Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Reverse (-)

35519832 .. 35520827

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGCAAAGCAAGCAAGCCATGGAGACCAACAGTAGTGCCGCCTCCCCAAACTCATCAGCGTTATCCGACTCTACTAACCAACCTGCTGCATCAGATTTTGCCAGCTCCATGTACAGCTCCATTTTCCCGCAAAAGTTCACTCTCCCAAGTTCCCTTTCTCTAACGCCCTCAACGCTCTCCGATGACGATGGCGACCACCACCACCACGACTGCAACACCATGCACCGCCTCGGCCAAGCGCAGCTCGTTCTAGAGTGCGAGGAGCTTCGCAACCACCTCAGGGACCTCAACAACGAGGTAGACTCCCTTCGCCGCGAGAACGCTGTCCTCCGATCTGCAAACACCGATTTGGTCAAGCTTCTGTCGTCCCCGGCTGCTCTCCACAACTTCCTCAATGCGTCCACCTATCTGAACACTTTCATGGCCGATGAGTTGAAGCCACTCGGAGTGGGAGTATTTAGTCCTCGTGATGGCGACGAGGCCTCCGATATCAGCCCCACTAGCGTCATCATGGAGCGCAACCGCTTCAATGCCGACCGGTTCTCACTCCCGAAAAGCATTTCGGTTCGCTCCAGCGGTTACAAAAAGGTGAACCCATCATTTGGTGCCAACCAACTGCTGCAGGATGCTCCTGCAAGGGTACCCGAAGAGGGGAGTAGTGGCGCAATGCAAGTAAAAGTGAAGGCTTATAACCAAGGGATGTTGAAGACGGAGCTTTGCAACAAGTGGGAGGAGAGCGGCGCGTGCCCTTATGGAGACAACTGTCAGTTCGCTCACGGTGTTAGAGAACTGCGCCCGGTGATGAGGCACCCGCGCTACAAGACCCAGATCTGCAGGATGGTCCTTACCCGCGGGACTTGTCCCTACGGTCACCGCTGTCACTTCCGCCACTCCCTCAACGACCAACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

305

Amino Acids

33.77

Weight (kDa)

7.2

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	236 - 260	3.8e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	240 - 259	1.7e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
Acc36I	ACCTGC	1 cut(s)	91
Acc65I	GGTACC	1 cut(s)	640
AccB1I	GGYRCC	3 cut(s)	605, 640, 807
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	738
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	4 cut(s)	315, 743, 814, 852
AcoI	YGGCCR	2 cut(s)	232, 423
AfaI	GTAC	2 cut(s)	113, 642
AfiI	CCNNNNNNNGG	5 cut(s)	280, 470, 602, 650, 651
AgeI	ACCGGT	1 cut(s)	537
AgsI	TTSAA	3 cut(s)	436, 529, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	139, 171
AluBI	AGCT	6 cut(s)	105, 117, 244, 265, 358, 715
AluI	AGCT	6 cut(s)	105, 117, 244, 265, 358, 715
Alw26I	GTCTC	2 cut(s)	17, 750
AoxI	GGCC	3 cut(s)	232, 423, 480
ApeKI	GCWGC	4 cut(s)	86, 241, 374, 619
AsiGI	ACCGGT	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	416
Asp718I	GGTACC	1 cut(s)	640
AspLEI	GCGC	6 cut(s)	241, 519, 665, 743, 795, 816
AspS9I	GGNCC	2 cut(s)	283, 841
AsuC2I	CCSGG	2 cut(s)	371, 797
AsuHPI	GGTGA	3 cut(s)	601, 811, 863
AvaII	GGWCC	2 cut(s)	283, 841
AxyI	CCTNAGG	1 cut(s)	278
BaeGI	GKGCMC	1 cut(s)	749
BanI	GGYRCC	3 cut(s)	605, 640, 807
BarI	GAAGNNNNNNTAC	2 cut(s)	291, 323
BauI	CACGAG	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	713
BbvI	GCAGC	4 cut(s)	73, 253, 361, 606
BccI	CCATC	4 cut(s)	182, 464, 604, 832
BcnI	CCSGG	2 cut(s)	371, 797
BcoDI	GTCTC	2 cut(s)	17, 750
BfaI	CTAG	2 cut(s)	251, 501
BfmI	CTRYAG	2 cut(s)	620, 832
BfuAI	ACCTGC	1 cut(s)	91
BglII	AGATCT	1 cut(s)	828
BisI	GCNGC	7 cut(s)	39, 87, 242, 313, 375, 620, 739
BlsI	GCNGC	7 cut(s)	40, 88, 243, 314, 376, 621, 740
Bme1390I	CCNGG	2 cut(s)	371, 797
Bme18I	GGWCC	2 cut(s)	283, 841
BmgT120I	GGNCC	2 cut(s)	283, 841
BmiI	GGNNCC	4 cut(s)	284, 607, 642, 809
BmrFI	CCNGG	2 cut(s)	371, 797
BmsI	GCATC	2 cut(s)	98, 616
BoxI	GACNNNNGTC	1 cut(s)	762
BpiI	GAAGAC	1 cut(s)	713
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	1 cut(s)	556
BpuMI	CCSGG	2 cut(s)	371, 797
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	5 cut(s)	18, 229, 369, 694, 850
BsaWI	WCCGGW	1 cut(s)	537
BsaXI	ACNNNNNCTCC	4 cut(s)	438, 467, 468, 497
Bsc4I	CCNNNNNNNGG	5 cut(s)	280, 470, 602, 650, 651
Bse118I	RCCGGY	1 cut(s)	537
Bse21I	CCTNAGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	672
BseDI	CCNNGG	5 cut(s)	18, 229, 369, 694, 850
BseGI	GGATG	3 cut(s)	631, 705, 843
BseLI	CCNNNNNNNGG	5 cut(s)	280, 470, 602, 650, 651
BseMI	GCAATG	1 cut(s)	672
BseMII	CTCAG	1 cut(s)	292
BseRI	GAGGAG	2 cut(s)	275, 746
BseSI	GKGCMC	1 cut(s)	749
BseXI	GCAGC	4 cut(s)	73, 253, 361, 606
Bsh1236I	CGCG	4 cut(s)	315, 743, 814, 852
Bsh1285I	CGRYCG	1 cut(s)	538
BshFI	GGCC	3 cut(s)	234, 425, 482
BshNI	GGYRCC	3 cut(s)	605, 640, 807
BshTI	ACCGGT	1 cut(s)	537
BsiEI	CGRYCG	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	371, 538, 797
BslFI	GGGAC	4 cut(s)	296, 352, 846, 868
BslI	CCNNNNNNNGG	5 cut(s)	280, 470, 602, 650, 651
BsmAI	GTCTC	2 cut(s)	17, 750
BsmFI	GGGAC	4 cut(s)	296, 352, 846, 868
BsnI	GGCC	3 cut(s)	234, 425, 482
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	749
Bsp1407I	TGTACA	1 cut(s)	111
Bsp143I	GATC	2 cut(s)	332, 828
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	3 cut(s)	234, 425, 482
BspCNI	CTCAG	1 cut(s)	291
BspFNI	CGCG	4 cut(s)	315, 743, 814, 852
BspLI	GGNNCC	4 cut(s)	284, 607, 642, 809
BspMAI	CTGCAG	2 cut(s)	624, 836
BspMI	ACCTGC	1 cut(s)	91
BspT107I	GGYRCC	3 cut(s)	605, 640, 807
BspTNI	GGTCTC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	738
BsrDI	GCAATG	1 cut(s)	672
BsrFI	RCCGGY	1 cut(s)	537
BsrGI	TGTACA	1 cut(s)	111
BssAI	RCCGGY	1 cut(s)	537
BssECI	CCNNGG	5 cut(s)	18, 229, 369, 694, 850
BssMI	GATC	2 cut(s)	332, 828
BssSI	CACGAG	1 cut(s)	465
BssT1I	CCWWGG	2 cut(s)	18, 694
Bst2BI	CACGAG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	32, 764, 779, 869
Bst6I	CTCTTC	1 cut(s)	642
BstAUI	TGTACA	1 cut(s)	111
BstC8I	GCNNGC	4 cut(s)	11, 15, 103, 745
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	2 cut(s)	18, 850
BstEII	GGTNACC	1 cut(s)	869
BstF5I	GGATG	3 cut(s)	631, 705, 843
BstFNI	CGCG	4 cut(s)	315, 743, 814, 852
BstHHI	GCGC	6 cut(s)	241, 519, 665, 743, 795, 816
BstKTI	GATC	2 cut(s)	335, 831
BstMAI	GTCTC	2 cut(s)	17, 750
BstMBI	GATC	2 cut(s)	332, 828
BstMCI	CGRYCG	1 cut(s)	538
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 172, 501, 744
BstPAI	GACNNNNGTC	1 cut(s)	762
BstPI	GGTNACC	1 cut(s)	869
BstSCI	CCNGG	2 cut(s)	369, 795
BstSFI	CTRYAG	2 cut(s)	620, 832
BstSLI	GKGCMC	1 cut(s)	749
BstUI	CGCG	4 cut(s)	315, 743, 814, 852
BstV1I	GCAGC	4 cut(s)	73, 253, 361, 606
BstV2I	GAAGAC	1 cut(s)	713
BstX2I	RGATCY	1 cut(s)	828
BstYI	RGATCY	1 cut(s)	828
Bsu36I	CCTNAGG	1 cut(s)	278
BsuRI	GGCC	3 cut(s)	234, 425, 482
BtgI	CCRYGG	2 cut(s)	18, 850
BtsCI	GGATG	3 cut(s)	631, 705, 843
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	4 cut(s)	11, 15, 103, 745
CfoI	GCGC	6 cut(s)	241, 519, 665, 743, 795, 816
Cfr10I	RCCGGY	1 cut(s)	537
Cfr13I	GGNCC	2 cut(s)	283, 841
Cfr42I	CCGCGG	1 cut(s)	853
CseI	GACGC	2 cut(s)	387, 493
Csp6I	GTAC	2 cut(s)	112, 641
CspAI	ACCGGT	1 cut(s)	537
CviAII	CATG	5 cut(s)	19, 109, 220, 421, 511
CviQI	GTAC	2 cut(s)	112, 641
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	2 cut(s)	334, 830
DpnII	GATC	2 cut(s)	332, 828
EaeI	YGGCCR	2 cut(s)	232, 423
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	875
Eco130I	CCWWGG	2 cut(s)	18, 694
Eco147I	AGGCCT	1 cut(s)	482
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	283, 841
Eco81I	CCTNAGG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	869
EcoO109I	RGGNCCY	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	869
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	2 cut(s)	18, 694
ErhI	CCWWGG	2 cut(s)	18, 694
FaeI	CATG	5 cut(s)	22, 112, 223, 424, 514
FaiI	YATR	8 cut(s)	20, 110, 221, 422, 512, 690, 753, 909
FaqI	GGGAC	4 cut(s)	296, 352, 846, 868
FatI	CATG	5 cut(s)	18, 108, 219, 420, 510
FauI	CCCGC	4 cut(s)	135, 819, 845, 857
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	7 cut(s)	39, 87, 242, 313, 375, 620, 739
FokI	GGATG	3 cut(s)	638, 712, 850
Fsp4HI	GCNGC	7 cut(s)	39, 87, 242, 313, 375, 620, 739
FspBI	CTAG	2 cut(s)	251, 501
GlaI	GCGC	6 cut(s)	240, 518, 664, 742, 794, 815
GluI	GCNGC	7 cut(s)	39, 87, 242, 313, 375, 620, 739
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	3 cut(s)	234, 425, 482
HapII	CCGG	3 cut(s)	371, 538, 797
HgaI	GACGC	2 cut(s)	387, 493
HhaI	GCGC	6 cut(s)	241, 519, 665, 743, 795, 816
Hin1II	CATG	5 cut(s)	22, 112, 223, 424, 514
Hin6I	GCGC	6 cut(s)	239, 517, 663, 741, 793, 814
HinP1I	GCGC	6 cut(s)	239, 517, 663, 741, 793, 814
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	2 cut(s)	68, 302
HpaII	CCGG	3 cut(s)	371, 538, 797
HphI	GGTGA	3 cut(s)	601, 811, 863
Hpy166II	GTNNAC	4 cut(s)	138, 301, 402, 592
Hpy188I	TCNGA	7 cut(s)	67, 94, 181, 332, 411, 446, 487
Hpy188III	TCNNGA	3 cut(s)	251, 467, 550
Hpy8I	GTNNAC	4 cut(s)	138, 301, 402, 592
Hpy99I	CGWCG	1 cut(s)	479
HpyAV	CCTTC	2 cut(s)	317, 676
HpyCH4III	ACNGT	4 cut(s)	32, 764, 779, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 172, 501, 744
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	5 cut(s)	22, 112, 223, 424, 514
HspAI	GCGC	6 cut(s)	239, 517, 663, 741, 793, 814
KpnI	GGTACC	1 cut(s)	644
KspI	CCGCGG	1 cut(s)	853
Kzo9I	GATC	2 cut(s)	332, 828
LmnI	GCTCC	7 cut(s)	110, 122, 262, 514, 575, 634, 712
Lsp1109I	GCAGC	4 cut(s)	73, 253, 361, 606
LweI	GCATC	2 cut(s)	98, 616
MaeI	CTAG	2 cut(s)	251, 501
MaeIII	GTNAC	3 cut(s)	578, 869, 878
MalI	GATC	2 cut(s)	334, 830
MbiI	CCGCTC	1 cut(s)	738
MboI	GATC	2 cut(s)	332, 828
MboII	GAAGA	2 cut(s)	659, 718
MflI	RGATCY	1 cut(s)	828
MhlI	GDGCHC	1 cut(s)	749
MlyI	GAGTC	2 cut(s)	62, 296
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	416
MslI	CAYNNNNRTG	1 cut(s)	419
MspA1I	CMGCKG	3 cut(s)	576, 852, 876
MspI	CCGG	3 cut(s)	371, 538, 797
MspR9I	CCNGG	2 cut(s)	371, 797
MvnI	CGCG	4 cut(s)	315, 743, 814, 852
MwoI	GCNNNNNNNGC	4 cut(s)	10, 172, 501, 744
NciI	CCSGG	2 cut(s)	371, 797
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	332, 828
NlaIII	CATG	5 cut(s)	22, 112, 223, 424, 514
NlaIV	GGNNCC	4 cut(s)	284, 607, 642, 809
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	2 cut(s)	869, 878
PceI	AGGCCT	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	602
PinAI	ACCGGT	1 cut(s)	537
PkrI	GCNGC	7 cut(s)	40, 88, 243, 314, 376, 621, 740
PleI	GAGTC	2 cut(s)	62, 296
PpsI	GAGTC	2 cut(s)	62, 296
PpuMI	RGGWCCY	1 cut(s)	283
PshAI	GACNNNNGTC	1 cut(s)	762
PsiI	TTATAA	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	283
PspEI	GGTNACC	1 cut(s)	869
PspN4I	GGNNCC	4 cut(s)	284, 607, 642, 809
PspPI	GGNCC	2 cut(s)	283, 841
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	2 cut(s)	624, 836
PsuI	RGATCY	1 cut(s)	828
RsaI	GTAC	2 cut(s)	113, 642
RsaNI	GTAC	2 cut(s)	112, 641
RseI	CAYNNNNRTG	1 cut(s)	419
SacII	CCGCGG	1 cut(s)	853
SatI	GCNGC	7 cut(s)	39, 87, 242, 313, 375, 620, 739
Sau3AI	GATC	2 cut(s)	332, 828
Sau96I	GGNCC	2 cut(s)	283, 841
SchI	GAGTC	2 cut(s)	62, 296
ScrFI	CCNGG	2 cut(s)	371, 797
SduI	GDGCHC	1 cut(s)	749
SfaNI	GCATC	2 cut(s)	98, 616
SfcI	CTRYAG	2 cut(s)	620, 832
Sfr303I	CCGCGG	1 cut(s)	853
SgrBI	CCGCGG	1 cut(s)	853
SinI	GGWCC	2 cut(s)	283, 841
SmiMI	CAYNNNNRTG	1 cut(s)	419
SseBI	AGGCCT	1 cut(s)	482
SspMI	CTAG	2 cut(s)	251, 501
StuI	AGGCCT	1 cut(s)	482
StyD4I	CCNGG	2 cut(s)	369, 795
StyI	CCWWGG	2 cut(s)	18, 694
TaaI	ACNGT	4 cut(s)	32, 764, 779, 869
TatI	WGTACW	1 cut(s)	111
TauI	GCSGC	3 cut(s)	41, 315, 741
TseFI	GTSAC	2 cut(s)	869, 878
TseI	GCWGC	4 cut(s)	86, 241, 374, 619
Tsp45I	GTSAC	2 cut(s)	869, 878
TspDTI	ATGAA	1 cut(s)	409
TspGWI	ACGGA	1 cut(s)	725
Van91I	CCANNNNNTGG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	283, 841
XbaI	TCTAGA	1 cut(s)	250
XmiI	GTMKAC	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	2 cut(s)	251, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.