Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0007912

Physical Location & Seq

Genomic Coordinates Forward (+)

30957984 .. 30959234

Gene Structure 1251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024025

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGCACCTTCCGGTGGAAGTCATAGGTAACATACTATCGCGGCTTAGAGCTGCCCGAGATGTGGTTATTGCATCCGCAACTTGCAAGAAGTGGAGAGAGGCTTGGCGGAATCACCTCCACACTCTGTCTTTCAATTCCAGTGATTGGTCTGTCTATCATGATCTCACAACGAGTAGATTGGAAATTCTGATAACTCAAACCATATTCCAAACCACTGCGTTGCAGTGTTTATCAATTTTTATGGATGAAGTTGATGAGTTCTCAGCTGCCCCAGTGATTGCTTGGCTCATGTATACGCGGGACACCTTGCGACAACTGCATTATAATGTGCGGACAACCCCAAATGTTAATATCATTGAGAAATGCAGTCGGCAGAAGCTTGAAGTCTTGGCCTTGGCTCATAATTCTGTAACAGGTGTTGAACCTAGTTATCAGAAGTTTCCGTGCTTGAAGTCACTTTCCTTGAGTTATGTCAGCATCTCAGCATTGGATTTGAGCCTTTTACTCACTGCATGTCCAAAACTCACCAGTTTGTCTCTTATTAATCCTGATATAGCAATGTCAGATGCACAGGCAACAATGAAACTTAGCAGTGCATCATTGAAAGATATCTATGTTGAAGCAGTCAGTTTGGATAATTTCATATTGGAGGCTGATACCCTTGAGAATCTGCACTTGAAAGATTGTACCTTGGAGCTTTTTGAGCTTATTGGTAAGGGGTCATTGAAGGAATTGAAGATTGATGATGTTAGTGTGCTCCATCTCGATATTGGTGAGAACACTGAGAATCTTCAGATTGTGGATGTCAGCAGCTTCACAATCATGTGGCCGAAGTTCTATAACATGATCTCTAAGTCATCAAATTTAAGGAGGCTTCGGTTATGGGGTGTTGTGTTTGATGATGAGGATGAGGTTGTGGATTTGGAGAATGTTTCTGTTTGCTTCCCACTGTTAAGCCACCTATCCCTAAGTTATGATTTAAGAGATGTTTGTGGCTTGCAGGGGACATCTCGTTTGGAGAATGTGGTTGTGTTAGAACTTGGATGGACTATTATAAGTGAGCTCTTCTCTGAATGGGTAGCAGGACTTATAGAGAGATGCCCTAAGTTGAGGAAGTTGGTCATTTATGGGGTTGTTTCAGAAGCCAAATCCCATGAAGAATGCCAAACTTTGGCAAACTTCACTTCTGCCATTGTCCGGCTGATGAGAAAATATATGCATGTGGAGATTCAATTTGAATATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

417

Amino Acids

47.23

Weight (kDa)

5.19

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	2 - 36	1.4e-07	F-box-like
LRR_At5g56370	PF24758	126 - 229	6.3e-11	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67190 AT1G67190
fragaria_vesca	FvH4_6g18580
malus_domestica	MD14G1022200.v1.1
prunus_persica	Prupe.6G129400_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1
pyrus_communis	pycom12g02320 pycom14g02120
rosa_chinensis	RchiOBHm_Chr3g0473131
rosa_laevigata	RLG00000024025
rosa_multiflora	Rmu_sc0016115.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408290
rosa_rugosa	Rorug03G0131900
rosa_samantha	Rh3AG183300 Rh3BG209700 Rh3CG206800 Rh3DG206700
rosa_wichuraiana	Rw0G008090 Rw0G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	327, 1058
AccB7I	CCANNNNNTGG	2 cut(s)	147, 1174
AccI	GTMKAC	1 cut(s)	296
AccII	CGCG	2 cut(s)	43, 301
AciI	CCGC	5 cut(s)	43, 78, 109, 301, 334
AcoI	YGGCCR	1 cut(s)	830
AcsI	RAATTY	2 cut(s)	186, 865
AcuI	CTGAAG	1 cut(s)	779
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	5 cut(s)	16, 64, 147, 1174, 1200
AluBI	AGCT	7 cut(s)	53, 269, 382, 700, 709, 816, 1066
AluI	AGCT	7 cut(s)	53, 269, 382, 700, 709, 816, 1066
Alw21I	GWGCWC	3 cut(s)	9, 762, 1068
Alw26I	GTCTC	1 cut(s)	543
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	393, 830
ApeKI	GCWGC	3 cut(s)	53, 269, 813
ApoI	RAATTY	2 cut(s)	186, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	1000, 1032
AseI	ATTAAT	1 cut(s)	546
AsuHPI	GGTGA	3 cut(s)	107, 520, 788
AvaI	CYCGRG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	1068
Bbv12I	GWGCWC	3 cut(s)	9, 762, 1068
BbvI	GCAGC	3 cut(s)	40, 256, 825
BccI	CCATC	2 cut(s)	771, 1041
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	1 cut(s)	429
BisI	GCNGC	4 cut(s)	44, 54, 270, 814
BlsI	GCNGC	4 cut(s)	45, 55, 271, 815
BmeT110I	CYCGRG	1 cut(s)	57
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	5 cut(s)	83, 489, 559, 608, 1091
BmuI	ACTGGG	1 cut(s)	269
BplI	GAGNNNNNCTC	2 cut(s)	1055, 1087
BpuEI	CTTGAG	2 cut(s)	487, 686
BsaJI	CCNNGG	2 cut(s)	396, 693
BsaWI	WCCGGW	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	5 cut(s)	16, 64, 147, 1174, 1200
Bse1I	ACTGG	3 cut(s)	141, 275, 531
Bse3DI	GCAATG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	396, 693
BseGI	GGATG	5 cut(s)	74, 253, 811, 916, 1052
BseLI	CCNNNNNNNGG	5 cut(s)	16, 64, 147, 1174, 1200
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	279, 498, 777
BseNI	ACTGG	3 cut(s)	141, 275, 531
BseXI	GCAGC	3 cut(s)	40, 256, 825
BsgI	GTGCAG	1 cut(s)	659
Bsh1236I	CGCG	2 cut(s)	43, 301
BshFI	GGCC	2 cut(s)	395, 832
BsiHKAI	GWGCWC	3 cut(s)	9, 762, 1068
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	14, 1201
BslFI	GGGAC	2 cut(s)	317, 1021
BslI	CCNNNNNNNGG	5 cut(s)	16, 64, 147, 1174, 1200
BsmAI	GTCTC	1 cut(s)	543
BsmFI	GGGAC	2 cut(s)	317, 1021
BsmI	GAATGC	1 cut(s)	1169
BsnI	GGCC	2 cut(s)	395, 832
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	9, 762, 1068
Bsp143I	GATC	2 cut(s)	163, 849
BspACI	CCGC	5 cut(s)	43, 78, 109, 301, 334
BspANI	GGCC	2 cut(s)	395, 832
BspCNI	CTCAG	3 cut(s)	278, 497, 778
BspFNI	CGCG	2 cut(s)	43, 301
BspHI	TCATGA	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	1073
BsrDI	GCAATG	1 cut(s)	567
BsrI	ACTGG	3 cut(s)	141, 275, 531
BssECI	CCNNGG	2 cut(s)	396, 693
BssMI	GATC	2 cut(s)	163, 849
BssNAI	GTATAC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	396, 693
Bst1107I	GTATAC	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	954
Bst6I	CTCTTC	1 cut(s)	1073
BstC8I	GCNNGC	1 cut(s)	1001
BstDEI	CTNAG	8 cut(s)	47, 265, 484, 590, 786, 855, 971, 1107
BstF5I	GGATG	5 cut(s)	74, 253, 811, 916, 1052
BstFNI	CGCG	2 cut(s)	43, 301
BstKTI	GATC	2 cut(s)	166, 852
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	2 cut(s)	163, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 706
BstNSI	RCATGY	2 cut(s)	519, 1226
BstUI	CGCG	2 cut(s)	43, 301
BstV1I	GCAGC	3 cut(s)	40, 256, 825
BstZ17I	GTATAC	1 cut(s)	297
BsuRI	GGCC	2 cut(s)	395, 832
BtsCI	GGATG	5 cut(s)	74, 253, 811, 916, 1052
BtsI	GCAGTG	4 cut(s)	216, 233, 510, 601
BtsIMutI	CAGTG	8 cut(s)	148, 216, 233, 282, 510, 601, 783, 950
Cac8I	GCNNGC	1 cut(s)	1001
CciI	TCATGA	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	690
CviAII	CATG	7 cut(s)	161, 292, 516, 826, 847, 1157, 1223
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	8 cut(s)	47, 265, 484, 590, 786, 855, 971, 1107
DpnI	GATC	2 cut(s)	165, 851
DpnII	GATC	2 cut(s)	163, 849
EaeI	YGGCCR	1 cut(s)	830
Eam1104I	CTCTTC	1 cut(s)	1073
EarI	CTCTTC	1 cut(s)	1073
EciI	GGCGGA	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	1066
Eco130I	CCWWGG	2 cut(s)	396, 693
Eco24I	GRGCYC	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	613
Eco53kI	GAGCTC	1 cut(s)	1066
Eco57I	CTGAAG	1 cut(s)	779
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	1066
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	396, 693
EcoT22I	ATGCAT	1 cut(s)	1224
EcoT38I	GRGCYC	1 cut(s)	1068
ErhI	CCWWGG	2 cut(s)	396, 693
FaeI	CATG	7 cut(s)	164, 295, 519, 829, 850, 1160, 1226
FaqI	GGGAC	2 cut(s)	317, 1021
FatI	CATG	7 cut(s)	160, 291, 515, 825, 846, 1156, 1222
FauI	CCCGC	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	4 cut(s)	44, 54, 270, 814
FokI	GGATG	5 cut(s)	61, 260, 818, 923, 1059
FriOI	GRGCYC	1 cut(s)	1068
Fsp4HI	GCNGC	4 cut(s)	44, 54, 270, 814
FspBI	CTAG	1 cut(s)	429
GluI	GCNGC	4 cut(s)	44, 54, 270, 814
HaeIII	GGCC	2 cut(s)	395, 832
HapII	CCGG	2 cut(s)	14, 1201
Hin1II	CATG	7 cut(s)	164, 295, 519, 829, 850, 1160, 1226
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	4 cut(s)	112, 670, 790, 1231
HpaII	CCGG	2 cut(s)	14, 1201
HphI	GGTGA	3 cut(s)	107, 520, 788
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	6 cut(s)	192, 438, 568, 798, 1075, 1144
Hpy188III	TCNNGA	3 cut(s)	161, 551, 767
Hpy8I	GTNNAC	1 cut(s)	297
HpyAV	CCTTC	2 cut(s)	20, 724
HpyCH4III	ACNGT	1 cut(s)	954
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 706
HpyF3I	CTNAG	8 cut(s)	47, 265, 484, 590, 786, 855, 971, 1107
Hsp92II	CATG	7 cut(s)	164, 295, 519, 829, 850, 1160, 1226
Kzo9I	GATC	2 cut(s)	163, 849
LguI	GCTCTTC	1 cut(s)	1073
LmnI	GCTCC	3 cut(s)	4, 697, 765
Lsp1109I	GCAGC	3 cut(s)	40, 256, 825
LweI	GCATC	5 cut(s)	83, 489, 559, 608, 1091
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	3 cut(s)	29, 412, 456
MalI	GATC	2 cut(s)	165, 851
MboI	GATC	2 cut(s)	163, 849
MboII	GAAGA	4 cut(s)	751, 785, 1060, 1172
MhlI	GDGCHC	3 cut(s)	9, 762, 1068
MluCI	AATT	8 cut(s)	136, 186, 237, 406, 640, 734, 865, 1235
MnlI	CCTC	7 cut(s)	94, 128, 646, 867, 901, 907, 1107
Mph1103I	ATGCAT	1 cut(s)	1224
MseI	TTAA	5 cut(s)	351, 546, 869, 956, 983
MslI	CAYNNNNRTG	2 cut(s)	327, 824
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	14, 1201
Mva1269I	GAATGC	1 cut(s)	1169
MvnI	CGCG	2 cut(s)	43, 301
MwoI	GCNNNNNNNGC	2 cut(s)	319, 706
NdeII	GATC	2 cut(s)	163, 849
NlaIII	CATG	7 cut(s)	164, 295, 519, 829, 850, 1160, 1226
NmuCI	GTSAC	1 cut(s)	456
NsiI	ATGCAT	1 cut(s)	1224
NspI	RCATGY	2 cut(s)	519, 1226
PagI	TCATGA	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	1073
PctI	GAATGC	1 cut(s)	1169
PfeI	GAWTC	4 cut(s)	112, 670, 790, 1231
PflMI	CCANNNNNTGG	2 cut(s)	147, 1174
PkrI	GCNGC	4 cut(s)	45, 55, 271, 815
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	2 cut(s)	327, 1058
Psp124BI	GAGCTC	1 cut(s)	1068
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
RseI	CAYNNNNRTG	2 cut(s)	327, 824
SacI	GAGCTC	1 cut(s)	1068
SapI	GCTCTTC	1 cut(s)	1073
SaqAI	TTAA	5 cut(s)	351, 546, 869, 956, 983
SatI	GCNGC	4 cut(s)	44, 54, 270, 814
Sau3AI	GATC	2 cut(s)	163, 849
SduI	GDGCHC	3 cut(s)	9, 762, 1068
SfaNI	GCATC	5 cut(s)	83, 489, 559, 608, 1091
SmiMI	CAYNNNNRTG	2 cut(s)	327, 824
SmlI	CTYRAG	2 cut(s)	466, 665
SmoI	CTYRAG	2 cut(s)	466, 665
Sse9I	AATT	8 cut(s)	136, 186, 237, 406, 640, 734, 865, 1235
SsiI	CCGC	5 cut(s)	43, 78, 109, 301, 334
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	1 cut(s)	1068
StyI	CCWWGG	2 cut(s)	396, 693
TaaI	ACNGT	1 cut(s)	954
TaqI	TCGA	1 cut(s)	768
TasI	AATT	8 cut(s)	136, 186, 237, 406, 640, 734, 865, 1235
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	4 cut(s)	112, 670, 790, 1231
Tru1I	TTAA	5 cut(s)	351, 546, 869, 956, 983
Tru9I	TTAA	5 cut(s)	351, 546, 869, 956, 983
TscAI	CASTG	8 cut(s)	148, 223, 233, 282, 517, 601, 790, 957
TseFI	GTSAC	1 cut(s)	456
TseI	GCWGC	3 cut(s)	53, 269, 813
Tsp45I	GTSAC	1 cut(s)	456
TspDTI	ATGAA	4 cut(s)	264, 599, 634, 1173
TspGWI	ACGGA	1 cut(s)	435
TspRI	CASTG	8 cut(s)	148, 223, 233, 282, 517, 601, 790, 957
Van91I	CCANNNNNTGG	2 cut(s)	147, 1174
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	2 cut(s)	186, 865
XceI	RCATGY	2 cut(s)	519, 1226
XcmI	CCANNNNNNNNNTGG	2 cut(s)	282, 770
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	1 cut(s)	429
Zsp2I	ATGCAT	1 cut(s)	1224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.