Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8436737.1

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Forward (+)

28 .. 602

Gene Structure 575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8436737.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggccgatgagttgaagccactgggagtgggagtatttagtcctcgtgatggcgacgaggcctccgatatcagccccactagcgtcatcatggagcgcaaccgcttcaatgccgaccggttctcactgccgaaaagcatttcggttcgctccagaggttacaaaaaggtgaacccatcatttggtgccaaccaactgctgaaggatggtcctgcaagggtacccgaagaggggagtagtggcgcaatgcaagtgaaagtgaaggcttataaccaagggatgttgaagacggagctttgcaacaagtgggaggagagcggcgcgtgcccttatggagacaactgtcagttcgctcacggcgttagagaactgcgtccggtgatgaggcacccgcgctacaagacccagatctgcaggatggtcctcacccgcgggacttgcccctacggtcaccgctgtcacttccgccactccctcaacgaccaacatagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

164

Amino Acids

18.5

Weight (kDa)

9.48

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
Acc65I	GGTACC	1 cut(s)	220
AccB1I	GGYRCC	3 cut(s)	185, 220, 387
AccB7I	CCANNNNNTGG	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	318
AccII	CGCG	3 cut(s)	323, 394, 432
AciI	CCGC	7 cut(s)	103, 318, 392, 430, 432, 454, 466
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	4 cut(s)	50, 182, 230, 231
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	16, 109, 286
AluBI	AGCT	1 cut(s)	295
AluI	AGCT	1 cut(s)	295
Alw26I	GTCTC	1 cut(s)	330
AoxI	GGCC	2 cut(s)	3, 60
AsiGI	ACCGGT	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	220
AspLEI	GCGC	4 cut(s)	99, 245, 323, 396
AspS9I	GGNCC	2 cut(s)	209, 421
AsuHPI	GGTGA	4 cut(s)	181, 391, 418, 443
AvaII	GGWCC	2 cut(s)	209, 421
BaeGI	GKGCMC	1 cut(s)	329
BanI	GGYRCC	3 cut(s)	185, 220, 387
BauI	CACGAG	1 cut(s)	45
BbsI	GAAGAC	1 cut(s)	293
BccI	CCATC	4 cut(s)	44, 184, 200, 412
BceAI	ACGGC	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	1 cut(s)	81
BfmI	CTRYAG	1 cut(s)	412
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	1 cut(s)	319
BlsI	GCNGC	1 cut(s)	320
Bme18I	GGWCC	2 cut(s)	209, 421
BmgT120I	GGNCC	2 cut(s)	209, 421
BmiI	GGNNCC	3 cut(s)	187, 222, 389
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BoxI	GACNNNNGTC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	274, 430
BsaWI	WCCGGW	2 cut(s)	117, 376
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 47, 48, 77
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 182, 230, 231
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	27
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	274, 430
BseGI	GGATG	3 cut(s)	211, 285, 423
BseLI	CCNNNNNNNGG	4 cut(s)	50, 182, 230, 231
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	27
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	329
Bsh1236I	CGCG	3 cut(s)	323, 394, 432
Bsh1285I	CGRYCG	1 cut(s)	118
BshFI	GGCC	2 cut(s)	5, 62
BshNI	GGYRCC	3 cut(s)	185, 220, 387
BshTI	ACCGGT	1 cut(s)	117
BsiEI	CGRYCG	1 cut(s)	118
BsiSI	CCGG	2 cut(s)	118, 377
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	4 cut(s)	50, 182, 230, 231
BsmAI	GTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	5, 62
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	1 cut(s)	408
BspACI	CCGC	7 cut(s)	103, 318, 392, 430, 432, 454, 466
BspANI	GGCC	2 cut(s)	5, 62
BspFNI	CGCG	3 cut(s)	323, 394, 432
BspLI	GGNNCC	3 cut(s)	187, 222, 389
BspMAI	CTGCAG	1 cut(s)	416
BspT107I	GGYRCC	3 cut(s)	185, 220, 387
BsrBI	CCGCTC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	274, 430
BssMI	GATC	1 cut(s)	408
BssSI	CACGAG	1 cut(s)	45
BssT1I	CCWWGG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	344, 449
Bst6I	CTCTTC	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	325
BstDSI	CCRYGG	1 cut(s)	430
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	211, 285, 423
BstFNI	CGCG	3 cut(s)	323, 394, 432
BstHHI	GCGC	4 cut(s)	99, 245, 323, 396
BstKTI	GATC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	408
BstMCI	CGRYCG	1 cut(s)	118
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 324, 438
BstPAI	GACNNNNGTC	1 cut(s)	342
BstPI	GGTNACC	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	329
BstUI	CGCG	3 cut(s)	323, 394, 432
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	5, 62
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	3 cut(s)	211, 285, 423
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	20, 125
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	4 cut(s)	99, 245, 323, 396
Cfr10I	RCCGGY	1 cut(s)	117
Cfr13I	GGNCC	2 cut(s)	209, 421
Cfr42I	CCGCGG	1 cut(s)	433
CseI	GACGC	2 cut(s)	73, 362
Csp6I	GTAC	1 cut(s)	221
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	6 cut(s)	5, 19, 62, 75, 266, 295
CviKI_1	RGCY	6 cut(s)	5, 19, 62, 75, 266, 295
CviQI	GTAC	1 cut(s)	221
DpnI	GATC	1 cut(s)	410
DpnII	GATC	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	274
Eco147I	AGGCCT	1 cut(s)	62
Eco32I	GATATC	1 cut(s)	70
Eco47I	GGWCC	2 cut(s)	209, 421
Eco57I	CTGAAG	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	449
EcoO65I	GGTNACC	1 cut(s)	449
EcoRV	GATATC	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	1 cut(s)	94
FaiI	YATR	4 cut(s)	92, 270, 333, 489
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	1 cut(s)	90
FauI	CCCGC	3 cut(s)	399, 425, 437
Fnu4HI	GCNGC	1 cut(s)	319
FokI	GGATG	3 cut(s)	218, 292, 430
Fsp4HI	GCNGC	1 cut(s)	319
FspBI	CTAG	1 cut(s)	81
GlaI	GCGC	4 cut(s)	98, 244, 322, 395
GluI	GCNGC	1 cut(s)	319
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	5, 62
HapII	CCGG	2 cut(s)	118, 377
HgaI	GACGC	2 cut(s)	73, 362
HhaI	GCGC	4 cut(s)	99, 245, 323, 396
Hin1II	CATG	1 cut(s)	94
Hin6I	GCGC	4 cut(s)	97, 243, 321, 394
HinP1I	GCGC	4 cut(s)	97, 243, 321, 394
HpaII	CCGG	2 cut(s)	118, 377
HphI	GGTGA	4 cut(s)	181, 391, 418, 443
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	47, 153
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	2 cut(s)	196, 256
HpyCH4III	ACNGT	2 cut(s)	344, 449
HpyCH4V	TGCA	4 cut(s)	215, 250, 300, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 324, 438
Hsp92II	CATG	1 cut(s)	94
HspAI	GCGC	4 cut(s)	97, 243, 321, 394
KpnI	GGTACC	1 cut(s)	224
KspI	CCGCGG	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	408
LmnI	GCTCC	3 cut(s)	94, 155, 292
LpnPI	CCDG	7 cut(s)	8, 131, 166, 225, 390, 400, 419
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	3 cut(s)	158, 449, 458
MalI	GATC	1 cut(s)	410
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	1 cut(s)	408
MboII	GAAGA	2 cut(s)	239, 298
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	329
MnlI	CCTC	9 cut(s)	52, 54, 73, 149, 223, 304, 378, 434, 485
MspA1I	CMGCKG	2 cut(s)	432, 456
MspI	CCGG	2 cut(s)	118, 377
MvnI	CGCG	3 cut(s)	323, 394, 432
MwoI	GCNNNNNNNGC	3 cut(s)	81, 324, 438
NdeII	GATC	1 cut(s)	408
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	3 cut(s)	187, 222, 389
NmuCI	GTSAC	2 cut(s)	449, 458
PceI	AGGCCT	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 357
PflMI	CCANNNNNTGG	1 cut(s)	182
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	320
PshAI	GACNNNNGTC	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	270
PspEI	GGTNACC	1 cut(s)	449
PspN4I	GGNNCC	3 cut(s)	187, 222, 389
PspPI	GGNCC	2 cut(s)	209, 421
PstI	CTGCAG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	408
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
SacII	CCGCGG	1 cut(s)	433
SatI	GCNGC	1 cut(s)	319
Sau3AI	GATC	1 cut(s)	408
Sau96I	GGNCC	2 cut(s)	209, 421
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	3 cut(s)	160, 171, 297
SfcI	CTRYAG	1 cut(s)	412
Sfr303I	CCGCGG	1 cut(s)	433
SgrBI	CCGCGG	1 cut(s)	433
SinI	GGWCC	2 cut(s)	209, 421
SseBI	AGGCCT	1 cut(s)	62
SsiI	CCGC	7 cut(s)	103, 318, 392, 430, 432, 454, 466
SspMI	CTAG	1 cut(s)	81
StuI	AGGCCT	1 cut(s)	62
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	344, 449
TauI	GCSGC	1 cut(s)	321
TscAI	CASTG	2 cut(s)	27, 132
TseFI	GTSAC	2 cut(s)	449, 458
Tsp45I	GTSAC	2 cut(s)	449, 458
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	27, 132
Van91I	CCANNNNNTGG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	209, 421
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.