Prupe.6G129400_v2.0.a1

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007912
Physical Location & Seq
Reverse (-)
10031979 .. 10033264
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G129400.1

Sequence Viewer

Length: 1146 bp
ATGGAGCACCTGCCTGTTGAGGTCATTGGTAACATACTGTCCCGGCTCAGTGCTGCGCGAGATGTGGTGGTAGCCTCCACAACATGTCAGAAATGGCGAGAAGCTTGCCGCAAACACCTTCACACGCTTTCATTCAATTCCAATGATTGGCCTGTGTATCGGGATTTAACAACTAGTCAATTGGAAATCTTAATAACGCAAACAATTTTTCAAAGTACTGGATTACAAGTACTATCAATCTTAATGGATGATGTTGAAGAGTTCTTGGGTTCCACTGTTATTGCATGGCTCATGTACACCAGAGAAACGCTTCGGCAATTGTTTTATAATGTTCGGACTGCTCCAAATGTAAACATTCTAGAAATTTGTGGGAGGCAAAAGTTGGAAATGTTGGTCTTGGGCCATAATTCTGTCACAGGAGTTGAACCCAAATTTCAGAGATTTCCTTGTTTGAAATCTCTTTCTTTGAGGTACGTTAGTATTTCAGCATTGGATCTTAGCCTTTTGCTAAGTGCATGCCCAAAGATTGAAACCTTAGAACTTGTCAACCCAGAGATAGCAATGTCAGATGCACAAGTGACTGTTGAGCTGAGCAGTCCAACATTAAAGAGCATTTATGCAGAAAGAATCAGTTTGGAAAAGTTTATATTGGAGGCTGATAGCATTCAGCGTTTGCACCTGAAAGCTTGTGCTCTTGAGGTCTTTGAACTCATTGGAAAGGGGACCTTAAAGCATTTCAAGATTGATGATGTTAGTGTCTTTCATCTTGATATCGGTGATAATGTTGAAAACCTTGAGATTGATGAGATTGTGGATTTAGAAACGATTGCTGTCTGTTTACCACAGCTGAGTCATTTGTCATTGAGTTATGATTTAAGAGATGGAGTGCTTCACTATGGTTTGCAAGGATCTTCTCATCTGGAGAATGTTACTTTCTTGGAGCTTGGGTGGACTCTAATCAATGATATCTTCATACATTTTGTTGAAGGGCTGTTGAAACGATGCCCAAGTCTTAAGAAATTGGTTATTCATGGGGTTGTTTCAGAAGCCAAAACCCATGAAGAATGCCAAACGTTAGCAAATTTCACCTCATCAAACCTCATGAGACAATACATGTATGTAGAGGTGCAGTTTGAGTATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box-like

Protein Analysis

382

Amino Acids

43.21

Weight (kDa)

5.22

Isoelectric Point (pI)

41.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 327
AarI CACCTGC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 18
AccB7I CCANNNNNTGG 1 cut(s) 147
AccII CGCG 1 cut(s) 58
AciI CCGC 1 cut(s) 109
AclI AACGTT 1 cut(s) 1073
AclWI GGATC 2 cut(s) 501, 916
AcsI RAATTY 3 cut(s) 363, 431, 1081
AfaI GTAC 4 cut(s) 217, 231, 296, 473
AfiI CCNNNNNNNGG 1 cut(s) 147
AflII CTTAAG 1 cut(s) 1013
AflIII ACRYGT 2 cut(s) 83, 1113
AhlI ACTAGT 1 cut(s) 173
AluBI AGCT 5 cut(s) 104, 589, 686, 847, 943
AluI AGCT 5 cut(s) 104, 589, 686, 847, 943
Alw21I GWGCWC 2 cut(s) 9, 694
Alw26I GTCTC 1 cut(s) 1099
AlwI GGATC 2 cut(s) 501, 916
AoxI GGCC 2 cut(s) 149, 400
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 3 cut(s) 363, 431, 1081
Asp700I GAANNNNTTC 1 cut(s) 309
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 400, 723
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 788, 1078
AvaII GGWCC 1 cut(s) 723
BaeI ACNNNNGTAYC 2 cut(s) 463, 496
Bbv12I GWGCWC 2 cut(s) 9, 694
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 875
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 1099
BcuI ACTAGT 1 cut(s) 173
BfaI CTAG 2 cut(s) 174, 359
BfrI CTTAAG 1 cut(s) 1013
BfuAI ACCTGC 1 cut(s) 18
BisI GCNGC 2 cut(s) 54, 109
BlpI GCTNAGC 1 cut(s) 590
BlsI GCNGC 2 cut(s) 55, 110
BmcAI AGTACT 2 cut(s) 217, 231
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 723
BmgT120I GGNCC 2 cut(s) 400, 723
BmiI GGNNCC 2 cut(s) 271, 724
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 2 cut(s) 559, 992
BpmI CTGGAG 1 cut(s) 941
Bpu1102I GCTNAGC 1 cut(s) 590
BpuEI CTTGAG 2 cut(s) 716, 815
BpuMI CCSGG 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 932, 962
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 567
BseGI GGATG 1 cut(s) 253
BseLI CCNNNNNNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 61, 581, 839
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 40
Bsh1236I CGCG 1 cut(s) 58
BshFI GGCC 2 cut(s) 151, 402
BsiHKAI GWGCWC 2 cut(s) 9, 694
BsiSI CCGG 1 cut(s) 43
BslFI GGGAC 2 cut(s) 25, 736
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 1099
BsmFI GGGAC 2 cut(s) 25, 736
BsmI GAATGC 2 cut(s) 663, 1070
BsnI GGCC 2 cut(s) 151, 402
Bsp1286I GDGCHC 2 cut(s) 9, 694
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 2 cut(s) 493, 908
Bsp1720I GCTNAGC 1 cut(s) 590
BspACI CCGC 1 cut(s) 109
BspANI GGCC 2 cut(s) 151, 402
BspCNI CTCAG 3 cut(s) 60, 582, 840
BspFNI CGCG 1 cut(s) 58
BspHI TCATGA 1 cut(s) 1101
BspLI GGNNCC 2 cut(s) 271, 724
BspMI ACCTGC 1 cut(s) 18
BspPI GGATC 2 cut(s) 501, 916
BspTI CTTAAG 1 cut(s) 1013
BsrDI GCAATG 1 cut(s) 567
BsrGI TGTACA 1 cut(s) 294
BsrI ACTGG 1 cut(s) 223
BssMI GATC 2 cut(s) 493, 908
Bst4CI ACNGT 3 cut(s) 39, 277, 583
Bst6I CTCTTC 1 cut(s) 252
BstAFI CTTAAG 1 cut(s) 1013
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 106, 517
BstDEI CTNAG 6 cut(s) 47, 497, 509, 535, 590, 848
BstF5I GGATG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 58
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 496, 911
BstMAI GTCTC 1 cut(s) 1099
BstMBI GATC 2 cut(s) 493, 908
BstNSI RCATGY 3 cut(s) 87, 519, 1117
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 1 cut(s) 58
BstV1I GCAGC 1 cut(s) 40
BstX2I RGATCY 2 cut(s) 493, 908
BstYI RGATCY 2 cut(s) 493, 908
BsuRI GGCC 2 cut(s) 151, 402
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 2 cut(s) 55, 273
BveI ACCTGC 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 106, 517
CciI TCATGA 1 cut(s) 1101
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 400, 723
Csp6I GTAC 4 cut(s) 216, 230, 295, 472
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 8 cut(s) 84, 285, 292, 516, 1031, 1058, 1102, 1114
CviQI GTAC 4 cut(s) 216, 230, 295, 472
DdeI CTNAG 6 cut(s) 47, 497, 509, 535, 590, 848
DpnI GATC 2 cut(s) 495, 910
DpnII GATC 2 cut(s) 493, 908
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco32I GATATC 2 cut(s) 772, 967
Eco47I GGWCC 1 cut(s) 723
EcoO109I RGGNCCY 1 cut(s) 723
EcoRV GATATC 2 cut(s) 772, 967
FaeI CATG 8 cut(s) 87, 288, 295, 519, 1034, 1061, 1105, 1117
FalI AAGNNNNNCTT 2 cut(s) 710, 742
FaqI GGGAC 2 cut(s) 25, 736
FatI CATG 8 cut(s) 83, 284, 291, 515, 1030, 1057, 1101, 1113
Fnu4HI GCNGC 2 cut(s) 54, 109
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 2 cut(s) 54, 109
FspBI CTAG 2 cut(s) 174, 359
GlaI GCGC 1 cut(s) 57
GluI GCNGC 2 cut(s) 54, 109
GsuI CTGGAG 1 cut(s) 941
HaeIII GGCC 2 cut(s) 151, 402
HapII CCGG 1 cut(s) 43
HhaI GCGC 1 cut(s) 58
Hin1II CATG 8 cut(s) 87, 288, 295, 519, 1034, 1061, 1105, 1117
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 2 cut(s) 102, 684
HinfI GANTC 3 cut(s) 627, 850, 952
HpaII CCGG 1 cut(s) 43
HphI GGTGA 2 cut(s) 788, 1078
Hpy166II GTNNAC 5 cut(s) 297, 352, 547, 839, 951
Hpy188I TCNGA 5 cut(s) 90, 336, 438, 568, 1045
Hpy188III TCNNGA 7 cut(s) 161, 359, 695, 739, 767, 920, 1102
Hpy8I GTNNAC 5 cut(s) 297, 352, 547, 839, 951
HpyAV CCTTC 2 cut(s) 128, 980
HpyCH4III ACNGT 3 cut(s) 39, 277, 583
HpyCH4IV ACGT 2 cut(s) 474, 1073
HpyCH4V TGCA 7 cut(s) 284, 515, 572, 620, 676, 904, 1129
HpyF3I CTNAG 6 cut(s) 47, 497, 509, 535, 590, 848
HpySE526I ACGT 2 cut(s) 474, 1073
Hsp92II CATG 8 cut(s) 87, 288, 295, 519, 1034, 1061, 1105, 1117
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 493, 908
LmnI GCTCC 3 cut(s) 4, 346, 940
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 559, 992
MaeI CTAG 2 cut(s) 174, 359
MaeII ACGT 2 cut(s) 474, 1073
MaeIII GTNAC 4 cut(s) 29, 412, 577, 928
MalI GATC 2 cut(s) 495, 910
MboI GATC 2 cut(s) 493, 908
MboII GAAGA 4 cut(s) 269, 903, 961, 1073
MfeI CAATTG 2 cut(s) 179, 317
MflI RGATCY 2 cut(s) 493, 908
MhlI GDGCHC 2 cut(s) 9, 694
MluCI AATT 9 cut(s) 136, 179, 204, 317, 363, 406, 431, 1019, 1081
MlyI GAGTC 2 cut(s) 859, 946
MmeI TCCRAC 2 cut(s) 363, 623
MnlI CCTC 9 cut(s) 13, 85, 366, 462, 646, 691, 1099, 1109, 1117
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 7 cut(s) 167, 191, 242, 605, 728, 875, 1014
MspA1I CMGCKG 1 cut(s) 847
MspCI CTTAAG 1 cut(s) 1013
MspI CCGG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 43
MunI CAATTG 2 cut(s) 179, 317
Mva1269I GAATGC 2 cut(s) 663, 1070
MvnI CGCG 1 cut(s) 58
NciI CCSGG 1 cut(s) 43
NdeII GATC 2 cut(s) 493, 908
NlaIII CATG 8 cut(s) 87, 288, 295, 519, 1034, 1061, 1105, 1117
NlaIV GGNNCC 2 cut(s) 271, 724
NmuCI GTSAC 2 cut(s) 412, 577
NspI RCATGY 3 cut(s) 87, 519, 1117
PaeI GCATGC 1 cut(s) 519
PagI TCATGA 1 cut(s) 1101
PaqCI CACCTGC 1 cut(s) 18
PciI ACATGT 2 cut(s) 83, 1113
PctI GAATGC 2 cut(s) 663, 1070
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 627
PflMI CCANNNNNTGG 1 cut(s) 147
PkrI GCNGC 2 cut(s) 55, 110
PleI GAGTC 2 cut(s) 858, 946
PpsI GAGTC 2 cut(s) 858, 946
PpuMI RGGWCCY 1 cut(s) 723
PscI ACATGT 2 cut(s) 83, 1113
PsiI TTATAA 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 1073
Psp5II RGGWCCY 1 cut(s) 723
PspN4I GGNNCC 2 cut(s) 271, 724
PspPI GGNCC 2 cut(s) 400, 723
PspPPI RGGWCCY 1 cut(s) 723
PsuI RGATCY 2 cut(s) 493, 908
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 4 cut(s) 217, 231, 296, 473
RsaNI GTAC 4 cut(s) 216, 230, 295, 472
SaqAI TTAA 7 cut(s) 167, 191, 242, 605, 728, 875, 1014
SatI GCNGC 2 cut(s) 54, 109
Sau3AI GATC 2 cut(s) 493, 908
Sau96I GGNCC 2 cut(s) 400, 723
ScaI AGTACT 2 cut(s) 217, 231
SchI GAGTC 2 cut(s) 859, 946
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 2 cut(s) 9, 694
SfaNI GCATC 2 cut(s) 559, 992
SinI GGWCC 1 cut(s) 723
SmlI CTYRAG 3 cut(s) 695, 794, 1013
SmoI CTYRAG 3 cut(s) 695, 794, 1013
SpeI ACTAGT 1 cut(s) 173
SphI GCATGC 1 cut(s) 519
Sse9I AATT 9 cut(s) 136, 179, 204, 317, 363, 406, 431, 1019, 1081
SsiI CCGC 1 cut(s) 109
SspMI CTAG 2 cut(s) 174, 359
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 39, 277, 583
TaiI ACGT 2 cut(s) 477, 1076
TasI AATT 9 cut(s) 136, 179, 204, 317, 363, 406, 431, 1019, 1081
TatI WGTACW 3 cut(s) 215, 229, 294
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 627
Tru1I TTAA 7 cut(s) 167, 191, 242, 605, 728, 875, 1014
Tru9I TTAA 7 cut(s) 167, 191, 242, 605, 728, 875, 1014
TscAI CASTG 2 cut(s) 55, 280
TseFI GTSAC 2 cut(s) 412, 577
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 412, 577
TspDTI ATGAA 5 cut(s) 120, 752, 961, 1019, 1074
TspRI CASTG 2 cut(s) 55, 280
Van91I CCANNNNNTGG 1 cut(s) 147
Vha464I CTTAAG 1 cut(s) 1013
VpaK11BI GGWCC 1 cut(s) 723
XapI RAATTY 3 cut(s) 363, 431, 1081
XbaI TCTAGA 1 cut(s) 358
XceI RCATGY 3 cut(s) 87, 519, 1117
XmnI GAANNNNTTC 1 cut(s) 309
XspI CTAG 2 cut(s) 174, 359
ZrmI AGTACT 2 cut(s) 217, 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.