Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005659

Physical Location & Seq

Genomic Coordinates Reverse (-)

24482226 .. 24485888

Gene Structure 3663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1122300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCCAAGAAATCTGTAGCTCAACGAAGGCTAACGAAACTCGATGTCTATCTTTATATACCCAATATAATTGGGTACATAAGGGTTCTTATGAACTGTTTTGCCTTTGCCCAATGCTTCTCCAACAAGCAGCTTTTCTCCGTTCTCTATTTCATCAGCTTTGTCTGTGATGGCATTGATGGTTGGTGTGCTCGCAAATTCAACCAAGTTTCGACTTTTGGAGCTGTTTTGGACATGGTAACAGACAGGATAAGCACTGCGTGTCTATTGGTAGTACTTTCACAAGTATACCGGCCTGGCTTGGTTTTCCTTTCATTACTTGCCTTAGATATTGCCAGCCACTGGCTGCAGATGTACAGTACTTTCCTGTTAGGCAAGGCTAGTCACAAAGATGTGAAAGACAGCACTAATTGGCTTTTTAAAGCATACTACGGAAACCGGATGTTTATGGCTTACTGTTGTGTGGCATGTGAGGTGCTTTATATAATTCTATTTCTTCTTGCAAAGAACGAAACTGAGAATTTGATTGCTGTTTTAATGGGTCTTGCAAAGCATATTACACCTCTTTCTGTTCTAGTTGGTTTGAGTTTATTTGGATGGGCAGTCAAGCAAGCTGTTAATCTTATACAGTTGAAGACAGCAGCAGATGTGTGCGTGCTTCATGACATCAACAAAAAGCAAAGCCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003881 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko01100 ko04070 map00562 map00564 map01100 map04070

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

230

Amino Acids

25.79

Weight (kDa)

9.12

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	19 - 151	2.7e-15	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68000 AT4G38570 AT4G38570 AT4G38570 AT4G38570
fragaria_vesca	FvH4_2g13710 FvH4_2g13710 FvH4_2g13710 FvH4_2g14000
malus_domestica	MD05G1122300.v1.1 MD10G1124800.v1.1
prunus_persica	Prupe.7G263800_v2.0.a1
pyrus_communis	pycom05g11610 pycom10g10710
rosa_chinensis	RchiOBHm_Chr7g0224781
rosa_laevigata	RLG00000001854 RLG00000034638
rosa_multiflora	Rmu_sc0000144.1_g000011 Rmu_sc0010368.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234380 Rroxscaffold_3G00238490
rosa_rugosa	Rorug05G0250800 Rorug05G0250800 Rorug07G0225600 Rorug07G0225600
rosa_samantha	Rh5CG362500 Rh7CG396200
rosa_wichuraiana	Rw7G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	342
AccI	GTMKAC	1 cut(s)	288
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	197, 520
AdeI	CACNNNGTG	1 cut(s)	261
AfaI	GTAC	4 cut(s)	77, 276, 356, 361
AfiI	CCNNNNNNNGG	1 cut(s)	342
AgsI	TTSAA	2 cut(s)	202, 634
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	5 cut(s)	20, 133, 159, 224, 614
AluI	AGCT	5 cut(s)	20, 133, 159, 224, 614
Alw21I	GWGCWC	1 cut(s)	193
AlwNI	CAGNNNCTG	1 cut(s)	342
AoxI	GGCC	2 cut(s)	3, 293
ApeKI	GCWGC	3 cut(s)	130, 346, 641
ApoI	RAATTY	2 cut(s)	197, 520
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	142, 333, 653
BccI	CCATC	3 cut(s)	164, 173, 591
BciT130I	CCWGG	1 cut(s)	297
BfaI	CTAG	2 cut(s)	381, 575
BfmI	CTRYAG	2 cut(s)	15, 347
BisI	GCNGC	3 cut(s)	131, 347, 642
BlsI	GCNGC	3 cut(s)	132, 348, 643
BmcAI	AGTACT	2 cut(s)	276, 361
Bme1390I	CCNGG	1 cut(s)	297
BmrFI	CCNGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	641
BsaBI	GATNNNNATC	1 cut(s)	48
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	1 cut(s)	342
Bse118I	RCCGGY	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	347
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	297
BseGI	GGATG	2 cut(s)	447, 602
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	3 cut(s)	142, 333, 653
BshFI	GGCC	2 cut(s)	5, 295
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	2 cut(s)	292, 439
BslI	CCNNNNNNNGG	1 cut(s)	342
BsnI	GGCC	2 cut(s)	5, 295
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	354
BspANI	GGCC	2 cut(s)	5, 295
BspCNI	CTCAG	1 cut(s)	508
BspHI	TCATGA	1 cut(s)	661
BspMAI	CTGCAG	1 cut(s)	351
BsrFI	RCCGGY	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	347
BssAI	RCCGGY	1 cut(s)	291
BssNAI	GTATAC	1 cut(s)	289
Bst1107I	GTATAC	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	4 cut(s)	98, 359, 458, 630
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	4 cut(s)	193, 337, 612, 656
BstDEI	CTNAG	2 cut(s)	325, 516
BstF5I	GGATG	2 cut(s)	447, 602
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	2 cut(s)	15, 347
BstV1I	GCAGC	3 cut(s)	142, 333, 653
BstV2I	GAAGAC	1 cut(s)	641
BstZ17I	GTATAC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	5, 295
BtsCI	GGATG	2 cut(s)	447, 602
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 340
Cac8I	GCNNGC	4 cut(s)	193, 337, 612, 656
CaiI	CAGNNNCTG	1 cut(s)	342
CciI	TCATGA	1 cut(s)	661
Cfr10I	RCCGGY	1 cut(s)	291
Csp6I	GTAC	4 cut(s)	76, 275, 355, 360
CviAII	CATG	3 cut(s)	235, 468, 662
CviQI	GTAC	4 cut(s)	76, 275, 355, 360
DdeI	CTNAG	2 cut(s)	325, 516
DraI	TTTAAA	1 cut(s)	421
DraIII	CACNNNGTG	1 cut(s)	261
EaeI	YGGCCR	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	295
FaeI	CATG	3 cut(s)	238, 471, 665
FatI	CATG	3 cut(s)	234, 467, 661
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	131, 347, 642
FokI	GGATG	2 cut(s)	454, 609
Fsp4HI	GCNGC	3 cut(s)	131, 347, 642
FspBI	CTAG	2 cut(s)	381, 575
GluI	GCNGC	3 cut(s)	131, 347, 642
HaeIII	GGCC	2 cut(s)	5, 295
HapII	CCGG	2 cut(s)	292, 439
Hin1II	CATG	3 cut(s)	238, 471, 665
HpaII	CCGG	2 cut(s)	292, 439
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188III	TCNNGA	1 cut(s)	662
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	4 cut(s)	98, 359, 458, 630
HpyCH4V	TGCA	3 cut(s)	349, 503, 548
HpyF3I	CTNAG	2 cut(s)	325, 516
Hsp92II	CATG	3 cut(s)	238, 471, 665
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	8 cut(s)	232, 282, 305, 309, 328, 349, 380, 452
Lsp1109I	GCAGC	3 cut(s)	142, 333, 653
MaeI	CTAG	2 cut(s)	381, 575
MaeIII	GTNAC	2 cut(s)	238, 383
MboII	GAAGA	2 cut(s)	488, 646
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	69, 197, 409, 486, 520
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	2 cut(s)	466, 573
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	420, 536, 618
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	292, 439
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
NlaIII	CATG	3 cut(s)	238, 471, 665
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	1 cut(s)	471
PagI	TCATGA	1 cut(s)	661
PflMI	CCANNNNNTGG	1 cut(s)	342
PkrI	GCNGC	3 cut(s)	132, 348, 643
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PstI	CTGCAG	1 cut(s)	351
PstNI	CAGNNNCTG	1 cut(s)	342
RsaI	GTAC	4 cut(s)	77, 276, 356, 361
RsaNI	GTAC	4 cut(s)	76, 275, 355, 360
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	3 cut(s)	420, 536, 618
SatI	GCNGC	3 cut(s)	131, 347, 642
ScaI	AGTACT	2 cut(s)	276, 361
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	7 cut(s)	22, 135, 161, 226, 477, 565, 616
SfcI	CTRYAG	2 cut(s)	15, 347
SmiMI	CAYNNNNRTG	1 cut(s)	390
Sse9I	AATT	5 cut(s)	69, 197, 409, 486, 520
SspMI	CTAG	2 cut(s)	381, 575
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	4 cut(s)	98, 359, 458, 630
TaqI	TCGA	2 cut(s)	42, 212
TasI	AATT	5 cut(s)	69, 197, 409, 486, 520
TatI	WGTACW	3 cut(s)	274, 354, 359
Tru1I	TTAA	3 cut(s)	420, 536, 618
Tru9I	TTAA	3 cut(s)	420, 536, 618
TscAI	CASTG	2 cut(s)	262, 347
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	3 cut(s)	130, 346, 641
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	4 cut(s)	107, 142, 303, 650
TspGWI	ACGGA	2 cut(s)	130, 447
TspRI	CASTG	2 cut(s)	262, 347
Van91I	CCANNNNNTGG	1 cut(s)	342
XapI	RAATTY	2 cut(s)	197, 520
XceI	RCATGY	1 cut(s)	471
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	2 cut(s)	381, 575
ZrmI	AGTACT	2 cut(s)	276, 361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.