Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009637.1

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Reverse (-)

3289 .. 4286

Gene Structure 998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009637.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

atgcaaagcaagcaagccatggagaccaacagtagtgccgcctccccaaactcatcagcgttatccgactctactaaccaacctgcagctgcctcagattttgccagctccatgtatagctccattttcccgcaaaagttcactcttccaagttccctttctctaacgccctcaacgctctccgatgacgacggcgaccaccacgacgatgactgcaacaccatgcaccgcctcggccaagctcagctcgttctagagtgcgaggagcttcgcaaccacctcagggacctcaacaacgaggtagactcgcttcgccgcgagaacgctgtcctccgatctgcaaacaccgatttggtcaagcttctgtcgtccccgttagctctccacaacttccttaatgcctccacctatctgaacactttcatggccgatgagttgaagccactgggagtgggagtatttagtcctcgtgatggcgacgaggcctccgatatcagccccactagcgtcatcatggagcgcaaccgcttcaatgccgaccggttctcactgccgaaaagcatttcggttcgctccagaggttacaaaaaggtgaacccatcatttggtgccaaccaactgctgaaggatggtcctgcaagggtacccgaagaggggagtagtggcgcaatgcaagtgaaagtgaaggcttataaccaagggatgttgaagacggagctttgcaacaagtgggaggagagcggcgcgtgcccttatggagacaactgtcagttcgctcacggcgttagagaactgcgtccggtgatgaggcacccgcgctacaagacccagatctgcaggatggtcctcacccgcgggacttgcccctacggtcaccgctgtcacttccgccactccctcaacgaccaacatagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

305

Amino Acids

33.9

Weight (kDa)

7.16

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	91
Acc65I	GGTACC	1 cut(s)	643
AccB1I	GGYRCC	3 cut(s)	608, 643, 810
AccB7I	CCANNNNNTGG	1 cut(s)	605
AccBSI	CCGCTC	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	303
AccII	CGCG	4 cut(s)	318, 746, 817, 855
AcoI	YGGCCR	2 cut(s)	235, 426
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	1 cut(s)	645
AfiI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
AgeI	ACCGGT	1 cut(s)	540
AgsI	TTSAA	3 cut(s)	439, 532, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	9 cut(s)	89, 108, 120, 242, 247, 268, 361, 380, 718
AluI	AGCT	9 cut(s)	89, 108, 120, 242, 247, 268, 361, 380, 718
Alw26I	GTCTC	2 cut(s)	17, 753
AoxI	GGCC	3 cut(s)	235, 426, 483
ApeKI	GCWGC	2 cut(s)	86, 89
AsiGI	ACCGGT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	419
Asp718I	GGTACC	1 cut(s)	643
AspLEI	GCGC	4 cut(s)	522, 668, 746, 819
AspS9I	GGNCC	3 cut(s)	286, 632, 844
AsuHPI	GGTGA	4 cut(s)	604, 814, 841, 866
AvaII	GGWCC	3 cut(s)	286, 632, 844
AxyI	CCTNAGG	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	752
BanI	GGYRCC	3 cut(s)	608, 643, 810
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BauI	CACGAG	1 cut(s)	468
BbsI	GAAGAC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	76, 98
BccI	CCATC	4 cut(s)	467, 607, 623, 835
BceAI	ACGGC	2 cut(s)	208, 796
BcoDI	GTCTC	2 cut(s)	17, 753
BfaI	CTAG	2 cut(s)	254, 504
BfmI	CTRYAG	2 cut(s)	84, 835
BfuAI	ACCTGC	1 cut(s)	91
BglII	AGATCT	1 cut(s)	831
BisI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	5 cut(s)	40, 88, 91, 317, 743
Bme18I	GGWCC	3 cut(s)	286, 632, 844
BmgT120I	GGNCC	3 cut(s)	286, 632, 844
BmiI	GGNNCC	4 cut(s)	287, 610, 645, 812
BmrI	ACTGGG	1 cut(s)	455
BmuI	ACTGGG	1 cut(s)	455
BoxI	GACNNNNGTC	1 cut(s)	765
BpiI	GAAGAC	1 cut(s)	716
BplI	GAGNNNNNCTC	2 cut(s)	290, 322
BpmI	CTGGAG	1 cut(s)	559
Bpu1102I	GCTNAGC	1 cut(s)	243
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	18, 232, 697, 853
BsaWI	WCCGGW	2 cut(s)	540, 799
BsaXI	ACNNNNNCTCC	4 cut(s)	441, 470, 471, 500
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
Bse118I	RCCGGY	1 cut(s)	540
Bse1I	ACTGG	1 cut(s)	450
Bse21I	CCTNAGG	1 cut(s)	281
Bse3DI	GCAATG	1 cut(s)	675
BseDI	CCNNGG	4 cut(s)	18, 232, 697, 853
BseGI	GGATG	3 cut(s)	634, 708, 846
BseLI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
BseMI	GCAATG	1 cut(s)	675
BseMII	CTCAG	3 cut(s)	108, 257, 295
BseNI	ACTGG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	278, 749
BseSI	GKGCMC	1 cut(s)	752
BseXI	GCAGC	2 cut(s)	76, 98
Bsh1236I	CGCG	4 cut(s)	318, 746, 817, 855
Bsh1285I	CGRYCG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	237, 428, 485
BshNI	GGYRCC	3 cut(s)	608, 643, 810
BshTI	ACCGGT	1 cut(s)	540
BsiEI	CGRYCG	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	541, 800
BslFI	GGGAC	3 cut(s)	299, 355, 871
BslI	CCNNNNNNNGG	5 cut(s)	283, 473, 605, 653, 654
BsmAI	GTCTC	2 cut(s)	17, 753
BsmFI	GGGAC	3 cut(s)	299, 355, 871
BsnI	GGCC	3 cut(s)	237, 428, 485
Bso31I	GGTCTC	1 cut(s)	17
Bsp1286I	GDGCHC	1 cut(s)	752
Bsp143I	GATC	2 cut(s)	335, 831
Bsp1720I	GCTNAGC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	18
BspANI	GGCC	3 cut(s)	237, 428, 485
BspCNI	CTCAG	3 cut(s)	107, 256, 294
BspFNI	CGCG	4 cut(s)	318, 746, 817, 855
BspLI	GGNNCC	4 cut(s)	287, 610, 645, 812
BspMAI	CTGCAG	2 cut(s)	88, 839
BspMI	ACCTGC	1 cut(s)	91
BspT107I	GGYRCC	3 cut(s)	608, 643, 810
BspTNI	GGTCTC	1 cut(s)	17
BsrBI	CCGCTC	1 cut(s)	741
BsrDI	GCAATG	1 cut(s)	675
BsrFI	RCCGGY	1 cut(s)	540
BsrI	ACTGG	1 cut(s)	450
BssAI	RCCGGY	1 cut(s)	540
BssECI	CCNNGG	4 cut(s)	18, 232, 697, 853
BssMI	GATC	2 cut(s)	335, 831
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	2 cut(s)	18, 697
Bst2BI	CACGAG	1 cut(s)	468
Bst4CI	ACNGT	3 cut(s)	32, 767, 872
Bst6I	CTCTTC	2 cut(s)	150, 645
BstC8I	GCNNGC	4 cut(s)	11, 15, 106, 748
BstDEI	CTNAG	3 cut(s)	94, 243, 281
BstDSI	CCRYGG	2 cut(s)	18, 853
BstEII	GGTNACC	1 cut(s)	872
BstF5I	GGATG	3 cut(s)	634, 708, 846
BstFNI	CGCG	4 cut(s)	318, 746, 817, 855
BstHHI	GCGC	4 cut(s)	522, 668, 746, 819
BstKTI	GATC	2 cut(s)	338, 834
BstMAI	GTCTC	2 cut(s)	17, 753
BstMBI	GATC	2 cut(s)	335, 831
BstMCI	CGRYCG	1 cut(s)	541
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 175, 504, 747, 861
BstPAI	GACNNNNGTC	1 cut(s)	765
BstPI	GGTNACC	1 cut(s)	872
BstSFI	CTRYAG	2 cut(s)	84, 835
BstSLI	GKGCMC	1 cut(s)	752
BstUI	CGCG	4 cut(s)	318, 746, 817, 855
BstV1I	GCAGC	2 cut(s)	76, 98
BstV2I	GAAGAC	1 cut(s)	716
BstX2I	RGATCY	1 cut(s)	831
BstYI	RGATCY	1 cut(s)	831
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	3 cut(s)	237, 428, 485
BtgI	CCRYGG	2 cut(s)	18, 853
BtsCI	GGATG	3 cut(s)	634, 708, 846
BtsI	GCAGTG	1 cut(s)	548
BtsIMutI	CAGTG	2 cut(s)	443, 548
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	4 cut(s)	11, 15, 106, 748
CfoI	GCGC	4 cut(s)	522, 668, 746, 819
Cfr10I	RCCGGY	1 cut(s)	540
Cfr13I	GGNCC	3 cut(s)	286, 632, 844
Cfr42I	CCGCGG	1 cut(s)	856
CseI	GACGC	2 cut(s)	496, 785
Csp6I	GTAC	1 cut(s)	644
CspAI	ACCGGT	1 cut(s)	540
CviAII	CATG	5 cut(s)	19, 112, 223, 424, 514
CviQI	GTAC	1 cut(s)	644
DdeI	CTNAG	3 cut(s)	94, 243, 281
DpnI	GATC	2 cut(s)	337, 833
DpnII	GATC	2 cut(s)	335, 831
EaeI	YGGCCR	2 cut(s)	235, 426
Eam1104I	CTCTTC	2 cut(s)	150, 645
EarI	CTCTTC	2 cut(s)	150, 645
EciI	GGCGGA	1 cut(s)	878
Eco130I	CCWWGG	2 cut(s)	18, 697
Eco147I	AGGCCT	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	17
Eco32I	GATATC	1 cut(s)	493
Eco47I	GGWCC	3 cut(s)	286, 632, 844
Eco57I	CTGAAG	1 cut(s)	644
Eco81I	CCTNAGG	1 cut(s)	281
Eco91I	GGTNACC	1 cut(s)	872
EcoO109I	RGGNCCY	1 cut(s)	286
EcoO65I	GGTNACC	1 cut(s)	872
EcoRV	GATATC	1 cut(s)	493
EcoT14I	CCWWGG	2 cut(s)	18, 697
ErhI	CCWWGG	2 cut(s)	18, 697
FaeI	CATG	5 cut(s)	22, 115, 226, 427, 517
FaiI	YATR	9 cut(s)	20, 113, 117, 224, 425, 515, 693, 756, 912
FaqI	GGGAC	3 cut(s)	299, 355, 871
FatI	CATG	5 cut(s)	18, 111, 222, 423, 513
FauI	CCCGC	4 cut(s)	138, 822, 848, 860
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
FokI	GGATG	3 cut(s)	641, 715, 853
Fsp4HI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
FspBI	CTAG	2 cut(s)	254, 504
GlaI	GCGC	4 cut(s)	521, 667, 745, 818
GluI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	237, 428, 485
HapII	CCGG	2 cut(s)	541, 800
HgaI	GACGC	2 cut(s)	496, 785
HhaI	GCGC	4 cut(s)	522, 668, 746, 819
Hin1II	CATG	5 cut(s)	22, 115, 226, 427, 517
Hin6I	GCGC	4 cut(s)	520, 666, 744, 817
HinP1I	GCGC	4 cut(s)	520, 666, 744, 817
HindIII	AAGCTT	1 cut(s)	359
HinfI	GANTC	2 cut(s)	68, 305
HpaII	CCGG	2 cut(s)	541, 800
HphI	GGTGA	4 cut(s)	604, 814, 841, 866
Hpy166II	GTNNAC	3 cut(s)	141, 304, 595
Hpy188I	TCNGA	6 cut(s)	67, 97, 184, 335, 414, 490
Hpy188III	TCNNGA	3 cut(s)	254, 470, 576
Hpy8I	GTNNAC	3 cut(s)	141, 304, 595
Hpy99I	CGWCG	3 cut(s)	194, 209, 482
HpyAV	CCTTC	2 cut(s)	619, 679
HpyCH4III	ACNGT	3 cut(s)	32, 767, 872
HpyCH4V	TGCA	9 cut(s)	4, 86, 216, 226, 341, 638, 673, 723, 837
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 175, 504, 747, 861
HpyF3I	CTNAG	3 cut(s)	94, 243, 281
Hsp92II	CATG	5 cut(s)	22, 115, 226, 427, 517
HspAI	GCGC	4 cut(s)	520, 666, 744, 817
KpnI	GGTACC	1 cut(s)	647
KspI	CCGCGG	1 cut(s)	856
Kzo9I	GATC	2 cut(s)	335, 831
LmnI	GCTCC	6 cut(s)	113, 125, 265, 517, 578, 715
Lsp1109I	GCAGC	2 cut(s)	76, 98
MaeI	CTAG	2 cut(s)	254, 504
MaeIII	GTNAC	3 cut(s)	581, 872, 881
MalI	GATC	2 cut(s)	337, 833
MbiI	CCGCTC	1 cut(s)	741
MboI	GATC	2 cut(s)	335, 831
MboII	GAAGA	3 cut(s)	137, 662, 721
MflI	RGATCY	1 cut(s)	831
MhlI	GDGCHC	1 cut(s)	752
MlyI	GAGTC	2 cut(s)	62, 299
MmeI	TCCRAC	1 cut(s)	90
MroXI	GAANNNNTTC	1 cut(s)	419
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	207, 422
MspA1I	CMGCKG	3 cut(s)	89, 855, 879
MspI	CCGG	2 cut(s)	541, 800
MvnI	CGCG	4 cut(s)	318, 746, 817, 855
MwoI	GCNNNNNNNGC	5 cut(s)	10, 175, 504, 747, 861
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	335, 831
NlaIII	CATG	5 cut(s)	22, 115, 226, 427, 517
NlaIV	GGNNCC	4 cut(s)	287, 610, 645, 812
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	872, 881
PceI	AGGCCT	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	2 cut(s)	486, 780
PdmI	GAANNNNTTC	1 cut(s)	419
PflMI	CCANNNNNTGG	1 cut(s)	605
PinAI	ACCGGT	1 cut(s)	540
PkrI	GCNGC	5 cut(s)	40, 88, 91, 317, 743
PleI	GAGTC	2 cut(s)	62, 299
PpsI	GAGTC	2 cut(s)	62, 299
PpuMI	RGGWCCY	1 cut(s)	286
PshAI	GACNNNNGTC	1 cut(s)	765
PsiI	TTATAA	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	872
PspN4I	GGNNCC	4 cut(s)	287, 610, 645, 812
PspPI	GGNCC	3 cut(s)	286, 632, 844
PspPPI	RGGWCCY	1 cut(s)	286
PstI	CTGCAG	2 cut(s)	88, 839
PsuI	RGATCY	1 cut(s)	831
PvuII	CAGCTG	1 cut(s)	89
RsaI	GTAC	1 cut(s)	645
RsaNI	GTAC	1 cut(s)	644
RseI	CAYNNNNRTG	2 cut(s)	207, 422
SacII	CCGCGG	1 cut(s)	856
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	5 cut(s)	39, 87, 90, 316, 742
Sau3AI	GATC	2 cut(s)	335, 831
Sau96I	GGNCC	3 cut(s)	286, 632, 844
SchI	GAGTC	2 cut(s)	62, 299
SduI	GDGCHC	1 cut(s)	752
SfcI	CTRYAG	2 cut(s)	84, 835
Sfr303I	CCGCGG	1 cut(s)	856
SgrBI	CCGCGG	1 cut(s)	856
SinI	GGWCC	3 cut(s)	286, 632, 844
SmiMI	CAYNNNNRTG	2 cut(s)	207, 422
SseBI	AGGCCT	1 cut(s)	485
SspMI	CTAG	2 cut(s)	254, 504
StuI	AGGCCT	1 cut(s)	485
StyI	CCWWGG	2 cut(s)	18, 697
TaaI	ACNGT	3 cut(s)	32, 767, 872
TauI	GCSGC	3 cut(s)	41, 318, 744
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	2 cut(s)	450, 555
TseFI	GTSAC	2 cut(s)	872, 881
TseI	GCWGC	2 cut(s)	86, 89
Tsp45I	GTSAC	2 cut(s)	872, 881
TspDTI	ATGAA	1 cut(s)	412
TspGWI	ACGGA	1 cut(s)	728
TspRI	CASTG	2 cut(s)	450, 555
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	3 cut(s)	286, 632, 844
XbaI	TCTAGA	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	2 cut(s)	254, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.