Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005659

Physical Location & Seq

Genomic Coordinates Reverse (-)

18031279 .. 18033599

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G38570.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCTAAACAGAGACCGGCGACGTTGTCAGTCTACCTCTACATTCCCAATATCGTTGGGTACATGAGAGTTCTCTTGAACTGCATTGCCTTCTCTGTGTGCTTCTCCAACAAGACACTCTTCTCCCTCTTGTACTTTTTCAGTTTTTGTTGTGATGCTGTGGATGGATGGTGCGCTCGTAAATTTAACCAAGTCTCTACATTTGGAGCTGTTTTGGATATGGTTACAGATAGAGTCAGCACAGCCTGTCTTCTCGTGATTCTCTCCCAGATATACAGGCCTAGCTTGGTTTTCCTGTCATTGCTGGCTTTAGATATCGCTAGTCACTGGCTGCAAATGTACAGTACCTTCCTATCAGGGAAGACCAGCCATAAGGATGTGAAAGATAGCACGAGCTGGCTCTTTAGACTCTATTATGGAAACCGGATGTTCATGGGTTATTGCTGTGTTTCCTGCGAGGTTCTTTATATAATCCTTCTTCTCATAGCAACGAACCAAACCGAAAACTTGATGAACGTGGTAGTGAAATCATTGATGCAGATTTCACCGCTCTCTTTACTCTTGGCTTTGAGCATATTTGGTTGGTCCATCAAGCAGATCATCAATGTGATTCAGATGAAAACGGCTGCAGATGTTTGTGTCCTGTATGACATAGAGAAACAGCATAAGAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003881 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko01100 ko04070 map00562 map00564 map01100 map04070

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

225

Amino Acids

25.58

Weight (kDa)

8.89

Isoelectric Point (pI)

34.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	14 - 108	3e-14	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68000 AT4G38570 AT4G38570 AT4G38570 AT4G38570
fragaria_vesca	FvH4_2g13710 FvH4_2g13710 FvH4_2g13710 FvH4_2g14000
malus_domestica	MD05G1122300.v1.1 MD10G1124800.v1.1
prunus_persica	Prupe.7G263800_v2.0.a1
pyrus_communis	pycom05g11610 pycom10g10710
rosa_chinensis	RchiOBHm_Chr7g0224781
rosa_laevigata	RLG00000001854 RLG00000034638
rosa_multiflora	Rmu_sc0000144.1_g000011 Rmu_sc0010368.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234380 Rroxscaffold_3G00238490
rosa_rugosa	Rorug05G0250800 Rorug05G0250800 Rorug07G0225600 Rorug07G0225600
rosa_samantha	Rh5CG362500 Rh7CG396200
rosa_wichuraiana	Rw7G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	548
AcsI	RAATTY	1 cut(s)	182
AfaI	GTAC	4 cut(s)	62, 134, 341, 346
AgsI	TTSAA	1 cut(s)	79
AluBI	AGCT	3 cut(s)	209, 285, 396
AluI	AGCT	3 cut(s)	209, 285, 396
Alw26I	GTCTC	2 cut(s)	7, 199
AoxI	GGCC	1 cut(s)	278
ApeKI	GCWGC	2 cut(s)	331, 626
ApoI	RAATTY	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	585
AsuHPI	GGTGA	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	585
BarI	GAAGNNNNNNTAC	2 cut(s)	332, 364
BauI	CACGAG	2 cut(s)	254, 391
BbsI	GAAGAC	2 cut(s)	242, 368
BbvI	GCAGC	2 cut(s)	318, 613
BccI	CCATC	3 cut(s)	158, 162, 596
BceAI	ACGGC	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	7, 199
BfaI	CTAG	2 cut(s)	282, 321
BfmI	CTRYAG	1 cut(s)	627
BisI	GCNGC	2 cut(s)	332, 627
BlsI	GCNGC	2 cut(s)	333, 628
Bme18I	GGWCC	1 cut(s)	585
BmgT120I	GGNCC	1 cut(s)	585
BmsI	GCATC	2 cut(s)	145, 525
BpiI	GAAGAC	2 cut(s)	242, 368
BsaI	GGTCTC	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	423
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	2 cut(s)	84, 299
BseGI	GGATG	4 cut(s)	169, 173, 382, 432
BseMI	GCAATG	2 cut(s)	84, 299
BseNI	ACTGG	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	318, 613
BshFI	GGCC	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	17, 424
BsmAI	GTCTC	2 cut(s)	7, 199
BsnI	GGCC	1 cut(s)	280
Bso31I	GGTCTC	1 cut(s)	7
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	1 cut(s)	597
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	1 cut(s)	280
BspMAI	CTGCAG	1 cut(s)	631
BspTNI	GGTCTC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	550
BsrDI	GCAATG	2 cut(s)	84, 299
BsrFI	RCCGGY	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	1 cut(s)	597
BssSI	CACGAG	2 cut(s)	254, 391
Bst2BI	CACGAG	2 cut(s)	254, 391
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	2 cut(s)	306, 398
BstF5I	GGATG	4 cut(s)	169, 173, 382, 432
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	1 cut(s)	600
BstMAI	GTCTC	2 cut(s)	7, 199
BstMBI	GATC	1 cut(s)	597
BstMWI	GCNNNNNNNGC	1 cut(s)	670
BstSFI	CTRYAG	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	318, 613
BstV2I	GAAGAC	2 cut(s)	242, 368
BsuRI	GGCC	1 cut(s)	280
BtsCI	GGATG	4 cut(s)	169, 173, 382, 432
BtsIMutI	CAGTG	1 cut(s)	325
Cac8I	GCNNGC	2 cut(s)	306, 398
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	585
Csp6I	GTAC	4 cut(s)	61, 133, 340, 345
CviAII	CATG	2 cut(s)	64, 433
CviQI	GTAC	4 cut(s)	61, 133, 340, 345
DpnI	GATC	1 cut(s)	599
DpnII	GATC	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	7
Eco32I	GATATC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	316
FaeI	CATG	2 cut(s)	67, 436
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FatI	CATG	2 cut(s)	63, 432
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	332, 627
FokI	GGATG	4 cut(s)	176, 180, 389, 439
Fsp4HI	GCNGC	2 cut(s)	332, 627
FspBI	CTAG	2 cut(s)	282, 321
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	2 cut(s)	332, 627
HaeIII	GGCC	1 cut(s)	280
HapII	CCGG	2 cut(s)	17, 424
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	2 cut(s)	67, 436
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HinfI	GANTC	4 cut(s)	234, 259, 408, 610
HpaII	CCGG	2 cut(s)	17, 424
HphI	GGTGA	1 cut(s)	537
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	615
Hpy188III	TCNNGA	2 cut(s)	76, 256
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	100, 358, 485
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	2 cut(s)	23, 516
HpyCH4V	TGCA	4 cut(s)	84, 334, 538, 629
HpyF10VI	GCNNNNNNNGC	1 cut(s)	670
HpySE526I	ACGT	2 cut(s)	23, 516
Hsp92II	CATG	2 cut(s)	67, 436
HspAI	GCGC	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	597
LmnI	GCTCC	1 cut(s)	206
Lsp1109I	GCAGC	2 cut(s)	318, 613
LweI	GCATC	2 cut(s)	145, 525
MaeI	CTAG	2 cut(s)	282, 321
MaeII	ACGT	2 cut(s)	23, 516
MaeIII	GTNAC	2 cut(s)	223, 323
MalI	GATC	1 cut(s)	599
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	1 cut(s)	597
MboII	GAAGA	4 cut(s)	112, 242, 373, 470
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	2 cut(s)	243, 402
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	3 cut(s)	47, 137, 451
MseI	TTAA	1 cut(s)	186
MslI	CAYNNNNRTG	2 cut(s)	375, 605
MspI	CCGG	2 cut(s)	17, 424
MwoI	GCNNNNNNNGC	1 cut(s)	670
NdeII	GATC	1 cut(s)	597
NlaIII	CATG	2 cut(s)	67, 436
NmuCI	GTSAC	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	280
PfeI	GAWTC	2 cut(s)	259, 610
PflFI	GACNNNGTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	333, 628
PleI	GAGTC	2 cut(s)	242, 402
PpsI	GAGTC	2 cut(s)	242, 402
PspPI	GGNCC	1 cut(s)	585
PstI	CTGCAG	1 cut(s)	631
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	4 cut(s)	62, 134, 341, 346
RsaNI	GTAC	4 cut(s)	61, 133, 340, 345
RseI	CAYNNNNRTG	2 cut(s)	375, 605
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	332, 627
Sau3AI	GATC	1 cut(s)	597
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	2 cut(s)	243, 402
SetI	ASST	8 cut(s)	26, 39, 211, 287, 350, 398, 462, 519
SfaNI	GCATC	2 cut(s)	145, 525
SfcI	CTRYAG	1 cut(s)	627
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	375, 605
Sse9I	AATT	1 cut(s)	182
SseBI	AGGCCT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	2 cut(s)	282, 321
StuI	AGGCCT	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	2 cut(s)	26, 519
TasI	AATT	1 cut(s)	182
TatI	WGTACW	2 cut(s)	132, 339
TfiI	GAWTC	2 cut(s)	259, 610
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	332
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	2 cut(s)	331, 626
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	3 cut(s)	421, 527, 632
TspRI	CASTG	1 cut(s)	332
Tth111I	GACNNNGTC	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	585
XapI	RAATTY	1 cut(s)	182
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	2 cut(s)	282, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.