Prupe.3G149200_v2.0.a1

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
16304825 .. 16306237
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G149200.1

Sequence Viewer

Length: 936 bp
ATGGAGACCAACGCCGCCTTTCCAACCTCACCCGATTCGTCGACCCGAGATTTCGGCTCCGATTTCGCCTCAATGTACCGCTCCATTTTCCCGCCCAAATTCACACTCCCGAGCTCCCTCTCCCTCACTCCCTCCACTCGCTCCTCCTTCTCGGACTCCGATTCCAACTCCGACGACCACCACCATAATCACAATGCTACGTCGCAGCGCCTCACCCAGGCTCAGCTTATCCTCGAGTCCCAGGAGCTCCGCGACCACTACGATCTCTGCAGCGCTCACCTCCGCGACCTCGCCGACGAACTCGACTCTCTCCGCCTGGAGAACTCCCATCTCCGGTCCGCGAACTCCGACCTCGTCAAGCTCCTCTCGTCGCAGGCCGCCTTCCAGAGCTTCCTCCTCTCATCCTCCTCGTCGTCCGCGTATCAGAGTCCTTCCACGCCGTCGTTTCTCGACGACTTTCGGCGGCTCGGATTCGGATCTCTCGGTCCTCGCGACGGCGTCGTTTCCGACGAGGCCTCGGATATCAGTCCCACGAGCGTCATCGAGCGAAACCGGTTCGACGTCGTAGACCGGGTTGCGCTCCCCAAGAGCATTTCCGTCCGCTCCTCGACTCGGCCACGTGTCCCTAGCCAACTCTTTTCTGGCTCGCCCACTCAGAGCCAAGTGAAGGTGTTCAATCAGGGGATGGTGAAGACGGAGCTGTGCAACAAGTGGGAGGAGACTGGCACGTGTCCGTACGGAGAGAACTGCCAGTTTGCTCACGGCGTTAGGGAGCTCCGTCCGGTGATGAGGCACCCGCGCTACAAGACTCAGCTCTGCCGGATGGTTGCAGCTGGCGGCAAGTGTCCGTACGGTCACCGCTGCCACTTCCGTCACTCGCTGACTGAGCAGGAGAGGCTGCAACTGGCCATGGCAGCAGAGACTCGTTTTGATTAG

Protein Analysis

312

Amino Acids

34.72

Weight (kDa)

6.63

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010741)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 792
AccBSI CCGCTC 2 cut(s) 81, 603
AccI GTMKAC 2 cut(s) 41, 567
AccII CGCG 6 cut(s) 252, 285, 341, 419, 492, 799
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 2 cut(s) 614, 906
AcsI RAATTY 1 cut(s) 98
AcvI CACGTG 2 cut(s) 620, 729
AcyI GRCGYC 2 cut(s) 498, 561
AfaI GTAC 3 cut(s) 77, 737, 851
AfeI AGCGCT 1 cut(s) 274
AfiI CCNNNNNNNGG 5 cut(s) 217, 333, 494, 612, 667
AflIII ACRYGT 2 cut(s) 619, 728
AgeI ACCGGT 1 cut(s) 552
AgsI TTSAA 1 cut(s) 676
AjnI CCWGG 3 cut(s) 216, 240, 315
AluBI AGCT 9 cut(s) 114, 226, 247, 361, 390, 700, 775, 814, 833
AluI AGCT 9 cut(s) 114, 226, 247, 361, 390, 700, 775, 814, 833
Alw21I GWGCWC 3 cut(s) 116, 249, 777
Alw26I GTCTC 2 cut(s) 713, 914
AlwI GGATC 1 cut(s) 484
Ama87I CYCGRG 3 cut(s) 45, 109, 233
Aor51HI AGCGCT 1 cut(s) 274
AoxI GGCC 4 cut(s) 375, 513, 614, 906
ApeKI GCWGC 6 cut(s) 205, 270, 830, 861, 898, 914
ApoI RAATTY 1 cut(s) 98
AsiGI ACCGGT 1 cut(s) 552
Asp700I GAANNNNTTC 1 cut(s) 671
AspLEI GCGC 4 cut(s) 210, 275, 580, 801
AspS9I GGNCC 2 cut(s) 336, 485
AsuC2I CCSGG 1 cut(s) 572
AsuHPI GGTGA 6 cut(s) 21, 205, 269, 700, 796, 848
AvaI CYCGRG 3 cut(s) 45, 109, 233
AvaII GGWCC 2 cut(s) 336, 485
BalI TGGCCA 1 cut(s) 908
BanI GGYRCC 1 cut(s) 792
BanII GRGCYC 3 cut(s) 116, 249, 777
BauI CACGAG 1 cut(s) 532
BbrPI CACGTG 2 cut(s) 620, 729
BbsI GAAGAC 1 cut(s) 698
Bbv12I GWGCWC 3 cut(s) 116, 249, 777
BbvI GCAGC 6 cut(s) 217, 282, 842, 848, 885, 926
BccI CCATC 3 cut(s) 336, 679, 817
BceAI ACGGC 3 cut(s) 424, 511, 778
BciT130I CCWGG 3 cut(s) 218, 242, 317
BcnI CCSGG 1 cut(s) 572
BcoDI GTCTC 2 cut(s) 713, 914
BfaI CTAG 1 cut(s) 627
BfmI CTRYAG 1 cut(s) 268
BfoI RGCGCY 2 cut(s) 211, 276
BlpI GCTNAGC 1 cut(s) 222
Bme1390I CCNGG 4 cut(s) 218, 242, 317, 572
Bme18I GGWCC 2 cut(s) 336, 485
BmeT110I CYCGRG 3 cut(s) 45, 109, 233
BmgT120I GGNCC 2 cut(s) 336, 485
BmiI GGNNCC 2 cut(s) 58, 794
BmrFI CCNGG 4 cut(s) 218, 242, 317, 572
BpiI GAAGAC 1 cut(s) 698
BpmI CTGGAG 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 572
BsaAI YACGTR 2 cut(s) 620, 729
BsaBI GATNNNNATC 1 cut(s) 475
BsaHI GRCGYC 2 cut(s) 498, 561
BsaJI CCNNGG 4 cut(s) 216, 240, 516, 909
BsaWI WCCGGW 3 cut(s) 333, 552, 781
Bsc4I CCNNNNNNNGG 5 cut(s) 217, 333, 494, 612, 667
Bse118I RCCGGY 1 cut(s) 552
Bse1I ACTGG 3 cut(s) 727, 751, 909
Bse8I GATNNNNATC 1 cut(s) 475
BseBI CCWGG 3 cut(s) 218, 242, 317
BseDI CCNNGG 4 cut(s) 216, 240, 516, 909
BseGI GGATG 3 cut(s) 401, 690, 828
BseJI GATNNNNATC 1 cut(s) 475
BseLI CCNNNNNNNGG 5 cut(s) 217, 333, 494, 612, 667
BseMII CTCAG 4 cut(s) 236, 668, 824, 876
BseNI ACTGG 3 cut(s) 727, 751, 909
BseRI GAGGAG 6 cut(s) 133, 353, 386, 397, 595, 731
BseXI GCAGC 6 cut(s) 217, 282, 842, 848, 885, 926
Bsh1236I CGCG 6 cut(s) 252, 285, 341, 419, 492, 799
BshFI GGCC 4 cut(s) 377, 515, 616, 908
BshNI GGYRCC 1 cut(s) 792
BshTI ACCGGT 1 cut(s) 552
BsiHKAI GWGCWC 3 cut(s) 116, 249, 777
BsiHKCI CYCGRG 3 cut(s) 45, 109, 233
BsiSI CCGG 5 cut(s) 334, 553, 571, 782, 820
BsiWI CGTACG 2 cut(s) 735, 849
BslFI GGGAC 3 cut(s) 223, 513, 608
BslI CCNNNNNNNGG 5 cut(s) 217, 333, 494, 612, 667
BsmAI GTCTC 2 cut(s) 713, 914
BsmFI GGGAC 3 cut(s) 223, 513, 608
BsnI GGCC 4 cut(s) 377, 515, 616, 908
BsoBI CYCGRG 3 cut(s) 45, 109, 233
Bsp1286I GDGCHC 3 cut(s) 116, 249, 777
Bsp143I GATC 2 cut(s) 262, 476
Bsp1720I GCTNAGC 1 cut(s) 222
Bsp19I CCATGG 1 cut(s) 909
Bsp68I TCGCGA 1 cut(s) 492
BspANI GGCC 4 cut(s) 377, 515, 616, 908
BspCNI CTCAG 4 cut(s) 235, 667, 823, 877
BspFNI CGCG 6 cut(s) 252, 285, 341, 419, 492, 799
BspLI GGNNCC 2 cut(s) 58, 794
BspMAI CTGCAG 1 cut(s) 272
BspPI GGATC 1 cut(s) 484
BspT107I GGYRCC 1 cut(s) 792
BsrBI CCGCTC 2 cut(s) 81, 603
BsrFI RCCGGY 1 cut(s) 552
BsrI ACTGG 3 cut(s) 727, 751, 909
BssAI RCCGGY 1 cut(s) 552
BssECI CCNNGG 4 cut(s) 216, 240, 516, 909
BssMI GATC 2 cut(s) 262, 476
BssNI GRCGYC 2 cut(s) 498, 561
BssSI CACGAG 1 cut(s) 532
BssT1I CCWWGG 1 cut(s) 909
Bst2BI CACGAG 1 cut(s) 532
Bst2UI CCWGG 3 cut(s) 218, 242, 317
Bst4CI ACNGT 1 cut(s) 854
BstACI GRCGYC 2 cut(s) 498, 561
BstBAI YACGTR 2 cut(s) 620, 729
BstC8I GCNNGC 3 cut(s) 375, 647, 835
BstDEI CTNAG 4 cut(s) 222, 654, 810, 885
BstDSI CCRYGG 1 cut(s) 909
BstEII GGTNACC 1 cut(s) 854
BstENI CCTNNNNNAGG 1 cut(s) 215
BstF5I GGATG 3 cut(s) 401, 690, 828
BstFNI CGCG 6 cut(s) 252, 285, 341, 419, 492, 799
BstH2I RGCGCY 2 cut(s) 211, 276
BstHHI GCGC 4 cut(s) 210, 275, 580, 801
BstKTI GATC 2 cut(s) 265, 479
BstMAI GTCTC 2 cut(s) 713, 914
BstMBI GATC 2 cut(s) 262, 476
BstMWI GCNNNNNNNGC 3 cut(s) 886, 895, 914
BstNI CCWGG 3 cut(s) 218, 242, 317
BstPI GGTNACC 1 cut(s) 854
BstSCI CCNGG 4 cut(s) 216, 240, 315, 570
BstSFI CTRYAG 1 cut(s) 268
BstUI CGCG 6 cut(s) 252, 285, 341, 419, 492, 799
BstV1I GCAGC 6 cut(s) 217, 282, 842, 848, 885, 926
BstV2I GAAGAC 1 cut(s) 698
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
BsuRI GGCC 4 cut(s) 377, 515, 616, 908
BtgI CCRYGG 1 cut(s) 909
BtsCI GGATG 3 cut(s) 401, 690, 828
BtuMI TCGCGA 1 cut(s) 492
Cac8I GCNNGC 3 cut(s) 375, 647, 835
CfoI GCGC 4 cut(s) 210, 275, 580, 801
Cfr10I RCCGGY 1 cut(s) 552
Cfr13I GGNCC 2 cut(s) 336, 485
CpoI CGGWCCG 1 cut(s) 336
CseI GACGC 2 cut(s) 487, 526
Csp6I GTAC 3 cut(s) 76, 736, 850
CspAI ACCGGT 1 cut(s) 552
CspI CGGWCCG 1 cut(s) 336
CviAII CATG 1 cut(s) 910
CviQI GTAC 3 cut(s) 76, 736, 850
DdeI CTNAG 4 cut(s) 222, 654, 810, 885
DpnI GATC 2 cut(s) 264, 478
DpnII GATC 2 cut(s) 262, 476
EaeI YGGCCR 2 cut(s) 614, 906
EciI GGCGGA 1 cut(s) 302
Ecl136II GAGCTC 3 cut(s) 114, 247, 775
Eco130I CCWWGG 1 cut(s) 909
Eco147I AGGCCT 1 cut(s) 515
Eco24I GRGCYC 3 cut(s) 116, 249, 777
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 336, 485
Eco47III AGCGCT 1 cut(s) 274
Eco53kI GAGCTC 3 cut(s) 114, 247, 775
Eco72I CACGTG 2 cut(s) 620, 729
Eco88I CYCGRG 3 cut(s) 45, 109, 233
Eco91I GGTNACC 1 cut(s) 854
EcoICRI GAGCTC 3 cut(s) 114, 247, 775
EcoNI CCTNNNNNAGG 1 cut(s) 215
EcoO65I GGTNACC 1 cut(s) 854
EcoRII CCWGG 3 cut(s) 216, 240, 315
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 1 cut(s) 909
EcoT38I GRGCYC 3 cut(s) 116, 249, 777
ErhI CCWWGG 1 cut(s) 909
FaeI CATG 1 cut(s) 913
FaiI YATR 2 cut(s) 186, 911
FaqI GGGAC 3 cut(s) 223, 513, 608
FatI CATG 1 cut(s) 909
FauI CCCGC 2 cut(s) 99, 804
FblI GTMKAC 2 cut(s) 41, 567
FokI GGATG 3 cut(s) 388, 697, 835
FriOI GRGCYC 3 cut(s) 116, 249, 777
FspBI CTAG 1 cut(s) 627
GlaI GCGC 4 cut(s) 209, 274, 579, 800
GsuI CTGGAG 1 cut(s) 338
HaeII RGCGCY 2 cut(s) 211, 276
HaeIII GGCC 4 cut(s) 377, 515, 616, 908
HapII CCGG 5 cut(s) 334, 553, 571, 782, 820
HgaI GACGC 2 cut(s) 487, 526
HhaI GCGC 4 cut(s) 210, 275, 580, 801
Hin1I GRCGYC 2 cut(s) 498, 561
Hin1II CATG 1 cut(s) 913
Hin6I GCGC 4 cut(s) 208, 273, 578, 799
HinP1I GCGC 4 cut(s) 208, 273, 578, 799
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HpaII CCGG 5 cut(s) 334, 553, 571, 782, 820
HphI GGTGA 6 cut(s) 21, 205, 269, 700, 796, 848
Hpy166II GTNNAC 2 cut(s) 42, 568
Hpy188III TCNNGA 4 cut(s) 109, 385, 449, 491
Hpy8I GTNNAC 2 cut(s) 42, 568
HpyAV CCTTC 4 cut(s) 157, 391, 441, 661
HpyCH4III ACNGT 1 cut(s) 854
HpyCH4IV ACGT 4 cut(s) 200, 561, 619, 728
HpyCH4V TGCA 4 cut(s) 270, 705, 830, 901
HpyF10VI GCNNNNNNNGC 3 cut(s) 886, 895, 914
HpyF3I CTNAG 4 cut(s) 222, 654, 810, 885
HpySE526I ACGT 4 cut(s) 200, 561, 619, 728
Hsp92I GRCGYC 2 cut(s) 498, 561
Hsp92II CATG 1 cut(s) 913
HspAI GCGC 4 cut(s) 208, 273, 578, 799
Kzo9I GATC 2 cut(s) 262, 476
Lsp1109I GCAGC 6 cut(s) 217, 282, 842, 848, 885, 926
MaeI CTAG 1 cut(s) 627
MaeII ACGT 4 cut(s) 200, 561, 619, 728
MaeIII GTNAC 2 cut(s) 854, 872
MalI GATC 2 cut(s) 264, 478
MbiI CCGCTC 2 cut(s) 81, 603
MboI GATC 2 cut(s) 262, 476
MboII GAAGA 1 cut(s) 703
MflI RGATCY 1 cut(s) 476
MhlI GDGCHC 3 cut(s) 116, 249, 777
MlsI TGGCCA 1 cut(s) 908
MluCI AATT 1 cut(s) 98
MluNI TGGCCA 1 cut(s) 908
MlyI GAGTC 7 cut(s) 149, 245, 299, 436, 604, 802, 916
MmeI TCCRAC 5 cut(s) 47, 189, 195, 372, 531
Mox20I TGGCCA 1 cut(s) 908
MroXI GAANNNNTTC 1 cut(s) 671
MscI TGGCCA 1 cut(s) 908
Msp20I TGGCCA 1 cut(s) 908
MspA1I CMGCKG 2 cut(s) 833, 861
MspI CCGG 5 cut(s) 334, 553, 571, 782, 820
MspR9I CCNGG 4 cut(s) 218, 242, 317, 572
MvaI CCWGG 3 cut(s) 218, 242, 317
MvnI CGCG 6 cut(s) 252, 285, 341, 419, 492, 799
MwoI GCNNNNNNNGC 3 cut(s) 886, 895, 914
NciI CCSGG 1 cut(s) 572
NcoI CCATGG 1 cut(s) 909
NdeII GATC 2 cut(s) 262, 476
NlaIII CATG 1 cut(s) 913
NlaIV GGNNCC 2 cut(s) 58, 794
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 2 cut(s) 854, 872
NruI TCGCGA 1 cut(s) 492
PaeR7I CTCGAG 1 cut(s) 233
PceI AGGCCT 1 cut(s) 515
PcsI WCGNNNNNNNCGW 3 cut(s) 416, 489, 507
PdmI GAANNNNTTC 1 cut(s) 671
PfeI GAWTC 3 cut(s) 35, 161, 471
Pfl23II CGTACG 2 cut(s) 735, 849
PflFI GACNNNGTC 2 cut(s) 353, 497
PinAI ACCGGT 1 cut(s) 552
PleI GAGTC 7 cut(s) 149, 244, 299, 435, 604, 802, 916
PmaCI CACGTG 2 cut(s) 620, 729
PmlI CACGTG 2 cut(s) 620, 729
PpsI GAGTC 7 cut(s) 149, 244, 299, 435, 604, 802, 916
Ppu21I YACGTR 2 cut(s) 620, 729
Psp124BI GAGCTC 3 cut(s) 116, 249, 777
Psp6I CCWGG 3 cut(s) 216, 240, 315
PspCI CACGTG 2 cut(s) 620, 729
PspEI GGTNACC 1 cut(s) 854
PspGI CCWGG 3 cut(s) 216, 240, 315
PspLI CGTACG 2 cut(s) 735, 849
PspN4I GGNNCC 2 cut(s) 58, 794
PspPI GGNCC 2 cut(s) 336, 485
PspXI VCTCGAGB 1 cut(s) 233
PstI CTGCAG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 476
PsyI GACNNNGTC 2 cut(s) 353, 497
PvuII CAGCTG 1 cut(s) 833
RruI TCGCGA 1 cut(s) 492
RsaI GTAC 3 cut(s) 77, 737, 851
RsaNI GTAC 3 cut(s) 76, 736, 850
Rsr2I CGGWCCG 1 cut(s) 336
RsrII CGGWCCG 1 cut(s) 336
SacI GAGCTC 3 cut(s) 116, 249, 777
SalI GTCGAC 1 cut(s) 40
Sau3AI GATC 2 cut(s) 262, 476
Sau96I GGNCC 2 cut(s) 336, 485
SchI GAGTC 7 cut(s) 149, 245, 299, 436, 604, 802, 916
ScrFI CCNGG 4 cut(s) 218, 242, 317, 572
SduI GDGCHC 3 cut(s) 116, 249, 777
SfcI CTRYAG 1 cut(s) 268
Sfr274I CTCGAG 1 cut(s) 233
SinI GGWCC 2 cut(s) 336, 485
SlaI CTCGAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 98
SseBI AGGCCT 1 cut(s) 515
SspMI CTAG 1 cut(s) 627
SstI GAGCTC 3 cut(s) 116, 249, 777
StuI AGGCCT 1 cut(s) 515
StyD4I CCNGG 4 cut(s) 216, 240, 315, 570
StyI CCWWGG 1 cut(s) 909
TaaI ACNGT 1 cut(s) 854
TaiI ACGT 4 cut(s) 203, 564, 622, 731
TaqI TCGA 7 cut(s) 41, 234, 303, 450, 543, 558, 608
TaqII GACCGA 1 cut(s) 473
TasI AATT 1 cut(s) 98
TauI GCSGC 4 cut(s) 17, 380, 466, 840
TfiI GAWTC 3 cut(s) 35, 161, 471
TseFI GTSAC 2 cut(s) 854, 872
TseI GCWGC 6 cut(s) 205, 270, 830, 861, 898, 914
Tsp45I GTSAC 2 cut(s) 854, 872
TspGWI ACGGA 7 cut(s) 586, 710, 723, 753, 767, 837, 860
Tth111I GACNNNGTC 2 cut(s) 353, 497
VpaK11BI GGWCC 2 cut(s) 336, 485
XagI CCTNNNNNAGG 1 cut(s) 215
XapI RAATTY 1 cut(s) 98
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XhoI CTCGAG 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 41, 567
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 1 cut(s) 627
ZraI GACGTC 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.