Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007912

Physical Location & Seq

Genomic Coordinates Forward (+)

25132498 .. 25134470

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G67190.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGACTATCTTCCTGTGGAAGTTATTGGAAACATACTCTCACGTCTCGGAGGAGCTCGTGATGTTGTGATAGCTTCAGCAACATGTAGAAAATGGCGAGAAGCTTGTAGGAAACATCTTCAAACACTTTCTTTCAATTCCGCTGATTGGCCGTTTTATCGAGACCTTACAACGAATCGTTTAGAGATTCTTATAACTCAAACCATTTTCCAAACCATGGGGCTGCAAGGTCTTTCTATTATGATGGATGATGCGAATAAGTTTTCGGCTGCCACAGTTATCGCTTGGCTTATGTATACGAGAGACACTTTGCGGAGATTGTCTTATAATGTCAGGACGACTCCTAATGTTAACATTCTTGAAATCTGTGGGAGGCAGAAGCTTGAAGCTTTGGTTTTGGCTCATAATTCTATTACTGGTGTTGAACCAAGTTTTCAGAGGTTTCCTTGTTTGAAGTCTCTGTCACTGAGTTATGTTAGTATTTCAGCTTTGGATTTGAATCTTTTGCTTAGTGCTTGTCCGATGATCGAGAGTTTGGAACTTGTGAGTCTCGAGATTGCAATGTCGGATGCGCAAGTGACAATTGAGTTGAGTAGCCCGACGCTGAAGAGTGTTTATTTCGATGGGATTAGTTTGGATAAGTTTATCTTGGAGGCTGATAGTATTGAGTTCTTGCATATGAAAGACTGTGTTCTCGAGCTTTTTGAGCTAATAGGAAACGGGACTTTGAAGCATTTTAAGCTTGATGATGTTAGTGTTATACATCTTGATATCATGGAGACATCTGAAAGCCTTGAAGTAGTTGATGTCAATCACTTCACAATGGTTTGGCCAAAGTTCTATCAGATGATCTCAAGGTCACAGAAACTAAAGAAACTTCGTCTTTGGGATGTGGTTTTTGATGATGACGATGAAATCATCGATGTTGAGTCCATTGCCGCTGGTTTCTCTCACCTGACTCATCTTTCGTTAAGCTATGACCTTAAAGATGGAGCTGCTCATTACAGTTTGCAAGGGACTACTCAGTTGGAGAACGTGACTGTATTGGAGCTCGGATGGACTGTGATCAACGATGTTTTCTCAATCTGGGTCGAGGAGTTGCTGAGAAGATGTCCGAATCTGAAGAAGCTGATCATTTATGGGGTTGTCTCAGAAACCAAAACACAAGGAGATTGTCAAATTCTGGCGACATTCACATGGTCCATTGTTCAACTCATGAGGAAATATATACATGTTGAGGTACAATTTGAGTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

419

Amino Acids

47.73

Weight (kDa)

5.06

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	2 - 38	2.9e-08	F-box-like
LRR_At5g56370	PF24758	126 - 225	4.8e-11	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67190 AT1G67190
fragaria_vesca	FvH4_6g18580
malus_domestica	MD14G1022200.v1.1
prunus_persica	Prupe.6G129400_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1
pyrus_communis	pycom12g02320 pycom14g02120
rosa_chinensis	RchiOBHm_Chr3g0473131
rosa_laevigata	RLG00000024025
rosa_multiflora	Rmu_sc0016115.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408290
rosa_rugosa	Rorug03G0131900
rosa_samantha	Rh3AG183300 Rh3BG209700 Rh3CG206800 Rh3DG206700
rosa_wichuraiana	Rw0G008090 Rw0G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	194, 327
Acc16I	TGCGCA	1 cut(s)	573
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	3 cut(s)	141, 313, 939
AcoI	YGGCCR	2 cut(s)	149, 830
AcsI	RAATTY	1 cut(s)	1179
AcuI	CTGAAG	3 cut(s)	60, 626, 1142
AfaI	GTAC	1 cut(s)	1242
AfiI	CCNNNNNNNGG	2 cut(s)	147, 217
AflIII	ACRYGT	2 cut(s)	83, 1231
AjiI	CACGTC	1 cut(s)	44
Alw21I	GWGCWC	2 cut(s)	58, 1053
Alw26I	GTCTC	7 cut(s)	50, 156, 297, 462, 554, 773, 1153
Ama87I	CYCGRG	2 cut(s)	551, 695
AoxI	GGCC	2 cut(s)	149, 830
ApeKI	GCWGC	3 cut(s)	223, 269, 995
ApoI	RAATTY	1 cut(s)	1179
ArsI	GACNNNNNNTTYG	2 cut(s)	949, 981
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	1 cut(s)	1200
AsuHPI	GGTGA	1 cut(s)	944
AvaI	CYCGRG	2 cut(s)	551, 695
AvaII	GGWCC	1 cut(s)	1200
BalI	TGGCCA	1 cut(s)	832
BanII	GRGCYC	2 cut(s)	58, 1053
BauI	CACGAG	1 cut(s)	57
Bbv12I	GWGCWC	2 cut(s)	58, 1053
BbvI	GCAGC	3 cut(s)	210, 256, 982
BccI	CCATC	4 cut(s)	238, 617, 983, 1050
BceAI	ACGGC	1 cut(s)	136
BclI	TGATCA	2 cut(s)	1065, 1131
BcoDI	GTCTC	7 cut(s)	50, 156, 297, 462, 554, 773, 1153
BisI	GCNGC	4 cut(s)	224, 270, 939, 996
BlsI	GCNGC	4 cut(s)	225, 271, 940, 997
Bme18I	GGWCC	1 cut(s)	1200
BmeT110I	CYCGRG	2 cut(s)	551, 695
BmgBI	CACGTC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	1200
BmsI	GCATC	2 cut(s)	241, 559
BpuEI	CTTGAG	1 cut(s)	838
Bsa29I	ATCGAT	1 cut(s)	921
BsaBI	GATNNNNATC	2 cut(s)	498, 810
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 217
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	2 cut(s)	567, 933
Bse8I	GATNNNNATC	2 cut(s)	498, 810
BseCI	ATCGAT	1 cut(s)	921
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	4 cut(s)	253, 574, 895, 1061
BseJI	GATNNNNATC	2 cut(s)	498, 810
BseLI	CCNNNNNNNGG	2 cut(s)	147, 217
BseMI	GCAATG	2 cut(s)	567, 933
BseMII	CTCAG	4 cut(s)	458, 1037, 1094, 1164
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	2 cut(s)	66, 1109
BseXI	GCAGC	3 cut(s)	210, 256, 982
BshFI	GGCC	2 cut(s)	151, 832
BshVI	ATCGAT	1 cut(s)	921
BsiHKAI	GWGCWC	2 cut(s)	58, 1053
BsiHKCI	CYCGRG	2 cut(s)	551, 695
BslFI	GGGAC	2 cut(s)	736, 1030
BslI	CCNNNNNNNGG	2 cut(s)	147, 217
BsmAI	GTCTC	7 cut(s)	50, 156, 297, 462, 554, 773, 1153
BsmBI	CGTCTC	1 cut(s)	50
BsmFI	GGGAC	2 cut(s)	736, 1030
BsnI	GGCC	2 cut(s)	151, 832
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	2 cut(s)	551, 695
Bsp1286I	GDGCHC	2 cut(s)	58, 1053
Bsp143I	GATC	4 cut(s)	525, 849, 1065, 1131
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	141, 313, 939
BspANI	GGCC	2 cut(s)	151, 832
BspCNI	CTCAG	4 cut(s)	459, 1036, 1095, 1163
BspDI	ATCGAT	1 cut(s)	921
BspHI	TCATGA	1 cut(s)	1215
BspTNI	GGTCTC	1 cut(s)	156
BsrDI	GCAATG	2 cut(s)	567, 933
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	4 cut(s)	525, 849, 1065, 1131
BssNAI	GTATAC	1 cut(s)	297
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	216
Bst1107I	GTATAC	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	57
Bst4CI	ACNGT	5 cut(s)	277, 689, 1007, 1042, 1063
Bst6I	CTCTTC	1 cut(s)	602
BstDEI	CTNAG	5 cut(s)	467, 509, 1023, 1103, 1150
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	4 cut(s)	253, 574, 895, 1061
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	4 cut(s)	528, 852, 1068, 1134
BstMAI	GTCTC	7 cut(s)	50, 156, 297, 462, 554, 773, 1153
BstMBI	GATC	4 cut(s)	525, 849, 1065, 1131
BstMWI	GCNNNNNNNGC	2 cut(s)	706, 739
BstNSI	RCATGY	2 cut(s)	87, 1235
BstV1I	GCAGC	3 cut(s)	210, 256, 982
BstZ17I	GTATAC	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	921
BsuRI	GGCC	2 cut(s)	151, 832
BsuTUI	ATCGAT	1 cut(s)	921
BtgI	CCRYGG	1 cut(s)	216
BtrI	CACGTC	1 cut(s)	44
BtsCI	GGATG	4 cut(s)	253, 574, 895, 1061
BtsIMutI	CAGTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	1215
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	1 cut(s)	1200
ClaI	ATCGAT	1 cut(s)	921
CseI	GACGC	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	1241
CviAII	CATG	6 cut(s)	84, 217, 775, 1197, 1216, 1232
CviQI	GTAC	1 cut(s)	1241
DdeI	CTNAG	5 cut(s)	467, 509, 1023, 1103, 1150
DpnI	GATC	4 cut(s)	527, 851, 1067, 1133
DpnII	GATC	4 cut(s)	525, 849, 1065, 1131
EaeI	YGGCCR	2 cut(s)	149, 830
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
Ecl136II	GAGCTC	2 cut(s)	56, 1051
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	58, 1053
Eco31I	GGTCTC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	772
Eco47I	GGWCC	1 cut(s)	1200
Eco53kI	GAGCTC	2 cut(s)	56, 1051
Eco57I	CTGAAG	3 cut(s)	60, 626, 1142
Eco88I	CYCGRG	2 cut(s)	551, 695
EcoICRI	GAGCTC	2 cut(s)	56, 1051
EcoRV	GATATC	1 cut(s)	772
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	2 cut(s)	58, 1053
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	50
FaeI	CATG	6 cut(s)	87, 220, 778, 1200, 1219, 1235
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	2 cut(s)	736, 1030
FatI	CATG	6 cut(s)	83, 216, 774, 1196, 1215, 1231
FauNDI	CATATG	1 cut(s)	678
FbaI	TGATCA	2 cut(s)	1065, 1131
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	4 cut(s)	224, 270, 939, 996
FokI	GGATG	4 cut(s)	260, 581, 902, 1068
FriOI	GRGCYC	2 cut(s)	58, 1053
Fsp4HI	GCNGC	4 cut(s)	224, 270, 939, 996
FspI	TGCGCA	1 cut(s)	573
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	4 cut(s)	224, 270, 939, 996
HaeIII	GGCC	2 cut(s)	151, 832
HgaI	GACGC	1 cut(s)	610
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	6 cut(s)	87, 220, 778, 1200, 1219, 1235
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	4 cut(s)	102, 380, 387, 740
HinfI	GANTC	8 cut(s)	175, 187, 340, 499, 547, 929, 958, 1117
HpaI	GTTAAC	1 cut(s)	352
HphI	GGTGA	1 cut(s)	944
Hpy166II	GTNNAC	2 cut(s)	297, 352
Hpy8I	GTNNAC	2 cut(s)	297, 352
Hpy99I	CGWCG	1 cut(s)	604
HpyCH4III	ACNGT	5 cut(s)	277, 689, 1007, 1042, 1063
HpyCH4IV	ACGT	2 cut(s)	43, 1035
HpyCH4V	TGCA	4 cut(s)	226, 560, 676, 1012
HpyF10VI	GCNNNNNNNGC	2 cut(s)	706, 739
HpyF3I	CTNAG	5 cut(s)	467, 509, 1023, 1103, 1150
HpySE526I	ACGT	2 cut(s)	43, 1035
Hsp92II	CATG	6 cut(s)	87, 220, 778, 1200, 1219, 1235
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	2 cut(s)	1065, 1131
KspAI	GTTAAC	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	525, 849, 1065, 1131
LmnI	GCTCC	3 cut(s)	53, 992, 1048
LpnPI	CCDG	7 cut(s)	27, 319, 402, 927, 968, 1072, 1169
Lsp1109I	GCAGC	3 cut(s)	210, 256, 982
LweI	GCATC	2 cut(s)	241, 559
MaeII	ACGT	2 cut(s)	43, 1035
MaeIII	GTNAC	4 cut(s)	462, 577, 858, 1036
MalI	GATC	4 cut(s)	527, 851, 1067, 1133
MboI	GATC	4 cut(s)	525, 849, 1065, 1131
MboII	GAAGA	4 cut(s)	110, 619, 1119, 1135
MfeI	CAATTG	1 cut(s)	582
MhlI	GDGCHC	2 cut(s)	58, 1053
MlsI	TGGCCA	1 cut(s)	832
MluCI	AATT	5 cut(s)	136, 406, 582, 1179, 1244
MluNI	TGGCCA	1 cut(s)	832
MlyI	GAGTC	4 cut(s)	334, 556, 938, 952
MmeI	TCCRAC	2 cut(s)	546, 1008
MnlI	CCTC	7 cut(s)	44, 366, 432, 646, 1087, 1212, 1231
Mox20I	TGGCCA	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	832
MseI	TTAA	4 cut(s)	351, 738, 971, 984
MslI	CAYNNNNRTG	1 cut(s)	1195
Msp20I	TGGCCA	1 cut(s)	832
MspA1I	CMGCKG	2 cut(s)	143, 941
MunI	CAATTG	1 cut(s)	582
MwoI	GCNNNNNNNGC	2 cut(s)	706, 739
NcoI	CCATGG	1 cut(s)	216
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	4 cut(s)	525, 849, 1065, 1131
NlaIII	CATG	6 cut(s)	87, 220, 778, 1200, 1219, 1235
NmuCI	GTSAC	4 cut(s)	462, 577, 858, 1036
NsbI	TGCGCA	1 cut(s)	573
NspI	RCATGY	2 cut(s)	87, 1235
PaeR7I	CTCGAG	2 cut(s)	551, 695
PagI	TCATGA	1 cut(s)	1215
PciI	ACATGT	2 cut(s)	83, 1231
PfeI	GAWTC	4 cut(s)	175, 187, 499, 1117
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	225, 271, 940, 997
PleI	GAGTC	4 cut(s)	334, 555, 937, 952
PpsI	GAGTC	4 cut(s)	334, 555, 937, 952
PscI	ACATGT	2 cut(s)	83, 1231
PsiI	TTATAA	2 cut(s)	194, 327
Psp124BI	GAGCTC	2 cut(s)	58, 1053
PspPI	GGNCC	1 cut(s)	1200
RsaI	GTAC	1 cut(s)	1242
RsaNI	GTAC	1 cut(s)	1241
RseI	CAYNNNNRTG	1 cut(s)	1195
SacI	GAGCTC	2 cut(s)	58, 1053
SaqAI	TTAA	4 cut(s)	351, 738, 971, 984
SatI	GCNGC	4 cut(s)	224, 270, 939, 996
Sau3AI	GATC	4 cut(s)	525, 849, 1065, 1131
Sau96I	GGNCC	1 cut(s)	1200
SchI	GAGTC	4 cut(s)	334, 556, 938, 952
SduI	GDGCHC	2 cut(s)	58, 1053
SfaNI	GCATC	2 cut(s)	241, 559
Sfr274I	CTCGAG	2 cut(s)	551, 695
SinI	GGWCC	1 cut(s)	1200
SlaI	CTCGAG	2 cut(s)	551, 695
SmiMI	CAYNNNNRTG	1 cut(s)	1195
SmlI	CTYRAG	3 cut(s)	551, 695, 853
SmoI	CTYRAG	3 cut(s)	551, 695, 853
Sse9I	AATT	5 cut(s)	136, 406, 582, 1179, 1244
SsiI	CCGC	3 cut(s)	141, 313, 939
SstI	GAGCTC	2 cut(s)	58, 1053
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	5 cut(s)	277, 689, 1007, 1042, 1063
TaiI	ACGT	2 cut(s)	46, 1038
TaqI	TCGA	7 cut(s)	160, 528, 552, 621, 696, 921, 1092
TasI	AATT	5 cut(s)	136, 406, 582, 1179, 1244
TauI	GCSGC	1 cut(s)	941
TfiI	GAWTC	4 cut(s)	175, 187, 499, 1117
Tru1I	TTAA	4 cut(s)	351, 738, 971, 984
Tru9I	TTAA	4 cut(s)	351, 738, 971, 984
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	4 cut(s)	462, 577, 858, 1036
TseI	GCWGC	3 cut(s)	223, 269, 995
Tsp45I	GTSAC	4 cut(s)	462, 577, 858, 1036
TspDTI	ATGAA	2 cut(s)	695, 927
TspRI	CASTG	1 cut(s)	471
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	1200
XapI	RAATTY	1 cut(s)	1179
XceI	RCATGY	2 cut(s)	87, 1235
XhoI	CTCGAG	2 cut(s)	551, 695
XmiI	GTMKAC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.