Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005659

Physical Location & Seq

Genomic Coordinates Forward (+)

22047610 .. 22050790

Gene Structure 3181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCCAAGAAATCTGTACCACAACCACGGCTAACAAAGCTTTCGGTCTACCTTTACATACCTAATATAATTGGGTTCATTAGGGTTCTCATGAACTGTTATGCTTTCACAATATGCTTCTCCAACAAACGACTTTTCTCCCTTCTCTATTTTTATATCTGCTTTGAAGAATTATTGTTGTACTTGGATTTGTGGATTCGGAAGAAGAGATTTGAAACGTATCATTCGATTCTTTTTCCTGATGCAGTTTCAACATTTGGAGCCGTTTTGGACATGGTAACAGACAGGATAAGCACTGCATGTCTCTTGGTAATTCTTTCACAAGTCTATCGGCCTGGCTTGATTTTCCTCTCGTTGCTTGCCTTAGATATTGGTAGCCACTGGCTGCAGATGTACAGTACTTTCCTGCTTGGCAAGGCTAGTCACAAAGATGTGAAAGATAGCACTAATTGGCTTTTTAAAGCATACTATGGGAATCGGATGTTTATGGCTTACTGTTGTGTGGCATGCGAGGTGCTTTATATCATTCTATTTCTTGTTGCAAAGAATGAAACTGAGAATGTGATTGAAGTTCTAATGGGTCTTGCACACCATATTACACCTCTTTCTGTTCTTGTTGGTTTGTGTTTATTTGGATGGTCAGTCAAACAAGCAATTAATTGTATACAGTTGAAGACAGCAGCAGATGTGTGCGTGCTTCATGATATCAACAAAAAGCAGAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003881 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko01100 ko04070 map00562 map00564 map01100 map04070

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

243

Amino Acids

27.76

Weight (kDa)

8.85

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68000 AT4G38570 AT4G38570 AT4G38570 AT4G38570
fragaria_vesca	FvH4_2g13710 FvH4_2g13710 FvH4_2g13710 FvH4_2g14000
malus_domestica	MD05G1122300.v1.1 MD10G1124800.v1.1
prunus_persica	Prupe.7G263800_v2.0.a1
pyrus_communis	pycom05g11610 pycom10g10710
rosa_chinensis	RchiOBHm_Chr7g0224781
rosa_laevigata	RLG00000001854 RLG00000034638
rosa_multiflora	Rmu_sc0000144.1_g000011 Rmu_sc0010368.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234380 Rroxscaffold_3G00238490
rosa_rugosa	Rorug05G0250800 Rorug05G0250800 Rorug07G0225600 Rorug07G0225600
rosa_samantha	Rh5CG362500 Rh7CG396200
rosa_wichuraiana	Rw7G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	48, 664
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	4 cut(s)	18, 182, 395, 400
AgsI	TTSAA	5 cut(s)	167, 215, 252, 569, 673
AjnI	CCWGG	1 cut(s)	334
AluBI	AGCT	1 cut(s)	40
AluI	AGCT	1 cut(s)	40
Alw26I	GTCTC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	3, 332
ApeKI	GCWGC	2 cut(s)	385, 680
AseI	ATTAAT	1 cut(s)	657
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	725
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	2 cut(s)	372, 692
BccI	CCATC	1 cut(s)	630
BceAI	ACGGC	2 cut(s)	44, 248
BciT130I	CCWGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	1 cut(s)	386
BisI	GCNGC	2 cut(s)	386, 681
BlsI	GCNGC	2 cut(s)	387, 682
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	336
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	386
BseBI	CCWGG	1 cut(s)	336
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	2 cut(s)	486, 641
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	372, 692
BshFI	GGCC	2 cut(s)	5, 334
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	5, 334
Bsp1286I	GDGCHC	1 cut(s)	725
Bsp1407I	TGTACA	1 cut(s)	393
BspANI	GGCC	2 cut(s)	5, 334
BspCNI	CTCAG	1 cut(s)	547
BspHI	TCATGA	2 cut(s)	90, 700
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	390
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	26
BssNAI	GTATAC	1 cut(s)	665
Bst1107I	GTATAC	1 cut(s)	665
Bst2UI	CCWGG	1 cut(s)	336
Bst4CI	ACNGT	4 cut(s)	98, 398, 497, 669
Bst6I	CTCTTC	1 cut(s)	200
BstAUI	TGTACA	1 cut(s)	393
BstC8I	GCNNGC	3 cut(s)	360, 508, 695
BstDEI	CTNAG	2 cut(s)	364, 555
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	2 cut(s)	486, 641
BstMAI	GTCTC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	336
BstNSI	RCATGY	2 cut(s)	303, 510
BstSCI	CCNGG	1 cut(s)	334
BstSFI	CTRYAG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	372, 692
BstV2I	GAAGAC	1 cut(s)	680
BstZ17I	GTATAC	1 cut(s)	665
BsuRI	GGCC	2 cut(s)	5, 334
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	2 cut(s)	486, 641
BtsI	GCAGTG	1 cut(s)	294
BtsIMutI	CAGTG	2 cut(s)	294, 379
Cac8I	GCNNGC	3 cut(s)	360, 508, 695
CciI	TCATGA	2 cut(s)	90, 700
Csp6I	GTAC	4 cut(s)	17, 181, 394, 399
CviAII	CATG	5 cut(s)	91, 274, 300, 507, 701
CviQI	GTAC	4 cut(s)	17, 181, 394, 399
DdeI	CTNAG	2 cut(s)	364, 555
DraI	TTTAAA	1 cut(s)	460
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	200
EarI	CTCTTC	1 cut(s)	200
Eco24I	GRGCYC	1 cut(s)	725
Eco32I	GATATC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	334
EcoRV	GATATC	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	725
FaeI	CATG	5 cut(s)	94, 277, 303, 510, 704
FatI	CATG	5 cut(s)	90, 273, 299, 506, 700
FblI	GTMKAC	2 cut(s)	48, 664
Fnu4HI	GCNGC	2 cut(s)	386, 681
FokI	GGATG	2 cut(s)	493, 648
FriOI	GRGCYC	1 cut(s)	725
Fsp4HI	GCNGC	2 cut(s)	386, 681
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	2 cut(s)	386, 681
HaeIII	GGCC	2 cut(s)	5, 334
Hin1II	CATG	5 cut(s)	94, 277, 303, 510, 704
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	3 cut(s)	196, 229, 475
Hpy166II	GTNNAC	2 cut(s)	49, 665
Hpy188I	TCNGA	2 cut(s)	201, 480
Hpy188III	TCNNGA	3 cut(s)	91, 239, 701
Hpy8I	GTNNAC	2 cut(s)	49, 665
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	4 cut(s)	98, 398, 497, 669
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	5 cut(s)	245, 299, 388, 542, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	364, 555
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	5 cut(s)	94, 277, 303, 510, 704
LmnI	GCTCC	1 cut(s)	260
LpnPI	CCDG	6 cut(s)	252, 271, 321, 348, 367, 419
Lsp1109I	GCAGC	2 cut(s)	372, 692
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	2 cut(s)	277, 422
MboII	GAAGA	4 cut(s)	179, 214, 217, 685
MhlI	GDGCHC	1 cut(s)	725
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	69, 170, 312, 448, 654, 658
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	359, 505, 612
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	459, 657
MslI	CAYNNNNRTG	1 cut(s)	429
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	336
MwoI	GCNNNNNNNGC	1 cut(s)	37
NlaIII	CATG	5 cut(s)	94, 277, 303, 510, 704
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	422
NspI	RCATGY	2 cut(s)	303, 510
PaeI	GCATGC	1 cut(s)	510
PagI	TCATGA	2 cut(s)	90, 700
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PfeI	GAWTC	3 cut(s)	196, 229, 475
PkrI	GCNGC	2 cut(s)	387, 682
PshBI	ATTAAT	1 cut(s)	657
Psp6I	CCWGG	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	334
PspN4I	GGNNCC	1 cut(s)	262
PstI	CTGCAG	1 cut(s)	390
RsaI	GTAC	4 cut(s)	18, 182, 395, 400
RsaNI	GTAC	4 cut(s)	17, 181, 394, 399
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	459, 657
SatI	GCNGC	2 cut(s)	386, 681
ScaI	AGTACT	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	336
SduI	GDGCHC	1 cut(s)	725
SetI	ASST	6 cut(s)	42, 54, 64, 221, 516, 604
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	386
SmiMI	CAYNNNNRTG	1 cut(s)	429
SphI	GCATGC	1 cut(s)	510
Sse9I	AATT	6 cut(s)	69, 170, 312, 448, 654, 658
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	334
TaaI	ACNGT	4 cut(s)	98, 398, 497, 669
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	1 cut(s)	227
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	6 cut(s)	69, 170, 312, 448, 654, 658
TatI	WGTACW	3 cut(s)	180, 393, 398
TfiI	GAWTC	3 cut(s)	196, 229, 475
Tru1I	TTAA	2 cut(s)	459, 657
Tru9I	TTAA	2 cut(s)	459, 657
TscAI	CASTG	2 cut(s)	301, 386
TseFI	GTSAC	1 cut(s)	422
TseI	GCWGC	2 cut(s)	385, 680
Tsp45I	GTSAC	1 cut(s)	422
TspDTI	ATGAA	4 cut(s)	67, 107, 564, 689
TspRI	CASTG	2 cut(s)	301, 386
VspI	ATTAAT	1 cut(s)	657
XceI	RCATGY	2 cut(s)	303, 510
XmiI	GTMKAC	2 cut(s)	48, 664
XspI	CTAG	1 cut(s)	420
ZrmI	AGTACT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.