Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007912

Physical Location & Seq

Genomic Coordinates Reverse (-)

18904211 .. 18906454

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG206700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGTTCGTATGGAGCACCTTCCGGTGGAAGTCATAGGTAACATACTATCGCGGCTTAGAGCTGCCCGAGATGTGGTTATTGCATCCGCAACTTGCAAGAAGTGGAGAGAGGCTTGGCGGAATCACCTCCACACTCTGTCTTTCAATTCCAGTGATTGGTCTGTCTACCGTGATCTCACAACGAGTAGATTGGAAATTCTGATAACTCAAACCATATTTCAAACCACTGCTTTGCAATGTTTATCAATTTTTATGGATGATGTAGATGAGTTCTCAGCTGCCCCAGTGATTGCTTGGCTCATGTATACGCGGGACACCTTGCGACAACTGCATTACAATGTGCGGACAACCCCAAATGTTAATATCATTGAGAAATGCAGTCGGCAGAAGCTTGAAGTCTTGGCCTTGGCTCATAATTCTGTAACAGGTGTTGAACCGAGTTATCAGAAGTTTCCGTGCTTGAAGTCACTTTCCTTGAGTTTTGTCAGCATCTCAGCATTGGATTTGAGCCTTTTACTCACTGCATGTCCAAAACTCACCAGTTTGTCTCTTGTTAATCCTGATATAGCAATGTCGGATGCACAGGCAACAATGAAACTTAGCAGTGTGTCATTGAAAGATATCTATGTTGAAGCAGTCAGTTTGGATAATTTCATATTGGAGTCTGATACCCTTGAGAATCTGCACTTGAAAGATTGTACCTTGGAGCTTTTTGAGCTTATTGGTAAGGGGTCATTGAAGGAATTGAAGATTGATGATGTTAGCGTGCTCCATCTCGATATTGGTGAGAACACTGAGAATCTTCAGATTGTGGATGTCAGCAGCTTCACAATCATGTGGCCAAAGTTCTATAACATGATATCTAAGTCATCAAATTTAAGGAGGCTTCGGCTATGGGGTGTTGTGTTTGATGATGAGGATGAGGTTGTGGATTTGGAGAATGTTTCTGTTTGCTTCCCACTGTTAAGCCACCTATCCCTAAGTTATGATTTAAGAGATGTTTGTGGCTTGCAGGGTACATCTCGTTTGGAGAATGTGGTTGTGTTAGAACTTGGATGGACTATAATCAGTGAGCTCTTCTCTGAATGGGTAGCAGGACTTATAGAGAGATGCCCTAAGTTGAGGAAGTTGGTCATTTATGGGGTTGTTTCAGAAGCCAAATCCCATGAAGAATGCCAAACTTTGGCAAACTTCACTTCGGCCATTGTCCGGCTGATGAGAAAATATATGCATGTGGAGATTCAGTTTGAATATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

419

Amino Acids

47.64

Weight (kDa)

5.26

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	5 - 39	1.4e-07	F-box-like
LRR_At5g56370	PF24758	129 - 232	2.5e-09	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67190 AT1G67190
fragaria_vesca	FvH4_6g18580
malus_domestica	MD14G1022200.v1.1
prunus_persica	Prupe.6G129400_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1
pyrus_communis	pycom12g02320 pycom14g02120
rosa_chinensis	RchiOBHm_Chr3g0473131
rosa_laevigata	RLG00000024025
rosa_multiflora	Rmu_sc0016115.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408290
rosa_rugosa	Rorug03G0131900
rosa_samantha	Rh3AG183300 Rh3BG209700 Rh3CG206800 Rh3DG206700
rosa_wichuraiana	Rw0G008090 Rw0G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	156, 1183
AccI	GTMKAC	2 cut(s)	165, 305
AccII	CGCG	2 cut(s)	52, 310
AciI	CCGC	5 cut(s)	52, 87, 118, 310, 343
AcoI	YGGCCR	2 cut(s)	839, 1200
AcsI	RAATTY	2 cut(s)	195, 874
AcuI	CTGAAG	1 cut(s)	788
AfaI	GTAC	2 cut(s)	700, 1018
AfiI	CCNNNNNNNGG	5 cut(s)	25, 73, 156, 1183, 1209
AluBI	AGCT	7 cut(s)	62, 278, 391, 709, 718, 825, 1075
AluI	AGCT	7 cut(s)	62, 278, 391, 709, 718, 825, 1075
Alw21I	GWGCWC	3 cut(s)	18, 771, 1077
Alw26I	GTCTC	1 cut(s)	552
Ama87I	CYCGRG	1 cut(s)	66
AoxI	GGCC	3 cut(s)	402, 839, 1200
ApeKI	GCWGC	3 cut(s)	62, 278, 822
ApoI	RAATTY	2 cut(s)	195, 874
AsuHPI	GGTGA	3 cut(s)	116, 529, 797
AvaI	CYCGRG	1 cut(s)	66
BalI	TGGCCA	1 cut(s)	841
BanII	GRGCYC	1 cut(s)	1077
Bbv12I	GWGCWC	3 cut(s)	18, 771, 1077
BbvI	GCAGC	3 cut(s)	49, 265, 834
BccI	CCATC	2 cut(s)	780, 1050
BcoDI	GTCTC	1 cut(s)	552
BisI	GCNGC	4 cut(s)	53, 63, 279, 823
BlsI	GCNGC	4 cut(s)	54, 64, 280, 824
BmeT110I	CYCGRG	1 cut(s)	66
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	4 cut(s)	92, 498, 568, 1100
BmuI	ACTGGG	1 cut(s)	278
BplI	GAGNNNNNCTC	2 cut(s)	1064, 1096
BpuEI	CTTGAG	2 cut(s)	496, 695
BsaJI	CCNNGG	2 cut(s)	405, 702
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	1229, 1259
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 73, 156, 1183, 1209
Bse1I	ACTGG	3 cut(s)	150, 284, 540
Bse3DI	GCAATG	2 cut(s)	242, 576
BseDI	CCNNGG	2 cut(s)	405, 702
BseGI	GGATG	6 cut(s)	83, 262, 583, 820, 925, 1061
BseLI	CCNNNNNNNGG	5 cut(s)	25, 73, 156, 1183, 1209
BseMI	GCAATG	2 cut(s)	242, 576
BseMII	CTCAG	3 cut(s)	288, 507, 786
BseNI	ACTGG	3 cut(s)	150, 284, 540
BseXI	GCAGC	3 cut(s)	49, 265, 834
BsgI	GTGCAG	1 cut(s)	668
Bsh1236I	CGCG	2 cut(s)	52, 310
BshFI	GGCC	3 cut(s)	404, 841, 1202
BsiHKAI	GWGCWC	3 cut(s)	18, 771, 1077
BsiHKCI	CYCGRG	1 cut(s)	66
BsiSI	CCGG	2 cut(s)	23, 1210
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	5 cut(s)	25, 73, 156, 1183, 1209
BsmAI	GTCTC	1 cut(s)	552
BsmFI	GGGAC	1 cut(s)	326
BsmI	GAATGC	1 cut(s)	1178
BsnI	GGCC	3 cut(s)	404, 841, 1202
BsoBI	CYCGRG	1 cut(s)	66
Bsp1286I	GDGCHC	3 cut(s)	18, 771, 1077
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	5 cut(s)	52, 87, 118, 310, 343
BspANI	GGCC	3 cut(s)	404, 841, 1202
BspCNI	CTCAG	3 cut(s)	287, 506, 787
BspFNI	CGCG	2 cut(s)	52, 310
BspQI	GCTCTTC	1 cut(s)	1082
BsrDI	GCAATG	2 cut(s)	242, 576
BsrI	ACTGG	3 cut(s)	150, 284, 540
BssECI	CCNNGG	2 cut(s)	405, 702
BssMI	GATC	1 cut(s)	172
BssNAI	GTATAC	1 cut(s)	306
BssT1I	CCWWGG	2 cut(s)	405, 702
Bst1107I	GTATAC	1 cut(s)	306
Bst4CI	ACNGT	2 cut(s)	170, 963
Bst6I	CTCTTC	1 cut(s)	1082
BstC8I	GCNNGC	2 cut(s)	767, 1010
BstDEI	CTNAG	8 cut(s)	56, 274, 493, 599, 795, 864, 980, 1116
BstF5I	GGATG	6 cut(s)	83, 262, 583, 820, 925, 1061
BstFNI	CGCG	2 cut(s)	52, 310
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 715
BstNSI	RCATGY	2 cut(s)	528, 1235
BstUI	CGCG	2 cut(s)	52, 310
BstV1I	GCAGC	3 cut(s)	49, 265, 834
BstZ17I	GTATAC	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	404, 841, 1202
BtsCI	GGATG	6 cut(s)	83, 262, 583, 820, 925, 1061
BtsI	GCAGTG	3 cut(s)	225, 519, 610
BtsIMutI	CAGTG	8 cut(s)	157, 225, 291, 519, 610, 792, 959, 1075
Cac8I	GCNNGC	2 cut(s)	767, 1010
Csp6I	GTAC	2 cut(s)	699, 1017
CviAII	CATG	6 cut(s)	301, 525, 835, 856, 1166, 1232
CviQI	GTAC	2 cut(s)	699, 1017
DdeI	CTNAG	8 cut(s)	56, 274, 493, 599, 795, 864, 980, 1116
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	2 cut(s)	839, 1200
Eam1104I	CTCTTC	1 cut(s)	1082
EarI	CTCTTC	1 cut(s)	1082
EciI	GGCGGA	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	1075
Eco130I	CCWWGG	2 cut(s)	405, 702
Eco24I	GRGCYC	1 cut(s)	1077
Eco32I	GATATC	2 cut(s)	622, 861
Eco53kI	GAGCTC	1 cut(s)	1075
Eco57I	CTGAAG	1 cut(s)	788
Eco88I	CYCGRG	1 cut(s)	66
EcoICRI	GAGCTC	1 cut(s)	1075
EcoRV	GATATC	2 cut(s)	622, 861
EcoT14I	CCWWGG	2 cut(s)	405, 702
EcoT22I	ATGCAT	1 cut(s)	1233
EcoT38I	GRGCYC	1 cut(s)	1077
ErhI	CCWWGG	2 cut(s)	405, 702
FaeI	CATG	6 cut(s)	304, 528, 838, 859, 1169, 1235
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	6 cut(s)	300, 524, 834, 855, 1165, 1231
FauI	CCCGC	1 cut(s)	303
FblI	GTMKAC	2 cut(s)	165, 305
Fnu4HI	GCNGC	4 cut(s)	53, 63, 279, 823
FokI	GGATG	6 cut(s)	70, 269, 590, 827, 932, 1068
FriOI	GRGCYC	1 cut(s)	1077
Fsp4HI	GCNGC	4 cut(s)	53, 63, 279, 823
GluI	GCNGC	4 cut(s)	53, 63, 279, 823
HaeIII	GGCC	3 cut(s)	404, 841, 1202
HapII	CCGG	2 cut(s)	23, 1210
Hin1II	CATG	6 cut(s)	304, 528, 838, 859, 1169, 1235
HindIII	AAGCTT	1 cut(s)	389
HinfI	GANTC	5 cut(s)	121, 662, 679, 799, 1240
HpaII	CCGG	2 cut(s)	23, 1210
HphI	GGTGA	3 cut(s)	116, 529, 797
Hpy166II	GTNNAC	2 cut(s)	166, 306
Hpy188I	TCNGA	7 cut(s)	201, 447, 577, 667, 807, 1084, 1153
Hpy188III	TCNNGA	2 cut(s)	560, 776
Hpy8I	GTNNAC	2 cut(s)	166, 306
HpyAV	CCTTC	2 cut(s)	29, 733
HpyCH4III	ACNGT	2 cut(s)	170, 963
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 715
HpyF3I	CTNAG	8 cut(s)	56, 274, 493, 599, 795, 864, 980, 1116
Hsp92II	CATG	6 cut(s)	304, 528, 838, 859, 1169, 1235
Kzo9I	GATC	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	1082
LmnI	GCTCC	3 cut(s)	13, 706, 774
Lsp1109I	GCAGC	3 cut(s)	49, 265, 834
LweI	GCATC	4 cut(s)	92, 498, 568, 1100
MaeIII	GTNAC	3 cut(s)	38, 421, 465
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	760, 794, 1069, 1181
MhlI	GDGCHC	3 cut(s)	18, 771, 1077
MlsI	TGGCCA	1 cut(s)	841
MluCI	AATT	7 cut(s)	145, 195, 246, 415, 649, 743, 874
MluNI	TGGCCA	1 cut(s)	841
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	6 cut(s)	103, 137, 876, 910, 916, 1116
Mox20I	TGGCCA	1 cut(s)	841
Mph1103I	ATGCAT	1 cut(s)	1233
MscI	TGGCCA	1 cut(s)	841
MseI	TTAA	5 cut(s)	360, 555, 878, 965, 992
MslI	CAYNNNNRTG	2 cut(s)	336, 833
Msp20I	TGGCCA	1 cut(s)	841
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	23, 1210
Mva1269I	GAATGC	1 cut(s)	1178
MvnI	CGCG	2 cut(s)	52, 310
MwoI	GCNNNNNNNGC	2 cut(s)	328, 715
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	6 cut(s)	304, 528, 838, 859, 1169, 1235
NmuCI	GTSAC	1 cut(s)	465
NsiI	ATGCAT	1 cut(s)	1233
NspI	RCATGY	2 cut(s)	528, 1235
PciSI	GCTCTTC	1 cut(s)	1082
PctI	GAATGC	1 cut(s)	1178
PfeI	GAWTC	4 cut(s)	121, 679, 799, 1240
PflMI	CCANNNNNTGG	2 cut(s)	156, 1183
PkrI	GCNGC	4 cut(s)	54, 64, 280, 824
PleI	GAGTC	1 cut(s)	670
PpsI	GAGTC	1 cut(s)	670
Psp124BI	GAGCTC	1 cut(s)	1077
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	2 cut(s)	700, 1018
RsaNI	GTAC	2 cut(s)	699, 1017
RseI	CAYNNNNRTG	2 cut(s)	336, 833
SacI	GAGCTC	1 cut(s)	1077
SapI	GCTCTTC	1 cut(s)	1082
SaqAI	TTAA	5 cut(s)	360, 555, 878, 965, 992
SatI	GCNGC	4 cut(s)	53, 63, 279, 823
Sau3AI	GATC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	671
SduI	GDGCHC	3 cut(s)	18, 771, 1077
SfaNI	GCATC	4 cut(s)	92, 498, 568, 1100
SmiMI	CAYNNNNRTG	2 cut(s)	336, 833
SmlI	CTYRAG	2 cut(s)	475, 674
SmoI	CTYRAG	2 cut(s)	475, 674
Sse9I	AATT	7 cut(s)	145, 195, 246, 415, 649, 743, 874
SsiI	CCGC	5 cut(s)	52, 87, 118, 310, 343
SstI	GAGCTC	1 cut(s)	1077
StyI	CCWWGG	2 cut(s)	405, 702
TaaI	ACNGT	2 cut(s)	170, 963
TaqI	TCGA	1 cut(s)	777
TasI	AATT	7 cut(s)	145, 195, 246, 415, 649, 743, 874
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	4 cut(s)	121, 679, 799, 1240
Tru1I	TTAA	5 cut(s)	360, 555, 878, 965, 992
Tru9I	TTAA	5 cut(s)	360, 555, 878, 965, 992
TscAI	CASTG	8 cut(s)	157, 232, 291, 526, 610, 799, 966, 1075
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	3 cut(s)	62, 278, 822
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	3 cut(s)	608, 643, 1182
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	8 cut(s)	157, 232, 291, 526, 610, 799, 966, 1075
Van91I	CCANNNNNTGG	2 cut(s)	156, 1183
XapI	RAATTY	2 cut(s)	195, 874
XceI	RCATGY	2 cut(s)	528, 1235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	291, 779
XmiI	GTMKAC	2 cut(s)	165, 305
Zsp2I	ATGCAT	1 cut(s)	1233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.