Rw7G031360

CDP-diacylglycerol-inositol 3-phosphatidyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0005659
Physical Location & Seq
Reverse (-)
44868291 .. 44871509
3219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031360.1

Sequence Viewer

Length: 690 bp
ATGGCCAAGAAATCGGTACCACAACCACGGCTAACAAAGCTTTCGGTCTATCTTTACATTCCCAATATAATTGGGTACATTAGGGTTCTCATGAACTGTTATGCTTTCGCCATATGCTTCTCCAACAAACGACTTTTCTCCCTTCTCTATTTTGTCAGCTTTGTCTGTGATGGAGTAGATGGTTGGTGTGCTCGCAAATTCAATCAAGTTTCAACATTTGGAGCCGTTTTAGACATGGTAACAGACAGGATAAGCACTGCATGTCTCTTGGTAATTCTTTCACAAGTCTATCGGCCTGGCTTGATTTTCCTCTCGTTGCTTGCCTTAGATATTGGTAGCCACTGGCTGCAGATGTACAGTACTTTCCTGCTTGGCAAGGCTAGTCACAAAGATGTGAAAGATAGCACTAATTGGCTTTTTAAAGCATACTATGGGAATCGGATGTTTATGGCTTACTGTTGTGTGGCATGTGAGGTGCTTTATATCATTCTGTTTCTTGTTGCAAAGAATGAAACTGAGAATGTGATTGAAGTTCTAATGGGTCTTGCACACCATATTACACCTCTTTCTGTTCTTGTTGGTTTGTGTTTATTTGGATGGGCGGTCAAACAAGCAATTAATTGTATACAGTTGAAGACAGCAGCAGATGTGTGTGTGCTTCATGATATCAACAAAAAGCAGAGCCCATAA

Protein Analysis

229

Amino Acids

25.82

Weight (kDa)

8.93

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDP-OH_P_transf PF01066 19 - 109 1e-16 CDP-alcohol phosphatidyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 625
AciI CCGC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 197
AfaI GTAC 4 cut(s) 18, 77, 356, 361
AgsI TTSAA 4 cut(s) 202, 213, 530, 634
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 2 cut(s) 40, 159
AluI AGCT 2 cut(s) 40, 159
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 1 cut(s) 269
AoxI GGCC 2 cut(s) 3, 293
ApeKI GCWGC 2 cut(s) 346, 641
ApoI RAATTY 1 cut(s) 197
AseI ATTAAT 1 cut(s) 618
Asp718I GGTACC 1 cut(s) 16
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 686
BbsI GAAGAC 1 cut(s) 641
Bbv12I GWGCWC 1 cut(s) 193
BbvI GCAGC 2 cut(s) 333, 653
BccI CCATC 3 cut(s) 164, 173, 591
BceAI ACGGC 2 cut(s) 44, 209
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 347
BisI GCNGC 2 cut(s) 347, 642
BlsI GCNGC 2 cut(s) 348, 643
BmcAI AGTACT 1 cut(s) 361
Bme1390I CCNGG 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 18, 223
BmrFI CCNGG 1 cut(s) 297
BpiI GAAGAC 1 cut(s) 641
BsaJI CCNNGG 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 347
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 447, 602
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 333, 653
BshFI GGCC 2 cut(s) 5, 295
BshNI GGYRCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 269
BsnI GGCC 2 cut(s) 5, 295
Bsp1286I GDGCHC 2 cut(s) 193, 686
Bsp1407I TGTACA 1 cut(s) 354
BspACI CCGC 1 cut(s) 602
BspANI GGCC 2 cut(s) 5, 295
BspCNI CTCAG 1 cut(s) 508
BspHI TCATGA 2 cut(s) 90, 661
BspLI GGNNCC 2 cut(s) 18, 223
BspMAI CTGCAG 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 26
BssNAI GTATAC 1 cut(s) 626
Bst1107I GTATAC 1 cut(s) 626
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 4 cut(s) 98, 359, 458, 630
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 193, 321
BstDEI CTNAG 2 cut(s) 325, 516
BstDSI CCRYGG 1 cut(s) 26
BstF5I GGATG 2 cut(s) 447, 602
BstMAI GTCTC 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 297
BstNSI RCATGY 2 cut(s) 264, 471
BstSCI CCNGG 1 cut(s) 295
BstSFI CTRYAG 1 cut(s) 347
BstV1I GCAGC 2 cut(s) 333, 653
BstV2I GAAGAC 1 cut(s) 641
BstZ17I GTATAC 1 cut(s) 626
BsuRI GGCC 2 cut(s) 5, 295
BtgI CCRYGG 1 cut(s) 26
BtsCI GGATG 2 cut(s) 447, 602
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 255, 340
Cac8I GCNNGC 2 cut(s) 193, 321
CciI TCATGA 2 cut(s) 90, 661
Csp6I GTAC 4 cut(s) 17, 76, 355, 360
CviAII CATG 5 cut(s) 91, 235, 261, 468, 662
CviQI GTAC 4 cut(s) 17, 76, 355, 360
DdeI CTNAG 2 cut(s) 325, 516
DraI TTTAAA 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 686
Eco32I GATATC 1 cut(s) 667
EcoRII CCWGG 1 cut(s) 295
EcoRV GATATC 1 cut(s) 667
EcoT38I GRGCYC 1 cut(s) 686
FaeI CATG 5 cut(s) 94, 238, 264, 471, 665
FatI CATG 5 cut(s) 90, 234, 260, 467, 661
FauNDI CATATG 1 cut(s) 113
FblI GTMKAC 1 cut(s) 625
Fnu4HI GCNGC 2 cut(s) 347, 642
FokI GGATG 2 cut(s) 454, 609
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 2 cut(s) 347, 642
FspBI CTAG 1 cut(s) 381
GluI GCNGC 2 cut(s) 347, 642
HaeIII GGCC 2 cut(s) 5, 295
Hin1II CATG 5 cut(s) 94, 238, 264, 471, 665
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 1 cut(s) 436
Hpy166II GTNNAC 1 cut(s) 626
Hpy188I TCNGA 1 cut(s) 441
Hpy188III TCNNGA 2 cut(s) 91, 662
Hpy8I GTNNAC 1 cut(s) 626
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 4 cut(s) 98, 359, 458, 630
HpyCH4V TGCA 4 cut(s) 260, 349, 503, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 2 cut(s) 325, 516
Hsp92II CATG 5 cut(s) 94, 238, 264, 471, 665
KpnI GGTACC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 5 cut(s) 232, 282, 309, 328, 380
Lsp1109I GCAGC 2 cut(s) 333, 653
MaeI CTAG 1 cut(s) 381
MaeIII GTNAC 2 cut(s) 238, 383
MboII GAAGA 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 193, 686
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 6 cut(s) 69, 197, 273, 409, 615, 619
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 3 cut(s) 320, 466, 573
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 420, 618
MslI CAYNNNNRTG 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 113
NlaIII CATG 5 cut(s) 94, 238, 264, 471, 665
NlaIV GGNNCC 2 cut(s) 18, 223
NmuCI GTSAC 1 cut(s) 383
NspI RCATGY 2 cut(s) 264, 471
PagI TCATGA 2 cut(s) 90, 661
PfeI GAWTC 1 cut(s) 436
PkrI GCNGC 2 cut(s) 348, 643
PshBI ATTAAT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 2 cut(s) 18, 223
PstI CTGCAG 1 cut(s) 351
RsaI GTAC 4 cut(s) 18, 77, 356, 361
RsaNI GTAC 4 cut(s) 17, 76, 355, 360
RseI CAYNNNNRTG 1 cut(s) 390
SaqAI TTAA 2 cut(s) 420, 618
SatI GCNGC 2 cut(s) 347, 642
ScaI AGTACT 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 297
SduI GDGCHC 2 cut(s) 193, 686
SetI ASST 4 cut(s) 42, 161, 477, 565
SfcI CTRYAG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 6 cut(s) 69, 197, 273, 409, 615, 619
SsiI CCGC 1 cut(s) 602
SspMI CTAG 1 cut(s) 381
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 4 cut(s) 98, 359, 458, 630
TaqII GACCGA 1 cut(s) 34
TasI AATT 6 cut(s) 69, 197, 273, 409, 615, 619
TatI WGTACW 2 cut(s) 354, 359
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 2 cut(s) 420, 618
Tru9I TTAA 2 cut(s) 420, 618
TscAI CASTG 2 cut(s) 262, 347
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 2 cut(s) 346, 641
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 3 cut(s) 107, 525, 650
TspRI CASTG 2 cut(s) 262, 347
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 1 cut(s) 197
XceI RCATGY 2 cut(s) 264, 471
XmiI GTMKAC 1 cut(s) 625
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.