Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005659

Physical Location & Seq

Genomic Coordinates Forward (+)

20438816 .. 20442215

Gene Structure 3400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1124800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTAAGAAATCTGTAGCTCAACGAAGGCTAACGAAACTCGATGTCTATCTTTACATACCCAACATTATTGGGTACATAAGGGTTCTTATGAACTGTTTTGCCTTTGCCCTATGCTTCTCCAACAAGAAGCTTTTCTCTGTTCTCTATTTCGTCAGCTTTGTCTGCGATGGGGTAGATGGTTGGTGTGCTCGCAAATTCAACCAAGTTTCTACCTTTGGAGCTGTTTTGGACATGGTAACAGACAGGATAAGCACTGCGTGTCTCTTGGTAGTACTTTCACAAGTTTACCGGCCTGGCTTGGTTTTCCTCTCATTACTTGCCTTAGATATTGGTAGCCACTGGCTGCAGATGTACAGTACTTTTCTGTTAGGCAAGGCTAGTCACAAAGATGTGAAAGACAGCACTAATTGGCTTTTTAAAGCATACTACGGAAATCGGATGTTTATGGCTTACTGTTGTGTGGCATGTGAGGTCCTTTATATAATTCTATTTCTTCTTGCAAAGAACGAAACTGAGAACTTGATTGATGTTTTAACGGGGCTTGCAAAGCATATTACACCACTTTCTGTTCTAGTTGGTTTGAGTTTATTTGGATGGGCAGTCAAACAAGCAGTGAATCTTATACAGGTAATGAATACCACTTCTATAATGTTAGGCATTTTAACTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003881 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko01100 ko04070 map00562 map00564 map01100 map04070

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

225

Amino Acids

25.17

Weight (kDa)

9.04

Isoelectric Point (pI)

26.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	19 - 118	1.3e-15	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68000 AT4G38570 AT4G38570 AT4G38570 AT4G38570
fragaria_vesca	FvH4_2g13710 FvH4_2g13710 FvH4_2g13710 FvH4_2g14000
malus_domestica	MD05G1122300.v1.1 MD10G1124800.v1.1
prunus_persica	Prupe.7G263800_v2.0.a1
pyrus_communis	pycom05g11610 pycom10g10710
rosa_chinensis	RchiOBHm_Chr7g0224781
rosa_laevigata	RLG00000001854 RLG00000034638
rosa_multiflora	Rmu_sc0000144.1_g000011 Rmu_sc0010368.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234380 Rroxscaffold_3G00238490
rosa_rugosa	Rorug05G0250800 Rorug05G0250800 Rorug07G0225600 Rorug07G0225600
rosa_samantha	Rh5CG362500 Rh7CG396200
rosa_wichuraiana	Rw7G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	77, 276, 356, 361
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	4 cut(s)	20, 133, 159, 224
AluI	AGCT	4 cut(s)	20, 133, 159, 224
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	293
ApeKI	GCWGC	1 cut(s)	346
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	333
BccI	CCATC	3 cut(s)	164, 173, 591
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	2 cut(s)	381, 575
BfmI	CTRYAG	2 cut(s)	15, 347
BisI	GCNGC	1 cut(s)	347
BlsI	GCNGC	1 cut(s)	348
BmcAI	AGTACT	2 cut(s)	276, 361
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	48
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	447, 602
BseJI	GATNNNNATC	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	1 cut(s)	333
BshFI	GGCC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	1 cut(s)	292
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	354
BspANI	GGCC	1 cut(s)	295
BspCNI	CTCAG	1 cut(s)	508
BspMAI	CTGCAG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	98, 359, 458
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	193, 546
BstDEI	CTNAG	3 cut(s)	6, 325, 516
BstF5I	GGATG	2 cut(s)	447, 602
BstMAI	GTCTC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	165, 550
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	2 cut(s)	15, 347
BstV1I	GCAGC	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	295
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	447, 602
BtsI	GCAGTG	2 cut(s)	255, 621
BtsIMutI	CAGTG	3 cut(s)	255, 340, 621
Cac8I	GCNNGC	2 cut(s)	193, 546
Cfr10I	RCCGGY	1 cut(s)	291
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	4 cut(s)	76, 275, 355, 360
CviAII	CATG	2 cut(s)	235, 468
CviQI	GTAC	4 cut(s)	76, 275, 355, 360
DdeI	CTNAG	3 cut(s)	6, 325, 516
DraI	TTTAAA	1 cut(s)	421
DraIII	CACNNNGTG	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	475
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	238, 471
FatI	CATG	2 cut(s)	234, 467
Fnu4HI	GCNGC	1 cut(s)	347
FokI	GGATG	2 cut(s)	454, 609
Fsp4HI	GCNGC	1 cut(s)	347
FspBI	CTAG	2 cut(s)	381, 575
GluI	GCNGC	1 cut(s)	347
HaeIII	GGCC	1 cut(s)	295
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	2 cut(s)	238, 471
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	619
HpaII	CCGG	1 cut(s)	292
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	441
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	3 cut(s)	98, 359, 458
HpyCH4V	TGCA	3 cut(s)	349, 503, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	165, 550
HpyF3I	CTNAG	3 cut(s)	6, 325, 516
Hsp92II	CATG	2 cut(s)	238, 471
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	6 cut(s)	232, 282, 305, 309, 328, 614
Lsp1109I	GCAGC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	381, 575
MaeIII	GTNAC	2 cut(s)	238, 383
MboII	GAAGA	1 cut(s)	488
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	3 cut(s)	197, 409, 486
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	320, 466
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	3 cut(s)	420, 536, 665
MslI	CAYNNNNRTG	1 cut(s)	390
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	2 cut(s)	165, 550
NlaIII	CATG	2 cut(s)	238, 471
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	471
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	1 cut(s)	619
PkrI	GCNGC	1 cut(s)	348
PpuMI	RGGWCCY	1 cut(s)	475
Psp5II	RGGWCCY	1 cut(s)	475
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	475
PspPPI	RGGWCCY	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	351
RsaI	GTAC	4 cut(s)	77, 276, 356, 361
RsaNI	GTAC	4 cut(s)	76, 275, 355, 360
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	420, 536, 665
SatI	GCNGC	1 cut(s)	347
Sau96I	GGNCC	1 cut(s)	475
ScaI	AGTACT	2 cut(s)	276, 361
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	7 cut(s)	22, 135, 161, 218, 226, 477, 633
SfcI	CTRYAG	2 cut(s)	15, 347
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	3 cut(s)	197, 409, 486
SspMI	CTAG	2 cut(s)	381, 575
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	3 cut(s)	98, 359, 458
TaqI	TCGA	1 cut(s)	42
TasI	AATT	3 cut(s)	197, 409, 486
TatI	WGTACW	3 cut(s)	274, 354, 359
TfiI	GAWTC	1 cut(s)	619
Tru1I	TTAA	3 cut(s)	420, 536, 665
Tru9I	TTAA	3 cut(s)	420, 536, 665
TscAI	CASTG	3 cut(s)	262, 347, 621
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	1 cut(s)	346
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	107, 650
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	3 cut(s)	262, 347, 621
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	1 cut(s)	471
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	381, 575
ZrmI	AGTACT	2 cut(s)	276, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.