Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007912

Physical Location & Seq

Genomic Coordinates Reverse (-)

1659335 .. 1660093

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGCACCTTCCAGTTGAAGTCATAGGCAACATACTATCCCGGCTTAAAGCTGCCCGAGATGTGGTGATTGCATCTGCGACTTGTAAGAAATGGAGAGAGGCTTGGCGCAATCACCTCCACACTCTTTCTTTTAATTCCAATGATTGGTCCGTCTATCATGATCTGACAACAAGTAGATTGGAAATTCTTATAACTCAAACAATTTTCCAAACTACATCATTGCAGTGTTTATCAATTTTAATGGATGATGTTGATGAATTTTCAGCTGCCCCAGTGATTGCTTGGCTCATGTATACCCGGGATACCTTGCGGCAACTGCATTATAATGTGAGGACTACTCCGATTGTGAATATCATTGAGAAATGCAGTCGGCAGAAGCTTGAAGTCTTGGCATTGGCTTATAATTCTGTAACAGGTGTTGAACCCAGTTATGAGAAATTTCCATGCTTGAAGTCACTTTCACTAAGTTATGTCAGTATCTCAGCATGGGATTTGAGCCTTTTGCTTACCGCATGTCCAAAACTTCAGAATTTGGCTCTTATTAATCCTGATATTGCCATGTCGGATGCACAGGCAACCATGGAACTTAATAGTCCTTCTCTTAAAGATATCTATGTGGAAGCTGTCAGTTTGGATAAGTTCATACTCGAGGCTGATAGCATTGAGAATCTGCACCTGAAAGATTGTACCCTCGAGCTTTTTGAGCTTATTGGTAAGGGGTCACTGAGAGTTTTGAAGATCGATCTTTGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

253

Amino Acids

28.52

Weight (kDa)

5.54

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	2 - 36	6.4e-08	F-box-like
F-box	PF00646	2 - 39	8.1e-06	F-box domain
LRR_At5g56370	PF24758	126 - 228	2.4e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67190 AT1G67190
fragaria_vesca	FvH4_6g18580
malus_domestica	MD14G1022200.v1.1
prunus_persica	Prupe.6G129400_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1
pyrus_communis	pycom12g02320 pycom14g02120
rosa_chinensis	RchiOBHm_Chr3g0473131
rosa_laevigata	RLG00000024025
rosa_multiflora	Rmu_sc0016115.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408290
rosa_rugosa	Rorug03G0131900
rosa_samantha	Rh3AG183300 Rh3BG209700 Rh3CG206800 Rh3DG206700
rosa_wichuraiana	Rw0G008090 Rw0G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	194, 327, 405
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	2 cut(s)	313, 513
AcsI	RAATTY	4 cut(s)	186, 260, 440, 532
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	2 cut(s)	64, 147
AgsI	TTSAA	5 cut(s)	20, 386, 425, 454, 739
AluBI	AGCT	6 cut(s)	53, 269, 382, 626, 700, 709
AluI	AGCT	6 cut(s)	53, 269, 382, 626, 700, 709
Alw21I	GWGCWC	1 cut(s)	9
Ama87I	CYCGRG	4 cut(s)	57, 300, 650, 695
ApeKI	GCWGC	2 cut(s)	53, 269
ApoI	RAATTY	4 cut(s)	186, 260, 440, 532
AseI	ATTAAT	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	3 cut(s)	43, 301, 302
AsuHPI	GGTGA	2 cut(s)	79, 107
AvaI	CYCGRG	4 cut(s)	57, 300, 650, 695
AvaII	GGWCC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	40, 256
BciVI	GTATCC	1 cut(s)	298
BcnI	CCSGG	3 cut(s)	43, 301, 302
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	3 cut(s)	54, 270, 314
BlsI	GCNGC	3 cut(s)	55, 271, 315
Bme1390I	CCNGG	3 cut(s)	43, 301, 302
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	4 cut(s)	57, 300, 650, 695
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	3 cut(s)	43, 301, 302
BmrI	ACTGGG	2 cut(s)	269, 423
BmsI	GCATC	2 cut(s)	83, 559
BmuI	ACTGGG	2 cut(s)	269, 423
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpuMI	CCSGG	3 cut(s)	43, 301, 302
Bsa29I	ATCGAT	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	300, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 147
Bse1I	ACTGG	3 cut(s)	14, 275, 429
Bse3DI	GCAATG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	300, 582
BseGI	GGATG	2 cut(s)	253, 574
BseLI	CCNNNNNNNGG	2 cut(s)	64, 147
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	498, 719
BseNI	ACTGG	3 cut(s)	14, 275, 429
BseXI	GCAGC	2 cut(s)	40, 256
BsgI	GTGCAG	1 cut(s)	659
BshVI	ATCGAT	1 cut(s)	744
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	4 cut(s)	57, 300, 650, 695
BsiSI	CCGG	2 cut(s)	43, 301
BslI	CCNNNNNNNGG	2 cut(s)	64, 147
BsoBI	CYCGRG	4 cut(s)	57, 300, 650, 695
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	163, 741, 745
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	2 cut(s)	313, 513
BspCNI	CTCAG	2 cut(s)	497, 720
BspDI	ATCGAT	1 cut(s)	744
BspHI	TCATGA	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	3 cut(s)	14, 275, 429
BssECI	CCNNGG	2 cut(s)	300, 582
BssMI	GATC	3 cut(s)	163, 741, 745
BssNAI	GTATAC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	582
Bst1107I	GTATAC	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	467, 484, 728
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	253, 574
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	166, 744, 748
BstMBI	GATC	3 cut(s)	163, 741, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 706
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	41, 299, 300
BstV1I	GCAGC	2 cut(s)	40, 256
BstZ17I	GTATAC	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	744
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	253, 574
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	233, 282, 725
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	150
Cfr9I	CCCGGG	1 cut(s)	300
ClaI	ATCGAT	1 cut(s)	744
Csp6I	GTAC	1 cut(s)	690
CviAII	CATG	7 cut(s)	161, 292, 447, 489, 516, 562, 583
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	3 cut(s)	467, 484, 728
DpnI	GATC	3 cut(s)	165, 743, 747
DpnII	GATC	3 cut(s)	163, 741, 745
Eco130I	CCWWGG	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	4 cut(s)	57, 300, 650, 695
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	7 cut(s)	164, 295, 450, 492, 519, 565, 586
FatI	CATG	7 cut(s)	160, 291, 446, 488, 515, 561, 582
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	54, 270, 314
FokI	GGATG	2 cut(s)	260, 581
Fsp4HI	GCNGC	3 cut(s)	54, 270, 314
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	3 cut(s)	54, 270, 314
HapII	CCGG	2 cut(s)	43, 301
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	7 cut(s)	164, 295, 450, 492, 519, 565, 586
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	670
HpaII	CCGG	2 cut(s)	43, 301
HphI	GGTGA	2 cut(s)	79, 107
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	4 cut(s)	168, 345, 531, 568
Hpy188III	TCNNGA	2 cut(s)	161, 551
Hpy8I	GTNNAC	1 cut(s)	297
HpyAV	CCTTC	2 cut(s)	20, 609
HpyCH4V	TGCA	6 cut(s)	74, 226, 322, 369, 572, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 706
HpyF3I	CTNAG	3 cut(s)	467, 484, 728
Hsp92II	CATG	7 cut(s)	164, 295, 450, 492, 519, 565, 586
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	163, 741, 745
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	27, 56, 288, 314, 402, 442, 560, 564, 692
Lsp1109I	GCAGC	2 cut(s)	40, 256
LweI	GCATC	2 cut(s)	83, 559
MaeIII	GTNAC	3 cut(s)	412, 456, 723
MalI	GATC	3 cut(s)	165, 743, 747
MboI	GATC	3 cut(s)	163, 741, 745
MboII	GAAGA	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	8 cut(s)	136, 186, 204, 237, 260, 406, 440, 532
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	5 cut(s)	94, 128, 327, 646, 704
MseI	TTAA	6 cut(s)	48, 135, 242, 546, 591, 606
MslI	CAYNNNNRTG	2 cut(s)	226, 327
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	43, 301
MspR9I	CCNGG	3 cut(s)	43, 301, 302
MwoI	GCNNNNNNNGC	2 cut(s)	319, 706
NciI	CCSGG	3 cut(s)	43, 301, 302
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	3 cut(s)	163, 741, 745
NlaIII	CATG	7 cut(s)	164, 295, 450, 492, 519, 565, 586
NmuCI	GTSAC	2 cut(s)	456, 723
NspI	RCATGY	1 cut(s)	519
PaeR7I	CTCGAG	2 cut(s)	650, 695
PagI	TCATGA	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	670
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	55, 271, 315
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	3 cut(s)	194, 327, 405
PspPI	GGNCC	1 cut(s)	150
PspXI	VCTCGAGB	2 cut(s)	650, 695
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
RseI	CAYNNNNRTG	2 cut(s)	226, 327
SaqAI	TTAA	6 cut(s)	48, 135, 242, 546, 591, 606
SatI	GCNGC	3 cut(s)	54, 270, 314
Sau3AI	GATC	3 cut(s)	163, 741, 745
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	3 cut(s)	43, 301, 302
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	83, 559
Sfr274I	CTCGAG	2 cut(s)	650, 695
SinI	GGWCC	1 cut(s)	150
SlaI	CTCGAG	2 cut(s)	650, 695
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	226, 327
SmlI	CTYRAG	2 cut(s)	650, 695
SmoI	CTYRAG	2 cut(s)	650, 695
Sse9I	AATT	8 cut(s)	136, 186, 204, 237, 260, 406, 440, 532
SsiI	CCGC	2 cut(s)	313, 513
StyD4I	CCNGG	3 cut(s)	41, 299, 300
StyI	CCWWGG	1 cut(s)	582
TaqI	TCGA	3 cut(s)	651, 696, 744
TasI	AATT	8 cut(s)	136, 186, 204, 237, 260, 406, 440, 532
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	6 cut(s)	48, 135, 242, 546, 591, 606
Tru9I	TTAA	6 cut(s)	48, 135, 242, 546, 591, 606
TscAI	CASTG	3 cut(s)	233, 282, 732
TseFI	GTSAC	2 cut(s)	456, 723
TseI	GCWGC	2 cut(s)	53, 269
Tsp45I	GTSAC	2 cut(s)	456, 723
TspDTI	ATGAA	2 cut(s)	273, 634
TspGWI	ACGGA	1 cut(s)	142
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	3 cut(s)	233, 282, 732
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	150
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	4 cut(s)	186, 260, 440, 532
XceI	RCATGY	1 cut(s)	519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
XhoI	CTCGAG	2 cut(s)	650, 695
XmaI	CCCGGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.