Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Forward (+)

29099332 .. 29100539

Gene Structure 1208 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCAAAGCAAGCAAGCCATGGAGACCAACAGTAGTGCCGCCTCCCCGAACTCATCAGCGTTATCCGACTCTACTACTCACCAACCTGCTGCATCAGATTTTGCCAGCTCCATGTATAGCTCCATTTTCCCGCAAAAGTTCACTCTCCCCAGTTCCCTTTCTCTAACTCCCTCAACGCTCTCCGATGACGACGGCGACCACCACGACGACGACTGCAACACCATGCACCGCCTCGGCCAAGCTCAGCTCGTTCTAGAGTGCGAGGAGCTTCGCAACCACCTCAGGGACCTCAACAACGAGGTAGATTCGCTTCGCCGCGAGAACGCTGTCCTCCGATCTGCAAACACCGATTTGGTCAAGCTTCTGTCGTCCCCGGCAGCTCTCCACAACTTCCTCAATGCGTCCACTTATCTGAACAGTTTCATGGCCGATGAGTTGAAGCCACTCGGAGTGGGAGTATTTAGTCCTCGTGATGGCGACGAGGCCTCCGATATCAGCCCCACTAGCGTCATCATGGAGCGCAACCGGTTCAATGCCGACCGCTTCTCACTCCCGAAAAGCATTTCGGTTCGCTCCAGCGGTTACAAAAAGGTGAACCCATCATTTGGTGCCAACCAACTGCTGCAGGATGGTCCTGCAAGGGTACCCGAAGAGGGGAGTAGTGGTGCAATGCAAGTGAAAGTGAAGGCTTATAACCAAGGGATGTTGAAGACGGAGCTTTGCAACAAGTGGGAGGAGACCGGCGCGTGCCCTTATGGAGACAACTGTCAGTTCGCTCACGGCGTTAGAGAACTGCGTCCGGTGATGAGGCACCCGCGCTACAAGACCCAGATCTGCAGGATGGTCCTCACCCGAGGGACTTGTCCCTACGGTCACCGCTGTCACTTCCGCCACTCCCTCAACGACCAACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

305

Amino Acids

33.84

Weight (kDa)

6.63

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	237 - 261	4.7e-12	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	241 - 260	1.5e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	94
Acc65I	GGTACC	1 cut(s)	643
AccB1I	GGYRCC	3 cut(s)	608, 643, 810
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccII	CGCG	3 cut(s)	318, 746, 817
AciI	CCGC	9 cut(s)	39, 131, 229, 316, 541, 579, 815, 877, 889
AcoI	YGGCCR	2 cut(s)	235, 426
AfaI	GTAC	1 cut(s)	645
AfiI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
AgeI	ACCGGT	1 cut(s)	525
AgsI	TTSAA	3 cut(s)	439, 532, 709
AluBI	AGCT	8 cut(s)	108, 120, 242, 247, 268, 361, 380, 718
AluI	AGCT	8 cut(s)	108, 120, 242, 247, 268, 361, 380, 718
Alw26I	GTCTC	3 cut(s)	17, 731, 753
Ama87I	CYCGRG	1 cut(s)	852
AoxI	GGCC	3 cut(s)	235, 426, 483
ApeKI	GCWGC	3 cut(s)	89, 377, 622
AsiGI	ACCGGT	1 cut(s)	525
Asp700I	GAANNNNTTC	1 cut(s)	419
Asp718I	GGTACC	1 cut(s)	643
AspLEI	GCGC	3 cut(s)	522, 746, 819
AspS9I	GGNCC	3 cut(s)	286, 632, 844
AsuC2I	CCSGG	1 cut(s)	374
AsuHPI	GGTGA	5 cut(s)	71, 604, 814, 841, 866
AvaI	CYCGRG	1 cut(s)	852
AvaII	GGWCC	3 cut(s)	286, 632, 844
AxyI	CCTNAGG	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	752
BanI	GGYRCC	3 cut(s)	608, 643, 810
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	3 cut(s)	76, 389, 609
BccI	CCATC	4 cut(s)	467, 607, 623, 835
BceAI	ACGGC	2 cut(s)	208, 796
BcnI	CCSGG	1 cut(s)	374
BcoDI	GTCTC	3 cut(s)	17, 731, 753
BfaI	CTAG	2 cut(s)	254, 504
BfmI	CTRYAG	2 cut(s)	623, 835
BfuAI	ACCTGC	1 cut(s)	94
BglII	AGATCT	1 cut(s)	831
BisI	GCNGC	5 cut(s)	39, 90, 316, 378, 623
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	5 cut(s)	40, 91, 317, 379, 624
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	3 cut(s)	286, 632, 844
BmeT110I	CYCGRG	1 cut(s)	852
BmgT120I	GGNCC	3 cut(s)	286, 632, 844
BmiI	GGNNCC	4 cut(s)	287, 610, 645, 812
BmrFI	CCNGG	1 cut(s)	374
BmrI	ACTGGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	101
BmuI	ACTGGG	1 cut(s)	144
BoxI	GACNNNNGTC	1 cut(s)	765
BpiI	GAAGAC	1 cut(s)	716
BpmI	CTGGAG	1 cut(s)	559
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	374
BsaI	GGTCTC	2 cut(s)	17, 731
BsaJI	CCNNGG	5 cut(s)	18, 232, 372, 697, 853
BsaWI	WCCGGW	2 cut(s)	525, 799
BsaXI	ACNNNNNCTCC	6 cut(s)	441, 470, 471, 500, 649, 679
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
Bse118I	RCCGGY	2 cut(s)	525, 740
Bse1I	ACTGG	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	675
BseDI	CCNNGG	5 cut(s)	18, 232, 372, 697, 853
BseGI	GGATG	3 cut(s)	634, 708, 846
BseLI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	2 cut(s)	257, 295
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	2 cut(s)	278, 749
BseSI	GKGCMC	1 cut(s)	752
BseXI	GCAGC	3 cut(s)	76, 389, 609
Bsh1236I	CGCG	3 cut(s)	318, 746, 817
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	237, 428, 485
BshNI	GGYRCC	3 cut(s)	608, 643, 810
BshTI	ACCGGT	1 cut(s)	525
BsiEI	CGRYCG	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	852
BsiSI	CCGG	4 cut(s)	374, 526, 741, 800
BslFI	GGGAC	4 cut(s)	299, 355, 849, 871
BslI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
BsmAI	GTCTC	3 cut(s)	17, 731, 753
BsmFI	GGGAC	4 cut(s)	299, 355, 849, 871
BsnI	GGCC	3 cut(s)	237, 428, 485
Bso31I	GGTCTC	2 cut(s)	17, 731
BsoBI	CYCGRG	1 cut(s)	852
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp143I	GATC	2 cut(s)	335, 831
Bsp1720I	GCTNAGC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	9 cut(s)	39, 131, 229, 316, 541, 579, 815, 877, 889
BspANI	GGCC	3 cut(s)	237, 428, 485
BspCNI	CTCAG	2 cut(s)	256, 294
BspFNI	CGCG	3 cut(s)	318, 746, 817
BspLI	GGNNCC	4 cut(s)	287, 610, 645, 812
BspMAI	CTGCAG	2 cut(s)	627, 839
BspMI	ACCTGC	1 cut(s)	94
BspT107I	GGYRCC	3 cut(s)	608, 643, 810
BspTNI	GGTCTC	2 cut(s)	17, 731
BsrDI	GCAATG	1 cut(s)	675
BsrFI	RCCGGY	2 cut(s)	525, 740
BsrI	ACTGG	1 cut(s)	150
BssAI	RCCGGY	2 cut(s)	525, 740
BssECI	CCNNGG	5 cut(s)	18, 232, 372, 697, 853
BssMI	GATC	2 cut(s)	335, 831
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	18, 697
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	4 cut(s)	32, 419, 767, 872
Bst6I	CTCTTC	1 cut(s)	645
BstC8I	GCNNGC	4 cut(s)	11, 15, 106, 748
BstDEI	CTNAG	2 cut(s)	243, 281
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	872
BstF5I	GGATG	3 cut(s)	634, 708, 846
BstFNI	CGCG	3 cut(s)	318, 746, 817
BstHHI	GCGC	3 cut(s)	522, 746, 819
BstKTI	GATC	2 cut(s)	338, 834
BstMAI	GTCTC	3 cut(s)	17, 731, 753
BstMBI	GATC	2 cut(s)	335, 831
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 504
BstPAI	GACNNNNGTC	1 cut(s)	765
BstPI	GGTNACC	1 cut(s)	872
BstSCI	CCNGG	1 cut(s)	372
BstSFI	CTRYAG	2 cut(s)	623, 835
BstSLI	GKGCMC	1 cut(s)	752
BstUI	CGCG	3 cut(s)	318, 746, 817
BstV1I	GCAGC	3 cut(s)	76, 389, 609
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	237, 428, 485
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	3 cut(s)	634, 708, 846
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	4 cut(s)	11, 15, 106, 748
CfoI	GCGC	3 cut(s)	522, 746, 819
Cfr10I	RCCGGY	2 cut(s)	525, 740
Cfr13I	GGNCC	3 cut(s)	286, 632, 844
CseI	GACGC	3 cut(s)	390, 496, 785
Csp6I	GTAC	1 cut(s)	644
CspAI	ACCGGT	1 cut(s)	525
CviAII	CATG	5 cut(s)	19, 112, 223, 424, 514
CviQI	GTAC	1 cut(s)	644
DdeI	CTNAG	2 cut(s)	243, 281
DpnI	GATC	2 cut(s)	337, 833
DpnII	GATC	2 cut(s)	335, 831
EaeI	YGGCCR	2 cut(s)	235, 426
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	878
Eco130I	CCWWGG	2 cut(s)	18, 697
Eco147I	AGGCCT	1 cut(s)	485
Eco31I	GGTCTC	2 cut(s)	17, 731
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	3 cut(s)	286, 632, 844
Eco81I	CCTNAGG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	852
Eco91I	GGTNACC	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	872
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	18, 697
ErhI	CCWWGG	2 cut(s)	18, 697
FaeI	CATG	5 cut(s)	22, 115, 226, 427, 517
FaiI	YATR	9 cut(s)	20, 113, 117, 224, 425, 515, 693, 756, 912
FaqI	GGGAC	4 cut(s)	299, 355, 849, 871
FatI	CATG	5 cut(s)	18, 111, 222, 423, 513
FauI	CCCGC	2 cut(s)	138, 822
Fnu4HI	GCNGC	5 cut(s)	39, 90, 316, 378, 623
FokI	GGATG	3 cut(s)	641, 715, 853
Fsp4HI	GCNGC	5 cut(s)	39, 90, 316, 378, 623
FspBI	CTAG	2 cut(s)	254, 504
GlaI	GCGC	3 cut(s)	521, 745, 818
GluI	GCNGC	5 cut(s)	39, 90, 316, 378, 623
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	237, 428, 485
HapII	CCGG	4 cut(s)	374, 526, 741, 800
HgaI	GACGC	3 cut(s)	390, 496, 785
HhaI	GCGC	3 cut(s)	522, 746, 819
Hin1II	CATG	5 cut(s)	22, 115, 226, 427, 517
Hin6I	GCGC	3 cut(s)	520, 744, 817
HinP1I	GCGC	3 cut(s)	520, 744, 817
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	68, 305
HpaII	CCGG	4 cut(s)	374, 526, 741, 800
HphI	GGTGA	5 cut(s)	71, 604, 814, 841, 866
Hpy166II	GTNNAC	3 cut(s)	141, 405, 595
Hpy188I	TCNGA	7 cut(s)	67, 97, 184, 335, 414, 449, 490
Hpy188III	TCNNGA	3 cut(s)	254, 470, 553
Hpy8I	GTNNAC	3 cut(s)	141, 405, 595
Hpy99I	CGWCG	4 cut(s)	194, 209, 212, 482
HpyAV	CCTTC	1 cut(s)	679
HpyCH4III	ACNGT	4 cut(s)	32, 419, 767, 872
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 504
HpyF3I	CTNAG	2 cut(s)	243, 281
Hsp92II	CATG	5 cut(s)	22, 115, 226, 427, 517
HspAI	GCGC	3 cut(s)	520, 744, 817
KpnI	GGTACC	1 cut(s)	647
Kzo9I	GATC	2 cut(s)	335, 831
LmnI	GCTCC	6 cut(s)	113, 125, 265, 517, 578, 715
Lsp1109I	GCAGC	3 cut(s)	76, 389, 609
LweI	GCATC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	254, 504
MaeIII	GTNAC	3 cut(s)	581, 872, 881
MalI	GATC	2 cut(s)	337, 833
MboI	GATC	2 cut(s)	335, 831
MboII	GAAGA	2 cut(s)	662, 721
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	1 cut(s)	752
MlyI	GAGTC	1 cut(s)	62
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	419
MspA1I	CMGCKG	2 cut(s)	579, 879
MspI	CCGG	4 cut(s)	374, 526, 741, 800
MspR9I	CCNGG	1 cut(s)	374
MvnI	CGCG	3 cut(s)	318, 746, 817
MwoI	GCNNNNNNNGC	2 cut(s)	10, 504
NciI	CCSGG	1 cut(s)	374
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	335, 831
NlaIII	CATG	5 cut(s)	22, 115, 226, 427, 517
NlaIV	GGNNCC	4 cut(s)	287, 610, 645, 812
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	872, 881
PceI	AGGCCT	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	2 cut(s)	486, 780
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	605
PinAI	ACCGGT	1 cut(s)	525
PkrI	GCNGC	5 cut(s)	40, 91, 317, 379, 624
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	286
PshAI	GACNNNNGTC	1 cut(s)	765
PsiI	TTATAA	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	872
PspN4I	GGNNCC	4 cut(s)	287, 610, 645, 812
PspPI	GGNCC	3 cut(s)	286, 632, 844
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	2 cut(s)	627, 839
PsuI	RGATCY	1 cut(s)	831
RsaI	GTAC	1 cut(s)	645
RsaNI	GTAC	1 cut(s)	644
SatI	GCNGC	5 cut(s)	39, 90, 316, 378, 623
Sau3AI	GATC	2 cut(s)	335, 831
Sau96I	GGNCC	3 cut(s)	286, 632, 844
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	1 cut(s)	752
SfaNI	GCATC	1 cut(s)	101
SfcI	CTRYAG	2 cut(s)	623, 835
SinI	GGWCC	3 cut(s)	286, 632, 844
SseBI	AGGCCT	1 cut(s)	485
SsiI	CCGC	9 cut(s)	39, 131, 229, 316, 541, 579, 815, 877, 889
SspMI	CTAG	2 cut(s)	254, 504
StuI	AGGCCT	1 cut(s)	485
StyD4I	CCNGG	1 cut(s)	372
StyI	CCWWGG	2 cut(s)	18, 697
TaaI	ACNGT	4 cut(s)	32, 419, 767, 872
TauI	GCSGC	2 cut(s)	41, 318
TfiI	GAWTC	1 cut(s)	305
TseFI	GTSAC	2 cut(s)	872, 881
TseI	GCWGC	3 cut(s)	89, 377, 622
Tsp45I	GTSAC	2 cut(s)	872, 881
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	728
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	3 cut(s)	286, 632, 844
XbaI	TCTAGA	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	2 cut(s)	254, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.