Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Forward (+)

15086300 .. 15087725

Gene Structure 1426 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11300.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCCTTCTAACTGTTTTGATGGTGCAACACTTGTCAAAGCAAAACAAGTAAGCAAGCAAGCTAAAAAGCAAAGCAAAACAAAGCCATATATGGAGACCAACAGTACTAGCACCCCTTCCTCAAACTCCACTTCATCAGATTTCGCCAGCTCCATGTATAGCTGCTCCATTTTCCCGCCAAAGTTCACACTCCCTAACTCCCTTTCTCTAACGCCCTCCACGCTCTCCGATGAAGACGGAGACCACCGCCATGAGGACTGCAACACCATGCACCGCCTCGGCCAAGCTCAGCTCGTTCTCGAGTGCGAGGAGCTTCGTGATCACCTCCGGAAGCTTAACAACGAGGCAGACTCCCTTCGCCGCGAGAACGCTGTGCTTCGATCTGCAAACACTGGTCTTGTCAAGCTTCTCAAGAACTTGTTCAATGCGTCGAGTTATGTGAACCACCCTTTCATGGCCGATGAGTTGAAGCCACTCGGATTCGGCGTATTTAGCCCTCGTGATGGCGACGAGGCCTCCGATATTAGCCCCACCAGCGTCATCATGGAGCAAAAGCGGTTCAACGCCGACCGATTCTCACTCCCGAAAAGCATTTCGGTTCTCTCCTCCTCCTCCGGTTACAATAACCAACCACCGCTGCATGAGGGTCTTGCAAGGGTGGCGGATCAAGAGGGGGCTAGTGGCGCAATGCAAGTGAAGAAAGCGAAGGCATGGTACAACCAGGGGATGGTGAAGACGGAGCTCTGCAACAAGTGGCAGGAGAGCGGCGCGTGCCCTTATGGAGACAACTGTCAGTTTGCTCACGGCGTTAGAGAGCTGCGTCCGGTGATGCGGCACCCGCGTTACAAGACTCAGATCTGCAGGATGGTCCTCACCGGCGGCACCTGTCCCTACGGTCACCGCTGCCACTTCCGCCACTCCCTCAACGACCACCAACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

315

Amino Acids

35.05

Weight (kDa)

8.85

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	245 - 269	1.9e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	249 - 268	1.1e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	834, 881
AccB7I	CCANNNNNTGG	1 cut(s)	727
AccBSI	CCGCTC	1 cut(s)	765
AccII	CGCG	3 cut(s)	363, 770, 841
AccIII	TCCGGA	1 cut(s)	327
AclWI	GGATC	1 cut(s)	672
AcoI	YGGCCR	2 cut(s)	280, 456
AfaI	GTAC	2 cut(s)	106, 716
AfiI	CCNNNNNNNGG	4 cut(s)	253, 454, 503, 727
AgsI	TTSAA	3 cut(s)	424, 469, 562
AjnI	CCWGG	1 cut(s)	720
Alw21I	GWGCWC	1 cut(s)	744
Alw26I	GTCTC	3 cut(s)	89, 234, 777
AlwI	GGATC	1 cut(s)	672
Ama87I	CYCGRG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	327
AoxI	GGCC	3 cut(s)	280, 456, 513
ApeKI	GCWGC	4 cut(s)	162, 637, 817, 903
Asp700I	GAANNNNTTC	1 cut(s)	419
AspLEI	GCGC	2 cut(s)	686, 770
AspS9I	GGNCC	1 cut(s)	868
AsuHPI	GGTGA	5 cut(s)	314, 742, 838, 865, 890
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	868
BaeGI	GKGCMC	1 cut(s)	776
BanI	GGYRCC	2 cut(s)	834, 881
BanII	GRGCYC	1 cut(s)	744
BarI	GAAGNNNNNNTAC	2 cut(s)	698, 730
BauI	CACGAG	1 cut(s)	498
BbsI	GAAGAC	2 cut(s)	240, 740
Bbv12I	GWGCWC	1 cut(s)	744
BbvI	GCAGC	4 cut(s)	149, 624, 804, 890
BccI	CCATC	4 cut(s)	14, 497, 721, 859
BceAI	ACGGC	1 cut(s)	820
BciT130I	CCWGG	1 cut(s)	722
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	3 cut(s)	89, 234, 777
BfaI	CTAG	2 cut(s)	108, 678
BfmI	CTRYAG	1 cut(s)	859
BglII	AGATCT	1 cut(s)	855
BisI	GCNGC	8 cut(s)	163, 361, 638, 766, 818, 833, 880, 904
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	8 cut(s)	164, 362, 639, 767, 819, 834, 881, 905
BmcAI	AGTACT	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	1 cut(s)	868
BmeT110I	CYCGRG	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	868
BmiI	GGNNCC	2 cut(s)	836, 883
BmrFI	CCNGG	1 cut(s)	722
BmsI	GCATC	1 cut(s)	819
BoxI	GACNNNNGTC	1 cut(s)	789
BpiI	GAAGAC	2 cut(s)	240, 740
BplI	GAGNNNNNCTC	2 cut(s)	335, 367
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	395
BsaI	GGTCTC	2 cut(s)	89, 234
BsaJI	CCNNGG	2 cut(s)	277, 721
BsaWI	WCCGGW	3 cut(s)	327, 614, 823
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	4 cut(s)	253, 454, 503, 727
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	722
BseDI	CCNNGG	2 cut(s)	277, 721
BseGI	GGATG	2 cut(s)	732, 870
BseLI	CCNNNNNNNGG	4 cut(s)	253, 454, 503, 727
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	2 cut(s)	302, 866
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	4 cut(s)	323, 595, 598, 601
BseSI	GKGCMC	1 cut(s)	776
BseXI	GCAGC	4 cut(s)	149, 624, 804, 890
Bsh1236I	CGCG	3 cut(s)	363, 770, 841
Bsh1285I	CGRYCG	1 cut(s)	571
BshFI	GGCC	3 cut(s)	282, 458, 515
BshNI	GGYRCC	2 cut(s)	834, 881
BsiEI	CGRYCG	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	744
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	4 cut(s)	328, 615, 824, 876
BslFI	GGGAC	1 cut(s)	873
BslI	CCNNNNNNNGG	4 cut(s)	253, 454, 503, 727
BsmAI	GTCTC	3 cut(s)	89, 234, 777
BsmFI	GGGAC	1 cut(s)	873
BsnI	GGCC	3 cut(s)	282, 458, 515
Bso31I	GGTCTC	2 cut(s)	89, 234
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	744, 776
Bsp13I	TCCGGA	1 cut(s)	327
Bsp143I	GATC	4 cut(s)	319, 380, 664, 855
Bsp1720I	GCTNAGC	1 cut(s)	288
BspANI	GGCC	3 cut(s)	282, 458, 515
BspCNI	CTCAG	2 cut(s)	301, 865
BspEI	TCCGGA	1 cut(s)	327
BspFNI	CGCG	3 cut(s)	363, 770, 841
BspLI	GGNNCC	2 cut(s)	836, 883
BspMAI	CTGCAG	1 cut(s)	863
BspPI	GGATC	1 cut(s)	672
BspT107I	GGYRCC	2 cut(s)	834, 881
BspTNI	GGTCTC	2 cut(s)	89, 234
BsrBI	CCGCTC	1 cut(s)	765
BsrDI	GCAATG	1 cut(s)	693
BsrFI	RCCGGY	1 cut(s)	875
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	2 cut(s)	277, 721
BssMI	GATC	4 cut(s)	319, 380, 664, 855
BssSI	CACGAG	1 cut(s)	498
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	4 cut(s)	14, 104, 791, 896
BstC8I	GCNNGC	4 cut(s)	56, 60, 148, 772
BstDEI	CTNAG	2 cut(s)	288, 852
BstEII	GGTNACC	1 cut(s)	896
BstF5I	GGATG	2 cut(s)	732, 870
BstFNI	CGCG	3 cut(s)	363, 770, 841
BstHHI	GCGC	2 cut(s)	686, 770
BstKTI	GATC	4 cut(s)	322, 383, 667, 858
BstMAI	GTCTC	3 cut(s)	89, 234, 777
BstMBI	GATC	4 cut(s)	319, 380, 664, 855
BstMCI	CGRYCG	1 cut(s)	571
BstMWI	GCNNNNNNNGC	8 cut(s)	220, 492, 534, 659, 683, 771, 838, 912
BstNI	CCWGG	1 cut(s)	722
BstPAI	GACNNNNGTC	1 cut(s)	789
BstPI	GGTNACC	1 cut(s)	896
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	1 cut(s)	859
BstSLI	GKGCMC	1 cut(s)	776
BstUI	CGCG	3 cut(s)	363, 770, 841
BstV1I	GCAGC	4 cut(s)	149, 624, 804, 890
BstV2I	GAAGAC	2 cut(s)	240, 740
BstX2I	RGATCY	1 cut(s)	855
BstYI	RGATCY	1 cut(s)	855
BsuRI	GGCC	3 cut(s)	282, 458, 515
BtsCI	GGATG	2 cut(s)	732, 870
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	4 cut(s)	56, 60, 148, 772
CfoI	GCGC	2 cut(s)	686, 770
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	1 cut(s)	868
CseI	GACGC	3 cut(s)	417, 526, 809
Csp6I	GTAC	2 cut(s)	105, 715
CviAII	CATG	7 cut(s)	154, 251, 268, 454, 544, 641, 711
CviQI	GTAC	2 cut(s)	105, 715
DdeI	CTNAG	2 cut(s)	288, 852
DpnI	GATC	4 cut(s)	321, 382, 666, 857
DpnII	GATC	4 cut(s)	319, 380, 664, 855
EaeI	YGGCCR	2 cut(s)	280, 456
EciI	GGCGGA	2 cut(s)	677, 902
Ecl136II	GAGCTC	1 cut(s)	742
Eco147I	AGGCCT	1 cut(s)	515
Eco24I	GRGCYC	1 cut(s)	744
Eco31I	GGTCTC	2 cut(s)	89, 234
Eco47I	GGWCC	1 cut(s)	868
Eco53kI	GAGCTC	1 cut(s)	742
Eco88I	CYCGRG	1 cut(s)	299
Eco91I	GGTNACC	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	742
EcoO65I	GGTNACC	1 cut(s)	896
EcoRII	CCWGG	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	744
FaeI	CATG	7 cut(s)	157, 254, 271, 457, 547, 644, 714
FaqI	GGGAC	1 cut(s)	873
FatI	CATG	7 cut(s)	153, 250, 267, 453, 543, 640, 710
FauI	CCCGC	2 cut(s)	183, 846
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	8 cut(s)	163, 361, 638, 766, 818, 833, 880, 904
FokI	GGATG	2 cut(s)	739, 877
FriOI	GRGCYC	1 cut(s)	744
Fsp4HI	GCNGC	8 cut(s)	163, 361, 638, 766, 818, 833, 880, 904
FspBI	CTAG	2 cut(s)	108, 678
GlaI	GCGC	2 cut(s)	685, 769
GluI	GCNGC	8 cut(s)	163, 361, 638, 766, 818, 833, 880, 904
HaeIII	GGCC	3 cut(s)	282, 458, 515
HapII	CCGG	4 cut(s)	328, 615, 824, 876
HgaI	GACGC	3 cut(s)	417, 526, 809
HhaI	GCGC	2 cut(s)	686, 770
Hin1II	CATG	7 cut(s)	157, 254, 271, 457, 547, 644, 714
Hin6I	GCGC	2 cut(s)	684, 768
HinP1I	GCGC	2 cut(s)	684, 768
HindIII	AAGCTT	2 cut(s)	332, 404
HinfI	GANTC	4 cut(s)	350, 480, 573, 850
HpaII	CCGG	4 cut(s)	328, 615, 824, 876
HphI	GGTGA	5 cut(s)	314, 742, 838, 865, 890
Hpy166II	GTNNAC	2 cut(s)	186, 442
Hpy188I	TCNGA	5 cut(s)	139, 229, 479, 520, 855
Hpy188III	TCNNGA	7 cut(s)	299, 317, 328, 412, 500, 583, 668
Hpy8I	GTNNAC	2 cut(s)	186, 442
Hpy99I	CGWCG	2 cut(s)	433, 512
HpyAV	CCTTC	4 cut(s)	15, 126, 365, 700
HpyCH4III	ACNGT	4 cut(s)	14, 104, 791, 896
HpyCH4V	TGCA	9 cut(s)	26, 261, 271, 386, 640, 653, 691, 747, 861
HpyF10VI	GCNNNNNNNGC	8 cut(s)	220, 492, 534, 659, 683, 771, 838, 912
HpyF3I	CTNAG	2 cut(s)	288, 852
Hsp92II	CATG	7 cut(s)	157, 254, 271, 457, 547, 644, 714
HspAI	GCGC	2 cut(s)	684, 768
Kpn2I	TCCGGA	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	319, 380, 664, 855
LmnI	GCTCC	5 cut(s)	155, 170, 310, 547, 739
Lsp1109I	GCAGC	4 cut(s)	149, 624, 804, 890
LweI	GCATC	1 cut(s)	819
MaeI	CTAG	2 cut(s)	108, 678
MaeIII	GTNAC	3 cut(s)	617, 842, 896
MalI	GATC	4 cut(s)	321, 382, 666, 857
MbiI	CCGCTC	1 cut(s)	765
MboI	GATC	4 cut(s)	319, 380, 664, 855
MboII	GAAGA	3 cut(s)	245, 709, 745
MflI	RGATCY	1 cut(s)	855
MhlI	GDGCHC	2 cut(s)	744, 776
MlyI	GAGTC	2 cut(s)	344, 844
MroI	TCCGGA	1 cut(s)	327
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	1 cut(s)	336
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	2 cut(s)	637, 903
MspI	CCGG	4 cut(s)	328, 615, 824, 876
MspR9I	CCNGG	1 cut(s)	722
MvaI	CCWGG	1 cut(s)	722
MvnI	CGCG	3 cut(s)	363, 770, 841
MwoI	GCNNNNNNNGC	8 cut(s)	220, 492, 534, 659, 683, 771, 838, 912
NdeII	GATC	4 cut(s)	319, 380, 664, 855
NlaIII	CATG	7 cut(s)	157, 254, 271, 457, 547, 644, 714
NlaIV	GGNNCC	2 cut(s)	836, 883
NmeAIII	GCCGAG	1 cut(s)	258
NmuCI	GTSAC	1 cut(s)	896
PaeR7I	CTCGAG	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	515
PcsI	WCGNNNNNNNCGW	2 cut(s)	483, 516
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	480, 573
PflMI	CCANNNNNTGG	1 cut(s)	727
PkrI	GCNGC	8 cut(s)	164, 362, 639, 767, 819, 834, 881, 905
PleI	GAGTC	2 cut(s)	344, 844
PpsI	GAGTC	2 cut(s)	344, 844
PshAI	GACNNNNGTC	1 cut(s)	789
Psp124BI	GAGCTC	1 cut(s)	744
Psp6I	CCWGG	1 cut(s)	720
PspEI	GGTNACC	1 cut(s)	896
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	2 cut(s)	836, 883
PspPI	GGNCC	1 cut(s)	868
PstI	CTGCAG	1 cut(s)	863
PsuI	RGATCY	1 cut(s)	855
RsaI	GTAC	2 cut(s)	106, 716
RsaNI	GTAC	2 cut(s)	105, 715
RseI	CAYNNNNRTG	1 cut(s)	249
SacI	GAGCTC	1 cut(s)	744
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	8 cut(s)	163, 361, 638, 766, 818, 833, 880, 904
Sau3AI	GATC	4 cut(s)	319, 380, 664, 855
Sau96I	GGNCC	1 cut(s)	868
ScaI	AGTACT	1 cut(s)	106
SchI	GAGTC	2 cut(s)	344, 844
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	2 cut(s)	744, 776
SfaNI	GCATC	1 cut(s)	819
SfcI	CTRYAG	1 cut(s)	859
Sfr274I	CTCGAG	1 cut(s)	299
SgrAI	CRCCGGYG	1 cut(s)	875
SinI	GGWCC	1 cut(s)	868
SlaI	CTCGAG	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	2 cut(s)	299, 410
SmoI	CTYRAG	2 cut(s)	299, 410
SseBI	AGGCCT	1 cut(s)	515
SspMI	CTAG	2 cut(s)	108, 678
SstI	GAGCTC	1 cut(s)	744
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	720
TaaI	ACNGT	4 cut(s)	14, 104, 791, 896
TaqI	TCGA	3 cut(s)	300, 379, 431
TaqII	GACCGA	1 cut(s)	585
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	4 cut(s)	363, 768, 835, 882
TfiI	GAWTC	2 cut(s)	480, 573
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	896
TseI	GCWGC	4 cut(s)	162, 637, 817, 903
Tsp45I	GTSAC	1 cut(s)	896
TspDTI	ATGAA	3 cut(s)	123, 246, 442
TspGWI	ACGGA	2 cut(s)	252, 752
TspRI	CASTG	1 cut(s)	397
Van91I	CCANNNNNTGG	1 cut(s)	727
VpaK11BI	GGWCC	1 cut(s)	868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	541
XhoI	CTCGAG	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	2 cut(s)	108, 678
ZrmI	AGTACT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.