Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007912

Physical Location & Seq

Genomic Coordinates Reverse (-)

2032700 .. 2035066

Gene Structure 2367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1022200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGAGCACCTTCCAGTTGAAGTCATAGGTAACATACTATCCCGGCTTAAAGCTGCCCGAGATGTGGTGATTGCATCTGCGACTTGTAAGAAATGGAGAGAGGCTTGGCGCAACCACCTCCACACTCTTTCTTTTAATTCCAATGATTGGTCCGTCTATCATGATCTGACAACAAGTAGATTGGAAATTCTTATAACTCAAACAATTTTCCAAACTACATCATTGCAGTGTTTATCCATTTTAATGGATGATGTTGATGAATTTTCAGCTGCCCCAGTGATTGCTTGGCTCATGTATACCCGGGACACTTTGCGGCAACTGCATTATAATGTGAGGACTACTCCGATTGTGAATATCATTGAGAAATGCAGTCGGCAGAAGCTTGAAGTCTTGGCATTGGCTTATAATTCTGTAACAGGTGTTGAACCCAGTTATGAGAAATTTCCATGCTTGAAGTCACTTTCACTAAGTTATGTCAGTATCTCAGCATGGGATTTGAGCCTTTTGCTTACCGCATGTCCAAAACTTCAGAATTTGGCTCTTATTAATCCTGATATTGCCATGTCGGATGCACAGACAACCATGGAACTTAATAGTCCTTCTCTAAAAGATATCTATGTGGAAGCTGTCAGTTTGGATAAGTTCATACTAGAGGCTGATAGCATTGAGAATCTGCACCTGAAAGATTGTACCCTCGAGCTTTTTGAGCTTATTGGTAAGGGGTCACTGAGAGTTTTGAAGATCGATGATGTTAGTGTCCTCCATCTTGATATTGGTGATAACACAGAGAATCTTCAGATTGTGGATGTTAGCAGCTTCACTATCATGTGGCCAAAGTTCTATAACATGATCTCAAAATCGTCAAATTTAAAGAGGCTTCGGCTCTGGGGTGTTGTATTTGATGATGAGGATGGGGTTGTGGATTTGGAGACTGTTTCTTCTTGCTTCCCTCAGTTAAGCCACTTATCATTAAGTTATGACTTAAGAGATGTTTGTGGCTTGCAGGGGTCATCGCATTTGGAGAACGTGGTTGTGCTAGAACTTGGATGGACTATAATCAGTGAGCTCTTCTCAGACTGGGTAGCTGGATTTCTAGAAAGATGCCCTAATTTGAAGAAGTTAGTCATTTATGGGGTAGTTTCAGAAGCCAAATCCCATGAAGAGTGCCGAGTTTTAGCAAGCTTCACCTCTTCCATTGTCCGGCTGATGAGAAAATATCTGCATGTAGAGGTACAATTCGATTATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

417

Amino Acids

47.21

Weight (kDa)

5.11

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	2 - 36	1.3e-07	F-box-like
LRR_At5g56370	PF24758	126 - 229	5e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67190 AT1G67190
fragaria_vesca	FvH4_6g18580
malus_domestica	MD14G1022200.v1.1
prunus_persica	Prupe.6G129400_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1
pyrus_communis	pycom12g02320 pycom14g02120
rosa_chinensis	RchiOBHm_Chr3g0473131
rosa_laevigata	RLG00000024025
rosa_multiflora	Rmu_sc0016115.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408290
rosa_rugosa	Rorug03G0131900
rosa_samantha	Rh3AG183300 Rh3BG209700 Rh3CG206800 Rh3DG206700
rosa_wichuraiana	Rw0G008090 Rw0G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	194, 327, 405
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	2 cut(s)	313, 513
AcoI	YGGCCR	1 cut(s)	830
AcsI	RAATTY	5 cut(s)	186, 260, 440, 532, 865
AcuI	CTGAAG	2 cut(s)	512, 779
AfaI	GTAC	2 cut(s)	691, 1233
AfiI	CCNNNNNNNGG	3 cut(s)	64, 147, 1200
AflII	CTTAAG	1 cut(s)	982
AgsI	TTSAA	6 cut(s)	20, 386, 425, 454, 739, 1114
Alw21I	GWGCWC	2 cut(s)	9, 1068
Alw26I	GTCTC	1 cut(s)	923
Ama87I	CYCGRG	3 cut(s)	57, 300, 695
AoxI	GGCC	1 cut(s)	830
ApeKI	GCWGC	3 cut(s)	53, 269, 813
ApoI	RAATTY	5 cut(s)	186, 260, 440, 532, 865
AseI	ATTAAT	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	3 cut(s)	43, 301, 302
AsuHPI	GGTGA	3 cut(s)	79, 788, 1177
AvaI	CYCGRG	3 cut(s)	57, 300, 695
AvaII	GGWCC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	832
BanII	GRGCYC	1 cut(s)	1068
Bbv12I	GWGCWC	2 cut(s)	9, 1068
BbvI	GCAGC	3 cut(s)	40, 256, 825
BccI	CCATC	3 cut(s)	771, 905, 1041
BcnI	CCSGG	3 cut(s)	43, 301, 302
BcoDI	GTCTC	1 cut(s)	923
BfaI	CTAG	3 cut(s)	650, 1037, 1094
BfrI	CTTAAG	1 cut(s)	982
BisI	GCNGC	4 cut(s)	54, 270, 314, 814
BlsI	GCNGC	4 cut(s)	55, 271, 315, 815
Bme1390I	CCNGG	3 cut(s)	43, 301, 302
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	3 cut(s)	57, 300, 695
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	3 cut(s)	43, 301, 302
BmrI	ACTGGG	3 cut(s)	269, 423, 1087
BmsI	GCATC	3 cut(s)	83, 559, 1091
BmuI	ACTGGG	3 cut(s)	269, 423, 1087
BplI	GAGNNNNNCTC	4 cut(s)	325, 357, 1055, 1087
BpuMI	CCSGG	3 cut(s)	43, 301, 302
Bsa29I	ATCGAT	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	300, 582
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 147, 1200
Bse1I	ACTGG	4 cut(s)	14, 275, 429, 1082
Bse3DI	GCAATG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	300, 582
BseGI	GGATG	5 cut(s)	253, 574, 811, 916, 1052
BseLI	CCNNNNNNNGG	3 cut(s)	64, 147, 1200
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	4 cut(s)	498, 719, 965, 1086
BseNI	ACTGG	4 cut(s)	14, 275, 429, 1082
BseXI	GCAGC	3 cut(s)	40, 256, 825
BsgI	GTGCAG	1 cut(s)	659
BshFI	GGCC	1 cut(s)	832
BshVI	ATCGAT	1 cut(s)	744
BsiHKAI	GWGCWC	2 cut(s)	9, 1068
BsiHKCI	CYCGRG	3 cut(s)	57, 300, 695
BsiSI	CCGG	3 cut(s)	43, 301, 1201
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	64, 147, 1200
BsmAI	GTCTC	1 cut(s)	923
BsmFI	GGGAC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	832
BsoBI	CYCGRG	3 cut(s)	57, 300, 695
Bsp1286I	GDGCHC	2 cut(s)	9, 1068
Bsp143I	GATC	3 cut(s)	163, 741, 849
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	2 cut(s)	313, 513
BspANI	GGCC	1 cut(s)	832
BspCNI	CTCAG	4 cut(s)	497, 720, 964, 1085
BspDI	ATCGAT	1 cut(s)	744
BspHI	TCATGA	1 cut(s)	160
BspQI	GCTCTTC	1 cut(s)	1073
BspTI	CTTAAG	1 cut(s)	982
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	4 cut(s)	14, 275, 429, 1082
BssECI	CCNNGG	2 cut(s)	300, 582
BssMI	GATC	3 cut(s)	163, 741, 849
BssNAI	GTATAC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	582
Bst1107I	GTATAC	1 cut(s)	297
Bst4CI	ACNGT	1 cut(s)	934
Bst6I	CTCTTC	3 cut(s)	1073, 1155, 1195
BstAFI	CTTAAG	1 cut(s)	982
BstC8I	GCNNGC	2 cut(s)	1001, 1180
BstDEI	CTNAG	5 cut(s)	467, 484, 728, 951, 1072
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	5 cut(s)	253, 574, 811, 916, 1052
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	166, 744, 852
BstMAI	GTCTC	1 cut(s)	923
BstMBI	GATC	3 cut(s)	163, 741, 849
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 706
BstNSI	RCATGY	2 cut(s)	519, 1226
BstSCI	CCNGG	3 cut(s)	41, 299, 300
BstV1I	GCAGC	3 cut(s)	40, 256, 825
BstXI	CCANNNNNNTGG	1 cut(s)	244
BstZ17I	GTATAC	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	744
BsuRI	GGCC	1 cut(s)	832
BsuTUI	ATCGAT	1 cut(s)	744
BtgI	CCRYGG	1 cut(s)	582
BtgZI	GCGATG	1 cut(s)	996
BtsCI	GGATG	5 cut(s)	253, 574, 811, 916, 1052
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	4 cut(s)	233, 282, 725, 1066
Cac8I	GCNNGC	2 cut(s)	1001, 1180
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	150
Cfr9I	CCCGGG	1 cut(s)	300
ClaI	ATCGAT	1 cut(s)	744
Csp6I	GTAC	2 cut(s)	690, 1232
CviQI	GTAC	2 cut(s)	690, 1232
DdeI	CTNAG	5 cut(s)	467, 484, 728, 951, 1072
DpnI	GATC	3 cut(s)	165, 743, 851
DpnII	GATC	3 cut(s)	163, 741, 849
DraI	TTTAAA	1 cut(s)	870
EaeI	YGGCCR	1 cut(s)	830
Eam1104I	CTCTTC	3 cut(s)	1073, 1155, 1195
EarI	CTCTTC	3 cut(s)	1073, 1155, 1195
Ecl136II	GAGCTC	1 cut(s)	1066
Eco130I	CCWWGG	1 cut(s)	582
Eco24I	GRGCYC	1 cut(s)	1068
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	1066
Eco57I	CTGAAG	2 cut(s)	512, 779
Eco88I	CYCGRG	3 cut(s)	57, 300, 695
EcoICRI	GAGCTC	1 cut(s)	1066
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	582
EcoT38I	GRGCYC	1 cut(s)	1068
ErhI	CCWWGG	1 cut(s)	582
FaqI	GGGAC	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	4 cut(s)	54, 270, 314, 814
FokI	GGATG	5 cut(s)	260, 581, 818, 923, 1059
FriOI	GRGCYC	1 cut(s)	1068
Fsp4HI	GCNGC	4 cut(s)	54, 270, 314, 814
FspBI	CTAG	3 cut(s)	650, 1037, 1094
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	4 cut(s)	54, 270, 314, 814
HaeIII	GGCC	1 cut(s)	832
HapII	CCGG	3 cut(s)	43, 301, 1201
HhaI	GCGC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	2 cut(s)	380, 1180
HinfI	GANTC	2 cut(s)	670, 790
HpaII	CCGG	3 cut(s)	43, 301, 1201
HphI	GGTGA	3 cut(s)	79, 788, 1177
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	7 cut(s)	168, 345, 531, 568, 798, 1075, 1144
Hpy188III	TCNNGA	4 cut(s)	161, 551, 767, 1094
Hpy8I	GTNNAC	1 cut(s)	297
HpyAV	CCTTC	2 cut(s)	20, 609
HpyCH4III	ACNGT	1 cut(s)	934
HpyCH4IV	ACGT	1 cut(s)	1026
HpyCH4V	TGCA	8 cut(s)	74, 226, 322, 369, 572, 676, 1003, 1222
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 706
HpyF3I	CTNAG	5 cut(s)	467, 484, 728, 951, 1072
HpySE526I	ACGT	1 cut(s)	1026
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	163, 741, 849
LguI	GCTCTTC	1 cut(s)	1073
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	3 cut(s)	40, 256, 825
LweI	GCATC	3 cut(s)	83, 559, 1091
MaeI	CTAG	3 cut(s)	650, 1037, 1094
MaeII	ACGT	1 cut(s)	1026
MaeIII	GTNAC	4 cut(s)	29, 412, 456, 723
MalI	GATC	3 cut(s)	165, 743, 851
MboI	GATC	3 cut(s)	163, 741, 849
MboII	GAAGA	7 cut(s)	751, 785, 930, 1060, 1126, 1172, 1182
MhlI	GDGCHC	2 cut(s)	9, 1068
MlsI	TGGCCA	1 cut(s)	832
MluNI	TGGCCA	1 cut(s)	832
MmeI	TCCRAC	1 cut(s)	546
Mox20I	TGGCCA	1 cut(s)	832
MscI	TGGCCA	1 cut(s)	832
MseI	TTAA	9 cut(s)	48, 135, 242, 546, 591, 869, 956, 971, 983
MslI	CAYNNNNRTG	4 cut(s)	226, 242, 327, 824
Msp20I	TGGCCA	1 cut(s)	832
MspA1I	CMGCKG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	982
MspI	CCGG	3 cut(s)	43, 301, 1201
MspR9I	CCNGG	3 cut(s)	43, 301, 302
MwoI	GCNNNNNNNGC	2 cut(s)	319, 706
NciI	CCSGG	3 cut(s)	43, 301, 302
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	3 cut(s)	163, 741, 849
NmeAIII	GCCGAG	1 cut(s)	1193
NmuCI	GTSAC	2 cut(s)	456, 723
NspI	RCATGY	2 cut(s)	519, 1226
PaeR7I	CTCGAG	1 cut(s)	695
PagI	TCATGA	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	1073
PfeI	GAWTC	2 cut(s)	670, 790
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	55, 271, 315, 815
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	3 cut(s)	194, 327, 405
Psp124BI	GAGCTC	1 cut(s)	1068
PspPI	GGNCC	1 cut(s)	150
PspXI	VCTCGAGB	1 cut(s)	695
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	691, 1233
RsaNI	GTAC	2 cut(s)	690, 1232
RseI	CAYNNNNRTG	4 cut(s)	226, 242, 327, 824
SacI	GAGCTC	1 cut(s)	1068
SapI	GCTCTTC	1 cut(s)	1073
SaqAI	TTAA	9 cut(s)	48, 135, 242, 546, 591, 869, 956, 971, 983
SatI	GCNGC	4 cut(s)	54, 270, 314, 814
Sau3AI	GATC	3 cut(s)	163, 741, 849
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	3 cut(s)	43, 301, 302
SduI	GDGCHC	2 cut(s)	9, 1068
SfaNI	GCATC	3 cut(s)	83, 559, 1091
Sfr274I	CTCGAG	1 cut(s)	695
SinI	GGWCC	1 cut(s)	150
SlaI	CTCGAG	1 cut(s)	695
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	4 cut(s)	226, 242, 327, 824
SmlI	CTYRAG	2 cut(s)	695, 982
SmoI	CTYRAG	2 cut(s)	695, 982
SsiI	CCGC	2 cut(s)	313, 513
SspMI	CTAG	3 cut(s)	650, 1037, 1094
SstI	GAGCTC	1 cut(s)	1068
StyD4I	CCNGG	3 cut(s)	41, 299, 300
StyI	CCWWGG	1 cut(s)	582
TaaI	ACNGT	1 cut(s)	934
TaiI	ACGT	1 cut(s)	1029
TaqI	TCGA	3 cut(s)	696, 744, 1239
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	2 cut(s)	670, 790
Tru1I	TTAA	9 cut(s)	48, 135, 242, 546, 591, 869, 956, 971, 983
Tru9I	TTAA	9 cut(s)	48, 135, 242, 546, 591, 869, 956, 971, 983
TscAI	CASTG	4 cut(s)	233, 282, 732, 1066
TseFI	GTSAC	2 cut(s)	456, 723
TseI	GCWGC	3 cut(s)	53, 269, 813
Tsp45I	GTSAC	2 cut(s)	456, 723
TspDTI	ATGAA	3 cut(s)	273, 634, 1173
TspGWI	ACGGA	1 cut(s)	142
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	4 cut(s)	233, 282, 732, 1066
Van91I	CCANNNNNTGG	1 cut(s)	147
Vha464I	CTTAAG	1 cut(s)	982
VpaK11BI	GGWCC	1 cut(s)	150
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	5 cut(s)	186, 260, 440, 532, 865
XbaI	TCTAGA	1 cut(s)	1093
XceI	RCATGY	2 cut(s)	519, 1226
XcmI	CCANNNNNNNNNTGG	2 cut(s)	282, 770
XhoI	CTCGAG	1 cut(s)	695
XmaI	CCCGGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	3 cut(s)	650, 1037, 1094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.