Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010741

Physical Location & Seq

Genomic Coordinates Forward (+)

33462601 .. 33463673

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG151600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTTCTAACTGTTTTGATGGTTCAACTTGTCAATTATATTATTCATCCTCTCAATTACGTGAGGTAGCTACAATGCAAAGCAAGCAAGCCATGGAGACCAACAGTAGTGCCGCCTCCCCAAACTCATCAGCGTTATCCGACTCTACTAACCAACCTGCAGCTGCATCAGATTTTGCCAGCTCCATGTATAGCTCCATTTTCCCGCAAAAGTTCACTCTCCCAAGTTCCCTTTCTCTAACGCCCTCAACGGTCTCCGATGACGACGGCGACCACCACGACGATGACTGCAACACCATGCACCGCCTCGGCCAAGCTCAGCTCGTTCTAGAGTGCGAGGAGCTTCGCAACCACCTCAGGGACCTCAACAACGAGGTAGACTCGCTTCGCCGCGAGAACGCTGTCCTCCGATCTGCAAACACCGATTTGGTCAAGCTTCTGTCGTCCCCGGCAGCTCTCCACAACTTCCTCAATGCGTCCACCTATCTGAACACTTTCATGGCCGATGAGTTGAAGCCACTGGGAGTGGGAGTATTTAGTCCTCGTGATGGCGATGAGGCCTCCGATATCAGCCCCACTAGCGTCATCATGGAGCGCAACCGCTTCAATGCAGACCGGTTCTCACTCCCGAAAAGCATTTCGGTTCGCTCCAGCGGTTACAAAAAGGTGAACCCATCATTTGGTGCCAACCAACTGCTGCAGGATGGTCCTGCAAGGGTACCCAAAGAGGGGAGTAGTGGCGCAATGCAAGTGAAAGTGAAGGCTTATAACCAAGGGATGTTGAAGACGGAGCTTTGCAACAAGTGGGAGGAGAGCGGCGCGTGCCCTTATGGAGACAACTGTCAGTTCGCTCACGGCGTTAGAGAACTGCGTCCGGTGATGAGGCACCCGCGCTACAAGACCCAGATCTGCAGGATGGTCCTCACCCGCGGGACTTGTCCCTACGGTCACCGCTGTCACTTCCGCCACTCCCTCAACGACCAACATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030308 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0040008 GO:0043487 GO:0043488 GO:0044087 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045926 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048638 GO:0048640 GO:0050779 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0051510 GO:0051511 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901347 GO:1901363 GO:1902680 GO:1903311 GO:1903313 GO:1903338 GO:1903339 GO:1903506 GO:1903508 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04218 map04218

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

330

Amino Acids

36.51

Weight (kDa)

6.82

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	262 - 286	4.3e-11	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf_CCCH_4	PF18345	266 - 285	1.9e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66810 AT1G66810 AT1G66810
fragaria_vesca	FvH4_4g11300
malus_domestica	MD09G1257000.v1.1 MD17G1250600.v1.1
prunus_persica	Prupe.3G149200_v2.0.a1 Prupe.3G149200_v2.0.a1
pyrus_communis	pycom17g25450
rosa_chinensis	RchiOBHm_Chr4g0407541
rosa_laevigata	RLG00000008712
rosa_multiflora	Rmu_co8436737.1_g000001 Rmu_sc0009637.1_g000002
rosa_roxburghii	Rroxscaffold_5G00352160
rosa_rugosa	Rorug04G0080200
rosa_samantha	Rh4AG144900 Rh4BG142800 Rh4CG151600 Rh4DG138800
rosa_wichuraiana	Rw4G011780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
Acc36I	ACCTGC	1 cut(s)	166
Acc65I	GGTACC	1 cut(s)	718
AccB1I	GGYRCC	3 cut(s)	683, 718, 885
AccB7I	CCANNNNNTGG	1 cut(s)	680
AccBSI	CCGCTC	1 cut(s)	816
AccI	GTMKAC	1 cut(s)	378
AccII	CGCG	4 cut(s)	393, 821, 892, 930
AcoI	YGGCCR	2 cut(s)	310, 501
AfaI	GTAC	1 cut(s)	720
AfiI	CCNNNNNNNGG	5 cut(s)	358, 548, 680, 728, 729
AgeI	ACCGGT	1 cut(s)	615
AgsI	TTSAA	4 cut(s)	27, 514, 607, 784
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
Alw26I	GTCTC	3 cut(s)	92, 259, 828
AoxI	GGCC	3 cut(s)	310, 501, 558
ApeKI	GCWGC	4 cut(s)	161, 164, 452, 697
AsiGI	ACCGGT	1 cut(s)	615
Asp700I	GAANNNNTTC	1 cut(s)	494
Asp718I	GGTACC	1 cut(s)	718
AspLEI	GCGC	4 cut(s)	597, 743, 821, 894
AspS9I	GGNCC	3 cut(s)	361, 707, 919
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	4 cut(s)	679, 889, 916, 941
AvaII	GGWCC	3 cut(s)	361, 707, 919
AxyI	CCTNAGG	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	827
BanI	GGYRCC	3 cut(s)	683, 718, 885
BarI	GAAGNNNNNNTAC	2 cut(s)	369, 401
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	791
BbvI	GCAGC	4 cut(s)	151, 173, 464, 684
BccI	CCATC	5 cut(s)	14, 542, 682, 698, 910
BceAI	ACGGC	2 cut(s)	283, 871
BcnI	CCSGG	1 cut(s)	449
BcoDI	GTCTC	3 cut(s)	92, 259, 828
BfaI	CTAG	2 cut(s)	329, 579
BfmI	CTRYAG	3 cut(s)	159, 698, 910
BfuAI	ACCTGC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	906
BisI	GCNGC	7 cut(s)	114, 162, 165, 391, 453, 698, 817
BlpI	GCTNAGC	1 cut(s)	318
BlsI	GCNGC	7 cut(s)	115, 163, 166, 392, 454, 699, 818
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	3 cut(s)	361, 707, 919
BmgT120I	GGNCC	3 cut(s)	361, 707, 919
BmiI	GGNNCC	4 cut(s)	362, 685, 720, 887
BmrFI	CCNGG	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	530
BoxI	GACNNNNGTC	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	365, 397
BpmI	CTGGAG	1 cut(s)	634
Bpu1102I	GCTNAGC	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	62
BsaI	GGTCTC	2 cut(s)	92, 259
BsaJI	CCNNGG	5 cut(s)	93, 307, 447, 772, 928
BsaWI	WCCGGW	2 cut(s)	615, 874
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	5 cut(s)	358, 548, 680, 728, 729
Bse118I	RCCGGY	1 cut(s)	615
Bse1I	ACTGG	1 cut(s)	525
Bse21I	CCTNAGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	750
BseDI	CCNNGG	5 cut(s)	93, 307, 447, 772, 928
BseGI	GGATG	4 cut(s)	47, 709, 783, 921
BseLI	CCNNNNNNNGG	5 cut(s)	358, 548, 680, 728, 729
BseMI	GCAATG	1 cut(s)	750
BseMII	CTCAG	2 cut(s)	332, 370
BseNI	ACTGG	1 cut(s)	525
BseRI	GAGGAG	2 cut(s)	353, 824
BseSI	GKGCMC	1 cut(s)	827
BseXI	GCAGC	4 cut(s)	151, 173, 464, 684
Bsh1236I	CGCG	4 cut(s)	393, 821, 892, 930
BshFI	GGCC	3 cut(s)	312, 503, 560
BshNI	GGYRCC	3 cut(s)	683, 718, 885
BshTI	ACCGGT	1 cut(s)	615
BsiSI	CCGG	3 cut(s)	449, 616, 875
BslFI	GGGAC	4 cut(s)	374, 430, 924, 946
BslI	CCNNNNNNNGG	5 cut(s)	358, 548, 680, 728, 729
BsmAI	GTCTC	3 cut(s)	92, 259, 828
BsmFI	GGGAC	4 cut(s)	374, 430, 924, 946
BsnI	GGCC	3 cut(s)	312, 503, 560
Bso31I	GGTCTC	2 cut(s)	92, 259
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp143I	GATC	2 cut(s)	410, 906
Bsp1720I	GCTNAGC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	93
BspANI	GGCC	3 cut(s)	312, 503, 560
BspCNI	CTCAG	2 cut(s)	331, 369
BspFNI	CGCG	4 cut(s)	393, 821, 892, 930
BspLI	GGNNCC	4 cut(s)	362, 685, 720, 887
BspMAI	CTGCAG	3 cut(s)	163, 702, 914
BspMI	ACCTGC	1 cut(s)	166
BspT107I	GGYRCC	3 cut(s)	683, 718, 885
BspTNI	GGTCTC	2 cut(s)	92, 259
BsrBI	CCGCTC	1 cut(s)	816
BsrDI	GCAATG	1 cut(s)	750
BsrFI	RCCGGY	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	525
BssAI	RCCGGY	1 cut(s)	615
BssECI	CCNNGG	5 cut(s)	93, 307, 447, 772, 928
BssMI	GATC	2 cut(s)	410, 906
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	2 cut(s)	93, 772
Bst2BI	CACGAG	1 cut(s)	543
Bst4CI	ACNGT	5 cut(s)	14, 107, 253, 842, 947
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	4 cut(s)	86, 90, 181, 823
BstDEI	CTNAG	2 cut(s)	318, 356
BstDSI	CCRYGG	2 cut(s)	93, 928
BstEII	GGTNACC	1 cut(s)	947
BstF5I	GGATG	4 cut(s)	47, 709, 783, 921
BstFNI	CGCG	4 cut(s)	393, 821, 892, 930
BstHHI	GCGC	4 cut(s)	597, 743, 821, 894
BstKTI	GATC	2 cut(s)	413, 909
BstMAI	GTCTC	3 cut(s)	92, 259, 828
BstMBI	GATC	2 cut(s)	410, 906
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 579, 822
BstPAI	GACNNNNGTC	1 cut(s)	840
BstPI	GGTNACC	1 cut(s)	947
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	3 cut(s)	159, 698, 910
BstSLI	GKGCMC	1 cut(s)	827
BstUI	CGCG	4 cut(s)	393, 821, 892, 930
BstV1I	GCAGC	4 cut(s)	151, 173, 464, 684
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	906
Bsu36I	CCTNAGG	1 cut(s)	356
BsuRI	GGCC	3 cut(s)	312, 503, 560
BtgI	CCRYGG	2 cut(s)	93, 928
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	4 cut(s)	47, 709, 783, 921
BtsIMutI	CAGTG	1 cut(s)	518
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	4 cut(s)	86, 90, 181, 823
CfoI	GCGC	4 cut(s)	597, 743, 821, 894
Cfr10I	RCCGGY	1 cut(s)	615
Cfr13I	GGNCC	3 cut(s)	361, 707, 919
Cfr42I	CCGCGG	1 cut(s)	931
CseI	GACGC	3 cut(s)	465, 571, 860
Csp6I	GTAC	1 cut(s)	719
CspAI	ACCGGT	1 cut(s)	615
CviAII	CATG	5 cut(s)	94, 187, 298, 499, 589
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	2 cut(s)	318, 356
DpnI	GATC	2 cut(s)	412, 908
DpnII	GATC	2 cut(s)	410, 906
EaeI	YGGCCR	2 cut(s)	310, 501
EciI	GGCGGA	1 cut(s)	953
Eco130I	CCWWGG	2 cut(s)	93, 772
Eco147I	AGGCCT	1 cut(s)	560
Eco31I	GGTCTC	2 cut(s)	92, 259
Eco32I	GATATC	1 cut(s)	568
Eco47I	GGWCC	3 cut(s)	361, 707, 919
Eco81I	CCTNAGG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	947
EcoO109I	RGGNCCY	1 cut(s)	361
EcoO65I	GGTNACC	1 cut(s)	947
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	2 cut(s)	93, 772
ErhI	CCWWGG	2 cut(s)	93, 772
FaeI	CATG	5 cut(s)	97, 190, 301, 502, 592
FaqI	GGGAC	4 cut(s)	374, 430, 924, 946
FatI	CATG	5 cut(s)	93, 186, 297, 498, 588
FauI	CCCGC	4 cut(s)	213, 897, 923, 935
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	7 cut(s)	114, 162, 165, 391, 453, 698, 817
FokI	GGATG	4 cut(s)	34, 716, 790, 928
Fsp4HI	GCNGC	7 cut(s)	114, 162, 165, 391, 453, 698, 817
FspBI	CTAG	2 cut(s)	329, 579
GlaI	GCGC	4 cut(s)	596, 742, 820, 893
GluI	GCNGC	7 cut(s)	114, 162, 165, 391, 453, 698, 817
GsuI	CTGGAG	1 cut(s)	634
HaeIII	GGCC	3 cut(s)	312, 503, 560
HapII	CCGG	3 cut(s)	449, 616, 875
HgaI	GACGC	3 cut(s)	465, 571, 860
HhaI	GCGC	4 cut(s)	597, 743, 821, 894
Hin1II	CATG	5 cut(s)	97, 190, 301, 502, 592
Hin6I	GCGC	4 cut(s)	595, 741, 819, 892
HinP1I	GCGC	4 cut(s)	595, 741, 819, 892
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	2 cut(s)	143, 380
HpaII	CCGG	3 cut(s)	449, 616, 875
HphI	GGTGA	4 cut(s)	679, 889, 916, 941
Hpy166II	GTNNAC	4 cut(s)	216, 379, 480, 670
Hpy188I	TCNGA	6 cut(s)	142, 172, 259, 410, 489, 565
Hpy188III	TCNNGA	3 cut(s)	329, 545, 628
Hpy8I	GTNNAC	4 cut(s)	216, 379, 480, 670
Hpy99I	CGWCG	2 cut(s)	269, 284
HpyAV	CCTTC	1 cut(s)	754
HpyCH4III	ACNGT	5 cut(s)	14, 107, 253, 842, 947
HpyCH4IV	ACGT	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 579, 822
HpyF3I	CTNAG	2 cut(s)	318, 356
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	5 cut(s)	97, 190, 301, 502, 592
HspAI	GCGC	4 cut(s)	595, 741, 819, 892
KpnI	GGTACC	1 cut(s)	722
KspI	CCGCGG	1 cut(s)	931
Kzo9I	GATC	2 cut(s)	410, 906
LmnI	GCTCC	6 cut(s)	188, 200, 340, 592, 653, 790
Lsp1109I	GCAGC	4 cut(s)	151, 173, 464, 684
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	2 cut(s)	329, 579
MaeII	ACGT	1 cut(s)	61
MaeIII	GTNAC	3 cut(s)	656, 947, 956
MalI	GATC	2 cut(s)	412, 908
MbiI	CCGCTC	1 cut(s)	816
MboI	GATC	2 cut(s)	410, 906
MboII	GAAGA	1 cut(s)	796
MflI	RGATCY	1 cut(s)	906
MhlI	GDGCHC	1 cut(s)	827
MluCI	AATT	2 cut(s)	35, 56
MlyI	GAGTC	2 cut(s)	137, 374
MmeI	TCCRAC	1 cut(s)	165
MroXI	GAANNNNTTC	1 cut(s)	494
MslI	CAYNNNNRTG	2 cut(s)	282, 497
MspA1I	CMGCKG	4 cut(s)	164, 654, 930, 954
MspI	CCGG	3 cut(s)	449, 616, 875
MspR9I	CCNGG	1 cut(s)	449
MvnI	CGCG	4 cut(s)	393, 821, 892, 930
MwoI	GCNNNNNNNGC	3 cut(s)	85, 579, 822
NciI	CCSGG	1 cut(s)	449
NcoI	CCATGG	1 cut(s)	93
NdeII	GATC	2 cut(s)	410, 906
NlaIII	CATG	5 cut(s)	97, 190, 301, 502, 592
NlaIV	GGNNCC	4 cut(s)	362, 685, 720, 887
NmeAIII	GCCGAG	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	947, 956
PceI	AGGCCT	1 cut(s)	560
PcsI	WCGNNNNNNNCGW	1 cut(s)	855
PdmI	GAANNNNTTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	680
PinAI	ACCGGT	1 cut(s)	615
PkrI	GCNGC	7 cut(s)	115, 163, 166, 392, 454, 699, 818
PleI	GAGTC	2 cut(s)	137, 374
PpsI	GAGTC	2 cut(s)	137, 374
Ppu21I	YACGTR	1 cut(s)	62
PpuMI	RGGWCCY	1 cut(s)	361
PshAI	GACNNNNGTC	1 cut(s)	840
PsiI	TTATAA	1 cut(s)	768
Psp5II	RGGWCCY	1 cut(s)	361
PspEI	GGTNACC	1 cut(s)	947
PspN4I	GGNNCC	4 cut(s)	362, 685, 720, 887
PspPI	GGNCC	3 cut(s)	361, 707, 919
PspPPI	RGGWCCY	1 cut(s)	361
PstI	CTGCAG	3 cut(s)	163, 702, 914
PsuI	RGATCY	1 cut(s)	906
PvuII	CAGCTG	1 cut(s)	164
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
RseI	CAYNNNNRTG	2 cut(s)	282, 497
SacII	CCGCGG	1 cut(s)	931
SatI	GCNGC	7 cut(s)	114, 162, 165, 391, 453, 698, 817
Sau3AI	GATC	2 cut(s)	410, 906
Sau96I	GGNCC	3 cut(s)	361, 707, 919
SchI	GAGTC	2 cut(s)	137, 374
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	827
SfaNI	GCATC	1 cut(s)	176
SfcI	CTRYAG	3 cut(s)	159, 698, 910
Sfr303I	CCGCGG	1 cut(s)	931
SgrBI	CCGCGG	1 cut(s)	931
SinI	GGWCC	3 cut(s)	361, 707, 919
SmiMI	CAYNNNNRTG	2 cut(s)	282, 497
Sse9I	AATT	2 cut(s)	35, 56
SseBI	AGGCCT	1 cut(s)	560
SspMI	CTAG	2 cut(s)	329, 579
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	2 cut(s)	93, 772
TaaI	ACNGT	5 cut(s)	14, 107, 253, 842, 947
TaiI	ACGT	1 cut(s)	64
TasI	AATT	2 cut(s)	35, 56
TauI	GCSGC	3 cut(s)	116, 393, 819
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	2 cut(s)	947, 956
TseI	GCWGC	4 cut(s)	161, 164, 452, 697
Tsp45I	GTSAC	2 cut(s)	947, 956
TspDTI	ATGAA	2 cut(s)	36, 487
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	1 cut(s)	525
Van91I	CCANNNNNTGG	1 cut(s)	680
VpaK11BI	GGWCC	3 cut(s)	361, 707, 919
XbaI	TCTAGA	1 cut(s)	328
XmiI	GTMKAC	1 cut(s)	378
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	2 cut(s)	329, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.