfr13I	GGNCC	3 cut(s)	286, 632, 844
Cfr42I	CCGCGG	1 cut(s)	856
CseI	GACGC	2 cut(s)	496, 785
Csp6I	GTAC	1 cut(s)	644
CspAI	ACCGGT	1 cut(s)	540
CviAII	CATG	5 cut(s)	19, 112, 223, 424, 514
CviQI	GTAC	1 cut(s)	644
DdeI	CTNAG	2 cut(s)	243, 281
DpnI	GATC	2 cut(s)	337, 833
DpnII	GATC	2 cut(s)	335, 831
EaeI	YGGCCR	2 cut(s)	235, 426
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	878
Eco130I	CCWWGG	2 cut(s)	18, 697
Eco147I	AGGCCT	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	3 cut(s)	286, 632, 844
Eco57I	CTGAAG	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	872
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	18, 697
ErhI	CCWWGG	2 cut(s)	18, 697
FaeI	CATG	5 cut(s)	22, 115, 226, 427, 517
FaiI	YATR	9 cut(s)	20, 113, 117, 224, 425, 515, 693, 756, 912
FaqI	GGGAC	4 cut(s)	299, 355, 849, 871
FatI	CATG	5 cut(s)	18, 111, 222, 423, 513
FauI	CCCGC	4 cut(s)	138, 822, 848, 860
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
FokI	GGATG	3 cut(s)	641, 715, 853
Fsp4HI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
FspBI	CTAG	2 cut(s)	254, 504
GlaI	GCGC	4 cut(s)	521, 667, 745, 818
GluI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	237, 428, 485
HapII	CCGG	3 cut(s)	374, 541, 800
HgaI	GACGC	2 cut(s)	496, 785
HhaI	GCGC	4 cut(s)	522, 668, 746, 819
Hin1II	CATG	5 cut(s)	22, 115, 226, 427, 517
Hin6I	GCGC	4 cut(s)	520, 666, 744, 817
HinP1I	GCGC	4 cut(s)	520, 666, 744, 817
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	68, 305
HpaII	CCGG	3 cut(s)	374, 541, 800
HphI	GGTGA	4 cut(s)	604, 814, 841, 866
Hpy166II	GTNNAC	3 cut(s)	141, 304, 595
Hpy188I	TCNGA	6 cut(s)	67, 97, 184, 335, 414, 490
Hpy188III	TCNNGA	3 cut(s)	254, 470, 576
Hpy8I	GTNNAC	3 cut(s)	141, 304, 595
Hpy99I	CGWCG	3 cut(s)	194, 209, 482
HpyAV	CCTTC	2 cut(s)	619, 679
HpyCH4III	ACNGT	3 cut(s)	32, 767, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 175, 504, 747
HpyF3I	CTNAG	2 cut(s)	243, 281
Hsp92II	CATG	5 cut(s)	22, 115, 226, 427, 517
HspAI	GCGC	4 cut(s)	520, 666, 744, 817
KpnI	GGTACC	1 cut(s)	647
KspI	CCGCGG	1 cut(s)	856
Kzo9I	GATC	2 cut(s)	335, 831
LmnI	GCTCC	6 cut(s)	113, 125, 265, 517, 578, 715
Lsp1109I	GCAGC	2 cut(s)	76, 98
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	254, 504
MaeIII	GTNAC	3 cut(s)	581, 872, 881
MalI	GATC	2 cut(s)	337, 833
MbiI	CCGCTC	1 cut(s)	741
MboI	GATC	2 cut(s)	335, 831
MboII	GAAGA	2 cut(s)	662, 721
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	1 cut(s)	752
MlyI	GAGTC	2 cut(s)	62, 299
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	419
MslI	CAYNNNNRTG	2 cut(s)	207, 422
MspA1I	CMGCKG	3 cut(s)	89, 855, 879
MspI	CCGG	3 cut(s)	374, 541, 800
MspR9I	CCNGG	1 cut(s)	374
MvnI	CGCG	4 cut(s)	318, 746, 817, 855
MwoI	GCNNNNNNNGC	4 cut(s)	10, 175, 504, 747
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	335, 831
NlaIII	CATG	5 cut(s)	22, 115, 226, 427, 517
NlaIV	GGNNCC	4 cut(s)	287, 610, 645, 812
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	872, 881
PceI	AGGCCT	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	2 cut(s)	486, 780
PdmI	GAANNNNTTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	605
PinAI	ACCGGT	1 cut(s)	540
PkrI	GCNGC	5 cut(s)	40, 88, 91, 317, 743
PleI	GAGTC	2 cut(s)	62, 299
PpsI	GAGTC	2 cut(s)	62, 299
PpuMI	RGGWCCY	1 cut(s)	286
PshAI	GACNNNNGTC	1 cut(s)	765
PsiI	TTATAA	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	872
PspN4I	GGNNCC	4 cut(s)	287, 610, 645, 812
PspPI	GGNCC	3 cut(s)	286, 632, 844
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	2 cut(s)	88, 839
PsuI	RGATCY	1 cut(s)	831
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	645
RsaNI	GTAC	1 cut(s)	644
RseI	CAYNNNNRTG	2 cut(s)	207, 422
SacII	CCGCGG	1 cut(s)	856
SatI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
Sau3AI	GATC	2 cut(s)	335, 831
Sau96I	GGNCC	3 cut(s)	286, 632, 844
SchI	GAGTC	2 cut(s)	62, 299
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	752
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	2 cut(s)	84, 835
Sfr303I	CCGCGG	1 cut(s)	856
SgrBI	CCGCGG	1 cut(s)	856
SinI	GGWCC	3 cut(s)	286, 632, 844
SmiMI	CAYNNNNRTG	2 cut(s)	207, 422
SseBI	AGGCCT	1 cut(s)	485
SspMI	CTAG	2 cut(s)	254, 504
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	18, 697
TaaI	ACNGT	3 cut(s)	32, 767, 872
TauI	GCSGC	3 cut(s)	41, 318, 744
TscAI	CASTG	2 cut(s)	450, 555
TseFI	GTSAC	2 cut(s)	872, 881
TseI	GCWGC	2 cut(s)	86, 89
Tsp45I	GTSAC	2 cut(s)	872, 881
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	2 cut(s)	450, 555
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	3 cut(s)	286, 632, 844
XbaI	TCTAGA	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	2 cut(s)	254, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.