Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005659

Physical Location & Seq

Genomic Coordinates Forward (+)

25490911 .. 25493077

Gene Structure 2167 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G68000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTAAAAAGGAGAGACCTAGACCTGAGAAGTTGTCTGTGTATCTTTATATACCTAATATTGTTGGGTATATGAGAGTTCTCTTGAACTGTGTTGCTTTTGCTGTGTGTTTCTCCAACAAGCCACTTTTCTCTGTCCTTTATTTCTTCAGCTTTTGTTGTGATGCTGTGGATGGCTGGGTGGCTCGTAGATTCAACCAAGTTTCAACATTTGGAGCTGTTCTTGACATGGTCACAGATAGAGTTAGCACGGCTTGTCTTCTCGTGATTCTCTCTCAAATCTACAGGCCTAGTTTGGTCTTCCTCTCATTGCTGGCTTTAGATATTGCTAGTCATTGGCTGCAGATGTACAGTACGTTTCTAGCAGGGAAGAGCAGCCATAAGGATGTGAAAGACAGCACAAGCTGGCTTTTTAGACTCTACTATGGAAACCGGATATTTATGTGTTACTGCTGTGTTTCTTGCGAGGTTCTGTATATCATCCTTCTTCTCATTGCAAAGAACCAATCTGAAAATCTCCTGAATGTCGTAGTTGCTACATTAACACAGATTTCACCACTCTCTTTTCTCCTGGCTTTGACATTGTTCGGTTGGTCGATGAAGCAGACCATTAATGTCATTCAGATGAAAACTGCTGCAGACGTTTGTGTACTGTATGATATAGAGAAGCAGCAGAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003881 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko01100 ko04070 map00562 map00564 map01100 map04070

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

227

Amino Acids

25.86

Weight (kDa)

8.89

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	17 - 111	1.1e-14	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68000 AT4G38570 AT4G38570 AT4G38570 AT4G38570
fragaria_vesca	FvH4_2g13710 FvH4_2g13710 FvH4_2g13710 FvH4_2g14000
malus_domestica	MD05G1122300.v1.1 MD10G1124800.v1.1
prunus_persica	Prupe.7G263800_v2.0.a1
pyrus_communis	pycom05g11610 pycom10g10710
rosa_chinensis	RchiOBHm_Chr7g0224781
rosa_laevigata	RLG00000001854 RLG00000034638
rosa_multiflora	Rmu_sc0000144.1_g000011 Rmu_sc0010368.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234380 Rroxscaffold_3G00238490
rosa_rugosa	Rorug05G0250800 Rorug05G0250800 Rorug07G0225600 Rorug07G0225600
rosa_samantha	Rh5CG362500 Rh7CG396200
rosa_wichuraiana	Rw7G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	3 cut(s)	350, 355, 651
AgsI	TTSAA	3 cut(s)	88, 196, 207
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	3 cut(s)	153, 218, 405
AluI	AGCT	3 cut(s)	153, 218, 405
Alw26I	GTCTC	1 cut(s)	10
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	4 cut(s)	340, 375, 635, 670
AseI	ATTAAT	1 cut(s)	612
AsuHPI	GGTGA	1 cut(s)	546
BauI	CACGAG	1 cut(s)	263
BbsI	GAAGAC	2 cut(s)	251, 292
BbvI	GCAGC	3 cut(s)	327, 387, 622
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	267
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	10
BfaI	CTAG	4 cut(s)	21, 291, 330, 362
BfmI	CTRYAG	3 cut(s)	283, 341, 636
BisI	GCNGC	4 cut(s)	341, 376, 636, 671
BlsI	GCNGC	4 cut(s)	342, 377, 637, 672
Bme1390I	CCNGG	1 cut(s)	572
BmrFI	CCNGG	1 cut(s)	572
BmsI	GCATC	1 cut(s)	154
BpiI	GAAGAC	2 cut(s)	251, 292
BsaI	GGTCTC	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	432
Bse3DI	GCAATG	2 cut(s)	308, 492
BseBI	CCWGG	1 cut(s)	572
BseGI	GGATG	3 cut(s)	178, 391, 480
BseMI	GCAATG	2 cut(s)	308, 492
BseMII	CTCAG	1 cut(s)	18
BseXI	GCAGC	3 cut(s)	327, 387, 622
BseYI	CCCAGC	1 cut(s)	177
BshFI	GGCC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	433
BsmAI	GTCTC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	289
Bso31I	GGTCTC	1 cut(s)	10
Bsp1407I	TGTACA	1 cut(s)	348
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	19
BspMAI	CTGCAG	2 cut(s)	345, 640
BspQI	GCTCTTC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	10
BsrDI	GCAATG	2 cut(s)	308, 492
BsrGI	TGTACA	1 cut(s)	348
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	3 cut(s)	92, 353, 654
Bst6I	CTCTTC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	348
BstC8I	GCNNGC	2 cut(s)	315, 407
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	3 cut(s)	178, 391, 480
BstMAI	GTCTC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	676
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	3 cut(s)	283, 341, 636
BstV1I	GCAGC	3 cut(s)	327, 387, 622
BstV2I	GAAGAC	2 cut(s)	251, 292
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	178, 391, 480
Cac8I	GCNNGC	2 cut(s)	315, 407
Csp6I	GTAC	3 cut(s)	349, 354, 650
CviAII	CATG	1 cut(s)	229
CviQI	GTAC	3 cut(s)	349, 354, 650
DdeI	CTNAG	1 cut(s)	27
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
Eco147I	AGGCCT	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	570
FaeI	CATG	1 cut(s)	232
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	4 cut(s)	341, 376, 636, 671
FokI	GGATG	3 cut(s)	185, 398, 467
Fsp4HI	GCNGC	4 cut(s)	341, 376, 636, 671
FspBI	CTAG	4 cut(s)	21, 291, 330, 362
GluI	GCNGC	4 cut(s)	341, 376, 636, 671
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	433
Hin1II	CATG	1 cut(s)	232
HinfI	GANTC	3 cut(s)	192, 268, 417
HpaII	CCGG	1 cut(s)	433
HphI	GGTGA	1 cut(s)	546
Hpy166II	GTNNAC	1 cut(s)	650
Hpy188I	TCNGA	2 cut(s)	511, 624
Hpy188III	TCNNGA	4 cut(s)	85, 224, 265, 520
Hpy8I	GTNNAC	1 cut(s)	650
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	3 cut(s)	92, 353, 654
HpyCH4IV	ACGT	2 cut(s)	356, 642
HpyCH4V	TGCA	3 cut(s)	343, 497, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	676
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	2 cut(s)	356, 642
Hsp92II	CATG	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	365
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	3 cut(s)	327, 387, 622
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	4 cut(s)	21, 291, 330, 362
MaeII	ACGT	2 cut(s)	356, 642
MaeIII	GTNAC	2 cut(s)	232, 446
MboII	GAAGA	5 cut(s)	139, 251, 292, 382, 479
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	2 cut(s)	314, 460
MseI	TTAA	2 cut(s)	542, 612
MslI	CAYNNNNRTG	2 cut(s)	384, 623
MspI	CCGG	1 cut(s)	433
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	676
NlaIII	CATG	1 cut(s)	232
NmuCI	GTSAC	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	192, 268
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	342, 377, 637, 672
PleI	GAGTC	1 cut(s)	411
PpsI	GAGTC	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	570
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	570
PstI	CTGCAG	2 cut(s)	345, 640
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	3 cut(s)	350, 355, 651
RsaNI	GTAC	3 cut(s)	349, 354, 650
RseI	CAYNNNNRTG	2 cut(s)	384, 623
SapI	GCTCTTC	1 cut(s)	365
SaqAI	TTAA	2 cut(s)	542, 612
SatI	GCNGC	4 cut(s)	341, 376, 636, 671
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	1 cut(s)	572
SetI	ASST	9 cut(s)	22, 28, 58, 155, 220, 359, 407, 471, 645
SfaNI	GCATC	1 cut(s)	154
SfcI	CTRYAG	3 cut(s)	283, 341, 636
SmiMI	CAYNNNNRTG	2 cut(s)	384, 623
SseBI	AGGCCT	1 cut(s)	289
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	4 cut(s)	21, 291, 330, 362
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	3 cut(s)	92, 353, 654
TaiI	ACGT	2 cut(s)	359, 645
TaqI	TCGA	1 cut(s)	596
TatI	WGTACW	2 cut(s)	348, 649
TfiI	GAWTC	2 cut(s)	192, 268
Tru1I	TTAA	2 cut(s)	542, 612
Tru9I	TTAA	2 cut(s)	542, 612
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	4 cut(s)	340, 375, 635, 670
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	614, 641
Tth111I	GACNNNGTC	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	612
XspI	CTAG	4 cut(s)	21, 291, 330, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.