Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007912

Physical Location & Seq

Genomic Coordinates Reverse (-)

12278686 .. 12281241

Gene Structure 2556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTTCGTATGGAGCACCTTCCGGTGGAGGTCATAGGTAACATACTGTCGCGGCTTAGAGCTGCCCGGGATGTGGTGATTGCATCTGCGACGTGCAAGAAATGGAGAGAGGCTTGGCGAAACCACCTCCACACTCTATCTTTCAATTCCAACGATTGGCCTGTCTATCATGATCTCACGACAAGTAGGTTGGAGATTCTGATAACCCAGACCATATTCCAAACGACTGGTTTGCAGTGTTTATCGATTTTTATGGATGATGTTGATGAGTTCTCAGCTGCCCCAGTGATTGCTTGGCTCATGTATACTCGGGACACCTTGCGGCAATTGCATTATAATGTGCGGACAACACCAAATGTTAATATCATTGAGAAATGTAGTCGTCAGAAGCTTGAAGTGTTGGCCTTGGCTCATAATTCTGTAACAGGTGTTGAACCAAGTTATCAGAAGTTTCTGTGCTTGAAGTCACTTTCCTTGAGTTATGTCTGCATCTCAGCTTTGGATTTGAGCCTTTTACTCACTGCATGTCCAAGACTTACCAGTTTGTCTCTTATTAATCCTGATATAGCCATGTCAGATGCACAGGCAACAATGGAACTTACCAGTGCCTCATTGAAAGATATATATGTTGAAGCAGTCAGTTTAGATAAGTTCATATTGGAGGCGGATACCCTTGAGAATCTGCACTTGAAAGATTGTACATTGGAGCTTTTTGAGCTTCTTGGTAAGGGGTCATTGAAGGTTTTGAAGATTGATGATGTTAGTGTGCTCCATCTCGATATTGGTGAAAACACAGAGAATCTTCAGATTGTGGATGTCAGCAGCTTCACAATCATGTGGCCAAAGTTCTATAACATGATCTCTAAGTCATCAAACTTAAAGAGGCTTCGACTATGGGGTGTAGTGTTTGATGATGAGGATGAGGTTGTGGATTTGGAGAATGTTTCTGTTTGCTTCCCACTGTTGAGCCACCTATCCTTGAGTTATGATTTAAGAGATGTTTGTGGCTTGCAGGGGACATCTCGTTTGGAGAATGTGGTTGTTTTAGAACTTGGATGGACTATAATCAGTGAGCTCTTCTCTGAATGGGTAGCAGGACTTATAGAGAGATGCCCTAAATTGAGAAAGTTGGTCATCTATGGGGTTGTTTCAGAAGCCAAATCCCAGGAAGAGTGCCAAACTTTGGCAAACTTCACCTCTGCCATTGTCCGGCTGATGAGAAAATATATGCATGTGGAGATTCAGTTTGAATATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

420

Amino Acids

47.65

Weight (kDa)

5.2

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	5 - 39	1.4e-07	F-box-like
LRR_At5g56370	PF24758	129 - 325	1.7e-08	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67190 AT1G67190
fragaria_vesca	FvH4_6g18580
malus_domestica	MD14G1022200.v1.1
prunus_persica	Prupe.6G129400_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1
pyrus_communis	pycom12g02320 pycom14g02120
rosa_chinensis	RchiOBHm_Chr3g0473131
rosa_laevigata	RLG00000024025
rosa_multiflora	Rmu_sc0016115.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408290
rosa_rugosa	Rorug03G0131900
rosa_samantha	Rh3AG183300 Rh3BG209700 Rh3CG206800 Rh3DG206700
rosa_wichuraiana	Rw0G008090 Rw0G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AccB7I	CCANNNNNTGG	2 cut(s)	156, 1183
AccI	GTMKAC	1 cut(s)	305
AccII	CGCG	1 cut(s)	52
AciI	CCGC	4 cut(s)	52, 322, 343, 665
AcoI	YGGCCR	1 cut(s)	839
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	1 cut(s)	700
AfiI	CCNNNNNNNGG	5 cut(s)	25, 73, 156, 1183, 1209
AjiI	CACGTC	1 cut(s)	93
AjnI	CCWGG	1 cut(s)	1164
AluBI	AGCT	8 cut(s)	62, 278, 391, 497, 709, 718, 825, 1075
AluI	AGCT	8 cut(s)	62, 278, 391, 497, 709, 718, 825, 1075
Alw21I	GWGCWC	3 cut(s)	18, 771, 1077
Alw26I	GTCTC	1 cut(s)	552
Ama87I	CYCGRG	2 cut(s)	66, 309
AoxI	GGCC	3 cut(s)	158, 402, 839
ApeKI	GCWGC	3 cut(s)	62, 278, 822
ArsI	GACNNNNNNTTYG	2 cut(s)	1009, 1041
AseI	ATTAAT	1 cut(s)	555
AsuC2I	CCSGG	2 cut(s)	67, 68
AsuHPI	GGTGA	3 cut(s)	88, 797, 1186
AvaI	CYCGRG	2 cut(s)	66, 309
BalI	TGGCCA	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	1077
Bbv12I	GWGCWC	3 cut(s)	18, 771, 1077
BbvI	GCAGC	3 cut(s)	49, 265, 834
BccI	CCATC	2 cut(s)	780, 1050
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	1 cut(s)	1166
BciVI	GTATCC	1 cut(s)	661
BcnI	CCSGG	2 cut(s)	67, 68
BcoDI	GTCTC	1 cut(s)	552
BfuI	GTATCC	1 cut(s)	661
BisI	GCNGC	5 cut(s)	53, 63, 279, 323, 823
BlsI	GCNGC	5 cut(s)	54, 64, 280, 324, 824
Bme1390I	CCNGG	3 cut(s)	67, 68, 1166
BmeT110I	CYCGRG	2 cut(s)	66, 309
BmgBI	CACGTC	1 cut(s)	93
BmrFI	CCNGG	3 cut(s)	67, 68, 1166
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	4 cut(s)	92, 498, 568, 1100
BmuI	ACTGGG	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	1064, 1096
BpuEI	CTTGAG	3 cut(s)	496, 695, 1000
BpuMI	CCSGG	2 cut(s)	67, 68
Bsa29I	ATCGAT	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	66, 405, 1164
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	1229, 1259
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 73, 156, 1183, 1209
Bse1I	ACTGG	4 cut(s)	232, 284, 540, 603
BseBI	CCWGG	1 cut(s)	1166
BseCI	ATCGAT	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	66, 405, 1164
BseGI	GGATG	5 cut(s)	76, 262, 820, 925, 1061
BseLI	CCNNNNNNNGG	5 cut(s)	25, 73, 156, 1183, 1209
BseMII	CTCAG	2 cut(s)	288, 507
BseNI	ACTGG	4 cut(s)	232, 284, 540, 603
BseXI	GCAGC	3 cut(s)	49, 265, 834
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	3 cut(s)	160, 404, 841
BshVI	ATCGAT	1 cut(s)	245
BsiHKAI	GWGCWC	3 cut(s)	18, 771, 1077
BsiHKCI	CYCGRG	2 cut(s)	66, 309
BsiSI	CCGG	3 cut(s)	23, 67, 1210
BslFI	GGGAC	2 cut(s)	326, 1030
BslI	CCNNNNNNNGG	5 cut(s)	25, 73, 156, 1183, 1209
BsmAI	GTCTC	1 cut(s)	552
BsmFI	GGGAC	2 cut(s)	326, 1030
BsnI	GGCC	3 cut(s)	160, 404, 841
BsoBI	CYCGRG	2 cut(s)	66, 309
Bsp1286I	GDGCHC	3 cut(s)	18, 771, 1077
Bsp1407I	TGTACA	1 cut(s)	698
Bsp143I	GATC	2 cut(s)	172, 858
BspACI	CCGC	4 cut(s)	52, 322, 343, 665
BspANI	GGCC	3 cut(s)	160, 404, 841
BspCNI	CTCAG	2 cut(s)	287, 506
BspDI	ATCGAT	1 cut(s)	245
BspFNI	CGCG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	169
BspQI	GCTCTTC	1 cut(s)	1082
BsrGI	TGTACA	1 cut(s)	698
BsrI	ACTGG	4 cut(s)	232, 284, 540, 603
BssECI	CCNNGG	3 cut(s)	66, 405, 1164
BssMI	GATC	2 cut(s)	172, 858
BssNAI	GTATAC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	405
Bst1107I	GTATAC	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	1166
Bst4CI	ACNGT	2 cut(s)	48, 963
Bst6I	CTCTTC	2 cut(s)	1082, 1164
BstAUI	TGTACA	1 cut(s)	698
BstC8I	GCNNGC	1 cut(s)	1010
BstDEI	CTNAG	4 cut(s)	56, 274, 493, 864
BstF5I	GGATG	5 cut(s)	76, 262, 820, 925, 1061
BstFNI	CGCG	1 cut(s)	52
BstKTI	GATC	2 cut(s)	175, 861
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	2 cut(s)	172, 858
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 715
BstNI	CCWGG	1 cut(s)	1166
BstNSI	RCATGY	2 cut(s)	528, 1235
BstSCI	CCNGG	3 cut(s)	65, 66, 1164
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	49, 265, 834
BstXI	CCANNNNNNTGG	1 cut(s)	227
BstZ17I	GTATAC	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	661
BsuRI	GGCC	3 cut(s)	160, 404, 841
BsuTUI	ATCGAT	1 cut(s)	245
BtrI	CACGTC	1 cut(s)	93
BtsCI	GGATG	5 cut(s)	76, 262, 820, 925, 1061
BtsI	GCAGTG	2 cut(s)	242, 519
BtsIMutI	CAGTG	6 cut(s)	242, 291, 519, 610, 959, 1075
Cac8I	GCNNGC	1 cut(s)	1010
CciI	TCATGA	1 cut(s)	169
Cfr9I	CCCGGG	1 cut(s)	66
ClaI	ATCGAT	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	7 cut(s)	170, 301, 525, 571, 835, 856, 1232
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	4 cut(s)	56, 274, 493, 864
DpnI	GATC	2 cut(s)	174, 860
DpnII	GATC	2 cut(s)	172, 858
EaeI	YGGCCR	1 cut(s)	839
Eam1104I	CTCTTC	2 cut(s)	1082, 1164
EarI	CTCTTC	2 cut(s)	1082, 1164
EciI	GGCGGA	1 cut(s)	680
Ecl136II	GAGCTC	1 cut(s)	1075
Eco130I	CCWWGG	1 cut(s)	405
Eco24I	GRGCYC	1 cut(s)	1077
Eco53kI	GAGCTC	1 cut(s)	1075
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	2 cut(s)	66, 309
EcoICRI	GAGCTC	1 cut(s)	1075
EcoRII	CCWGG	1 cut(s)	1164
EcoT14I	CCWWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	1233
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	1 cut(s)	405
FaeI	CATG	7 cut(s)	173, 304, 528, 574, 838, 859, 1235
FaqI	GGGAC	2 cut(s)	326, 1030
FatI	CATG	7 cut(s)	169, 300, 524, 570, 834, 855, 1231
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	5 cut(s)	53, 63, 279, 323, 823
FokI	GGATG	5 cut(s)	83, 269, 827, 932, 1068
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	5 cut(s)	53, 63, 279, 323, 823
GluI	GCNGC	5 cut(s)	53, 63, 279, 323, 823
HaeIII	GGCC	3 cut(s)	160, 404, 841
HapII	CCGG	3 cut(s)	23, 67, 1210
Hin1II	CATG	7 cut(s)	173, 304, 528, 574, 838, 859, 1235
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	4 cut(s)	196, 679, 799, 1240
HpaII	CCGG	3 cut(s)	23, 67, 1210
HphI	GGTGA	3 cut(s)	88, 797, 1186
Hpy166II	GTNNAC	1 cut(s)	306
Hpy188I	TCNGA	7 cut(s)	201, 387, 447, 577, 807, 1084, 1153
Hpy188III	TCNNGA	5 cut(s)	170, 178, 311, 560, 776
Hpy8I	GTNNAC	1 cut(s)	306
Hpy99I	CGWCG	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	29, 733
HpyCH4III	ACNGT	2 cut(s)	48, 963
HpyCH4IV	ACGT	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 715
HpyF3I	CTNAG	4 cut(s)	56, 274, 493, 864
HpySE526I	ACGT	1 cut(s)	92
Hsp92II	CATG	7 cut(s)	173, 304, 528, 574, 838, 859, 1235
Kzo9I	GATC	2 cut(s)	172, 858
LguI	GCTCTTC	1 cut(s)	1082
LmnI	GCTCC	3 cut(s)	13, 706, 774
Lsp1109I	GCAGC	3 cut(s)	49, 265, 834
LweI	GCATC	4 cut(s)	92, 498, 568, 1100
MaeII	ACGT	1 cut(s)	92
MaeIII	GTNAC	3 cut(s)	38, 421, 465
MalI	GATC	2 cut(s)	174, 860
MboI	GATC	2 cut(s)	172, 858
MboII	GAAGA	4 cut(s)	760, 794, 1069, 1181
MfeI	CAATTG	1 cut(s)	326
MhlI	GDGCHC	3 cut(s)	18, 771, 1077
MlsI	TGGCCA	1 cut(s)	841
MluCI	AATT	4 cut(s)	145, 326, 415, 1118
MluNI	TGGCCA	1 cut(s)	841
MmeI	TCCRAC	2 cut(s)	171, 174
MnlI	CCTC	9 cut(s)	22, 103, 137, 619, 655, 876, 910, 916, 1207
Mox20I	TGGCCA	1 cut(s)	841
Mph1103I	ATGCAT	1 cut(s)	1233
MscI	TGGCCA	1 cut(s)	841
MseI	TTAA	4 cut(s)	360, 555, 878, 992
MslI	CAYNNNNRTG	2 cut(s)	336, 833
Msp20I	TGGCCA	1 cut(s)	841
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	3 cut(s)	23, 67, 1210
MspR9I	CCNGG	3 cut(s)	67, 68, 1166
MunI	CAATTG	1 cut(s)	326
MvaI	CCWGG	1 cut(s)	1166
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	328, 715
NciI	CCSGG	2 cut(s)	67, 68
NdeII	GATC	2 cut(s)	172, 858
NlaIII	CATG	7 cut(s)	173, 304, 528, 574, 838, 859, 1235
NmuCI	GTSAC	1 cut(s)	465
NsiI	ATGCAT	1 cut(s)	1233
NspI	RCATGY	2 cut(s)	528, 1235
PagI	TCATGA	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	1082
PfeI	GAWTC	4 cut(s)	196, 679, 799, 1240
PflMI	CCANNNNNTGG	2 cut(s)	156, 1183
PkrI	GCNGC	5 cut(s)	54, 64, 280, 324, 824
PshBI	ATTAAT	1 cut(s)	555
PsiI	TTATAA	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	1077
Psp6I	CCWGG	1 cut(s)	1164
PspGI	CCWGG	1 cut(s)	1164
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
RseI	CAYNNNNRTG	2 cut(s)	336, 833
SacI	GAGCTC	1 cut(s)	1077
SapI	GCTCTTC	1 cut(s)	1082
SaqAI	TTAA	4 cut(s)	360, 555, 878, 992
SatI	GCNGC	5 cut(s)	53, 63, 279, 323, 823
Sau3AI	GATC	2 cut(s)	172, 858
ScrFI	CCNGG	3 cut(s)	67, 68, 1166
SduI	GDGCHC	3 cut(s)	18, 771, 1077
SfaNI	GCATC	4 cut(s)	92, 498, 568, 1100
SmaI	CCCGGG	1 cut(s)	68
SmiMI	CAYNNNNRTG	2 cut(s)	336, 833
SmlI	CTYRAG	3 cut(s)	475, 674, 979
SmoI	CTYRAG	3 cut(s)	475, 674, 979
Sse9I	AATT	4 cut(s)	145, 326, 415, 1118
SsiI	CCGC	4 cut(s)	52, 322, 343, 665
SstI	GAGCTC	1 cut(s)	1077
StyD4I	CCNGG	3 cut(s)	65, 66, 1164
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	48, 963
TaiI	ACGT	1 cut(s)	95
TaqI	TCGA	3 cut(s)	245, 777, 889
TasI	AATT	4 cut(s)	145, 326, 415, 1118
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	2 cut(s)	55, 325
TfiI	GAWTC	4 cut(s)	196, 679, 799, 1240
Tru1I	TTAA	4 cut(s)	360, 555, 878, 992
Tru9I	TTAA	4 cut(s)	360, 555, 878, 992
TscAI	CASTG	6 cut(s)	242, 291, 526, 610, 966, 1075
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	3 cut(s)	62, 278, 822
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	1 cut(s)	643
TspMI	CCCGGG	1 cut(s)	66
TspRI	CASTG	6 cut(s)	242, 291, 526, 610, 966, 1075
Van91I	CCANNNNNTGG	2 cut(s)	156, 1183
VspI	ATTAAT	1 cut(s)	555
XceI	RCATGY	2 cut(s)	528, 1235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	291, 779
XmaI	CCCGGG	1 cut(s)	66
XmiI	GTMKAC	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.