Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007912

Physical Location & Seq

Genomic Coordinates Forward (+)

13822210 .. 13824997

Gene Structure 2788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G111200.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGCACCTTCCAGTTGAAGTCATAGGTAACATATTATCCCGGCTTAAAGCTGCCCGAGACGTGGTAATTGCATCCGCAACTTGCAAGAAATGGAGAGAGGCTTGGCGGAATCACCTCCATACTCTTTCTTTCAATTCCAACGACTGGTCTGTATATCATGATCTGGCACCAAGTAGGTTGGAAATTCTTATAACTCAAACAATATTCCAAACCACAGCATTGCAGTGTTTATCAATTTTTATGGACGATGTAGATGAATTTTCAGCTGCCCCAGTGATAGCTTGGCTCATGTATACCCGGGATACCTTGCGGCAACTACATTATAATGTGAGGACAACCCCGAATGTCAATATCATTGAGAAATGCAGTCGGCAGAAGCTTGAAGTATTGTCGTTGGCTCATAACTCTGTAACAGGTGTTGAACCCAGTTATCAGAAATTTCCATGTTTGAAGTCACTTTCCCTAAGTTATGTCAGTATATCAGCATTGGATTTGAGCCTTTTGCTCACCGCATGTCCAAAACTTCAGAATTTGACCCTTATTAATCCTGATATTGCCATGTCGGACGCACAGGCAATTATGGAACTTAACAGCTCTTCATTGAAAGATATCTATGTGGAAGCTGTCAGTTTAGACAAGTTCATGTTGGAGGCTGATAGCATTGAGAATCTGCACCTCAAAGATTGTACCCTTGAGGCTTTCGAGCTTATTGGTAAGGGTTCATTGAGGGTTCTGAAGATTGATGATGTTAGTGTCCTCCATCTAGATATTGGTGAGAACACAGAGAATCTTCAGATTGTGGATGTTAGCAGCTTTACGATTATGTGGCCAAAGTTCTATAACATGATCTCAAAATCATCAAATTTAAAGAGGCTTCGGCTCTGGGGTGTTGTATTTGATGATGAGGATGAGGTCGTGGATTTGGAGACTGTTTCTGTTTGCTTCCCTCGGTTAAGTCACCTATCACTAAGTTATGATTTAAGAGATGTCTGTGGCTTGCAGGGGACATCTCCTTTGGAGAACGTGGTTGTGTTAGAACTTGGGTGGACTATAATCAGTGACCTTTTCTCTGACTGGGTAGCCGGACTTCTAGAAAGATGCCCTAATTTGAAGAAGTTGGTTATTTGTGGCGTTGTTTCAGAAGTTAAATCCCATGAAGAATGCCAAGTTTTAGCAAGCTTCACTTCGTCCATTGTCCGACTGATGAGAAAATACATGCGTGTAGAGGTTCAGTTTGAGTATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

417

Amino Acids

47.13

Weight (kDa)

5.12

Isoelectric Point (pI)

36.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67190 AT1G67190
fragaria_vesca	FvH4_6g18580
malus_domestica	MD14G1022200.v1.1
prunus_persica	Prupe.6G129400_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1
pyrus_communis	pycom12g02320 pycom14g02120
rosa_chinensis	RchiOBHm_Chr3g0473131
rosa_laevigata	RLG00000024025
rosa_multiflora	Rmu_sc0016115.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408290
rosa_rugosa	Rorug03G0131900
rosa_samantha	Rh3AG183300 Rh3BG209700 Rh3CG206800 Rh3DG206700
rosa_wichuraiana	Rw0G008090 Rw0G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	194, 327
AccB1I	GGYRCC	1 cut(s)	169
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	4 cut(s)	78, 109, 313, 513
AcoI	YGGCCR	1 cut(s)	830
AcsI	RAATTY	5 cut(s)	186, 260, 440, 532, 865
AcuI	CTGAAG	3 cut(s)	512, 758, 779
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	2 cut(s)	64, 147
AgsI	TTSAA	7 cut(s)	20, 136, 386, 425, 454, 607, 1114
AjiI	CACGTC	1 cut(s)	64
AluBI	AGCT	9 cut(s)	53, 269, 284, 382, 597, 626, 709, 816, 1182
AluI	AGCT	9 cut(s)	53, 269, 284, 382, 597, 626, 709, 816, 1182
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	54, 923
Ama87I	CYCGRG	2 cut(s)	57, 300
AoxI	GGCC	1 cut(s)	830
ApeKI	GCWGC	3 cut(s)	53, 269, 813
ApoI	RAATTY	5 cut(s)	186, 260, 440, 532, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	1000, 1032
AseI	ATTAAT	1 cut(s)	546
AsuC2I	CCSGG	3 cut(s)	43, 301, 302
AsuHPI	GGTGA	4 cut(s)	107, 502, 788, 953
AvaI	CYCGRG	2 cut(s)	57, 300
BalI	TGGCCA	1 cut(s)	832
BanI	GGYRCC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	1074, 1106
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	40, 256, 825
BccI	CCATC	1 cut(s)	771
BciVI	GTATCC	1 cut(s)	298
BcnI	CCSGG	3 cut(s)	43, 301, 302
BcoDI	GTCTC	2 cut(s)	54, 923
BfaI	CTAG	2 cut(s)	767, 1094
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	4 cut(s)	54, 270, 314, 814
BlsI	GCNGC	4 cut(s)	55, 271, 315, 815
Bme1390I	CCNGG	3 cut(s)	43, 301, 302
BmeT110I	CYCGRG	2 cut(s)	57, 300
BmgBI	CACGTC	1 cut(s)	64
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	3 cut(s)	43, 301, 302
BmrI	ACTGGG	3 cut(s)	269, 423, 1087
BmsI	GCATC	2 cut(s)	83, 1091
BmuI	ACTGGG	3 cut(s)	269, 423, 1087
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	3 cut(s)	43, 301, 302
BsaJI	CCNNGG	2 cut(s)	300, 950
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 147
Bse1I	ACTGG	5 cut(s)	14, 152, 275, 429, 1082
Bse3DI	GCAATG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	300, 950
BseGI	GGATG	3 cut(s)	74, 811, 916
BseLI	CCNNNNNNNGG	2 cut(s)	64, 147
BseMI	GCAATG	1 cut(s)	221
BseNI	ACTGG	5 cut(s)	14, 152, 275, 429, 1082
BseXI	GCAGC	3 cut(s)	40, 256, 825
BsgI	GTGCAG	1 cut(s)	659
BshFI	GGCC	1 cut(s)	832
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	2 cut(s)	57, 300
BsiSI	CCGG	3 cut(s)	43, 301, 1086
BslFI	GGGAC	1 cut(s)	1021
BslI	CCNNNNNNNGG	2 cut(s)	64, 147
BsmAI	GTCTC	2 cut(s)	54, 923
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	1 cut(s)	1021
BsmI	GAATGC	1 cut(s)	1169
BsnI	GGCC	1 cut(s)	832
BsoBI	CYCGRG	2 cut(s)	57, 300
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	163, 849
BspACI	CCGC	4 cut(s)	78, 109, 313, 513
BspANI	GGCC	1 cut(s)	832
BspHI	TCATGA	1 cut(s)	160
BspLI	GGNNCC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	604
BspT107I	GGYRCC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	5 cut(s)	14, 152, 275, 429, 1082
BssECI	CCNNGG	2 cut(s)	300, 950
BssMI	GATC	2 cut(s)	163, 849
BssNAI	GTATAC	1 cut(s)	297
Bst1107I	GTATAC	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	934
Bst6I	CTCTTC	1 cut(s)	604
BstC8I	GCNNGC	2 cut(s)	1001, 1180
BstDEI	CTNAG	2 cut(s)	467, 971
BstF5I	GGATG	3 cut(s)	74, 811, 916
BstKTI	GATC	2 cut(s)	166, 852
BstMAI	GTCTC	2 cut(s)	54, 923
BstMBI	GATC	2 cut(s)	163, 849
BstNSI	RCATGY	2 cut(s)	519, 1222
BstSCI	CCNGG	3 cut(s)	41, 299, 300
BstV1I	GCAGC	3 cut(s)	40, 256, 825
BstZ17I	GTATAC	1 cut(s)	297
BsuI	GTATCC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	832
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	74, 811, 916
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	233, 282, 1066
Cac8I	GCNNGC	2 cut(s)	1001, 1180
CciI	TCATGA	1 cut(s)	160
Cfr9I	CCCGGG	1 cut(s)	300
CseI	GACGC	1 cut(s)	578
Csp6I	GTAC	1 cut(s)	690
CviAII	CATG	9 cut(s)	161, 292, 447, 516, 562, 646, 847, 1157, 1219
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	2 cut(s)	467, 971
DpnI	GATC	2 cut(s)	165, 851
DpnII	GATC	2 cut(s)	163, 849
DraI	TTTAAA	1 cut(s)	870
EaeI	YGGCCR	1 cut(s)	830
Eam1104I	CTCTTC	1 cut(s)	604
EarI	CTCTTC	1 cut(s)	604
EciI	GGCGGA	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	613
Eco57I	CTGAAG	3 cut(s)	512, 758, 779
Eco88I	CYCGRG	2 cut(s)	57, 300
EcoRV	GATATC	1 cut(s)	613
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	9 cut(s)	164, 295, 450, 519, 565, 649, 850, 1160, 1222
FalI	AAGNNNNNCTT	2 cut(s)	1171, 1203
FaqI	GGGAC	1 cut(s)	1021
FatI	CATG	9 cut(s)	160, 291, 446, 515, 561, 645, 846, 1156, 1218
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	4 cut(s)	54, 270, 314, 814
FokI	GGATG	3 cut(s)	61, 818, 923
Fsp4HI	GCNGC	4 cut(s)	54, 270, 314, 814
FspBI	CTAG	2 cut(s)	767, 1094
GluI	GCNGC	4 cut(s)	54, 270, 314, 814
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	3 cut(s)	43, 301, 1086
HgaI	GACGC	1 cut(s)	578
Hin1II	CATG	9 cut(s)	164, 295, 450, 519, 565, 649, 850, 1160, 1222
HindIII	AAGCTT	2 cut(s)	380, 1180
HinfI	GANTC	3 cut(s)	112, 670, 790
HpaII	CCGG	3 cut(s)	43, 301, 1086
HphI	GGTGA	4 cut(s)	107, 502, 788, 953
Hpy166II	GTNNAC	2 cut(s)	297, 1050
Hpy188I	TCNGA	8 cut(s)	438, 531, 568, 738, 798, 1075, 1144, 1202
Hpy188III	TCNNGA	4 cut(s)	161, 551, 767, 1094
Hpy8I	GTNNAC	2 cut(s)	297, 1050
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	934
HpyCH4IV	ACGT	2 cut(s)	63, 1026
HpyCH4V	TGCA	6 cut(s)	74, 87, 226, 369, 676, 1003
HpyF3I	CTNAG	2 cut(s)	467, 971
HpySE526I	ACGT	2 cut(s)	63, 1026
Hsp92II	CATG	9 cut(s)	164, 295, 450, 519, 565, 649, 850, 1160, 1222
Kzo9I	GATC	2 cut(s)	163, 849
LguI	GCTCTTC	1 cut(s)	604
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	40, 256, 825
LweI	GCATC	2 cut(s)	83, 1091
MaeI	CTAG	2 cut(s)	767, 1094
MaeII	ACGT	2 cut(s)	63, 1026
MaeIII	GTNAC	5 cut(s)	29, 412, 456, 959, 1061
MalI	GATC	2 cut(s)	165, 851
MboI	GATC	2 cut(s)	163, 849
MboII	GAAGA	5 cut(s)	591, 751, 785, 1126, 1172
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	832
MluNI	TGGCCA	1 cut(s)	832
MmeI	TCCRAC	5 cut(s)	162, 165, 546, 630, 1225
Mox20I	TGGCCA	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	832
MseI	TTAA	7 cut(s)	48, 546, 591, 869, 956, 983, 1149
MslI	CAYNNNNRTG	2 cut(s)	226, 327
Msp20I	TGGCCA	1 cut(s)	832
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	3 cut(s)	43, 301, 1086
MspR9I	CCNGG	3 cut(s)	43, 301, 302
Mva1269I	GAATGC	1 cut(s)	1169
NciI	CCSGG	3 cut(s)	43, 301, 302
NdeII	GATC	2 cut(s)	163, 849
NlaIII	CATG	9 cut(s)	164, 295, 450, 519, 565, 649, 850, 1160, 1222
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	3 cut(s)	456, 959, 1061
NspI	RCATGY	2 cut(s)	519, 1222
PagI	TCATGA	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	604
PctI	GAATGC	1 cut(s)	1169
PfeI	GAWTC	3 cut(s)	112, 670, 790
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	55, 271, 315, 815
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	2 cut(s)	194, 327
PspN4I	GGNNCC	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
RseI	CAYNNNNRTG	2 cut(s)	226, 327
SapI	GCTCTTC	1 cut(s)	604
SaqAI	TTAA	7 cut(s)	48, 546, 591, 869, 956, 983, 1149
SatI	GCNGC	4 cut(s)	54, 270, 314, 814
Sau3AI	GATC	2 cut(s)	163, 849
ScrFI	CCNGG	3 cut(s)	43, 301, 302
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	83, 1091
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	226, 327
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SsiI	CCGC	4 cut(s)	78, 109, 313, 513
SspI	AATATT	1 cut(s)	207
SspMI	CTAG	2 cut(s)	767, 1094
StyD4I	CCNGG	3 cut(s)	41, 299, 300
TaaI	ACNGT	1 cut(s)	934
TaiI	ACGT	2 cut(s)	66, 1029
TaqI	TCGA	1 cut(s)	705
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	3 cut(s)	112, 670, 790
Tru1I	TTAA	7 cut(s)	48, 546, 591, 869, 956, 983, 1149
Tru9I	TTAA	7 cut(s)	48, 546, 591, 869, 956, 983, 1149
TscAI	CASTG	3 cut(s)	233, 282, 1066
TseFI	GTSAC	3 cut(s)	456, 959, 1061
TseI	GCWGC	3 cut(s)	53, 269, 813
Tsp45I	GTSAC	3 cut(s)	456, 959, 1061
TspDTI	ATGAA	5 cut(s)	273, 591, 634, 714, 1173
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	3 cut(s)	233, 282, 1066
Van91I	CCANNNNNTGG	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	5 cut(s)	186, 260, 440, 532, 865
XbaI	TCTAGA	2 cut(s)	766, 1093
XceI	RCATGY	2 cut(s)	519, 1222
XcmI	CCANNNNNNNNNTGG	2 cut(s)	282, 770
XmaI	CCCGGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	2 cut(s)	767, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.