Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005659

Physical Location & Seq

Genomic Coordinates Reverse (-)

26711256 .. 26716498

Gene Structure 5243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCCAAGAAATCGGTACCACAACCACGGCTAACAAAGCTTTCGGTCTACCTTTACATACCTAATATAATTGGGTACATTAGGGTTCTCATGAGCTGTTATGCTTTCGCCATATGCTTCTCCAACAAACGACTTTTCTCCCTTCTCTATTTTGTCAGCTTTGTCTTTGACGGAGTAGATGGTTGGTGTGCTCGCAAATTCAATCAAGTTTCAACATTTGGAGCTGTTTTGGACATGGTAACAGACAGGATAAGCACTGCATGTCTCTTGGTAATTCTTTCACAAGTCTATCGGCCTGGCTTGATTTTCCTCTCGTTGCTTGCCTTAGATATTGGTAGCCACTGGCTGCAGATGTACAGTACTTTCCTGCTTGGCAAGGCTAGTCACAAAGATGTGAAAGATAGCACTAATTGGCTTTTTAAAGCATACTATGGGAATCAGATGTTTATGGCTTATTGTTGTGTGGCATGCGAGGTGCTTTATATCATTCTATTTCTTGTTGCAAAGAATGAAACTGAGAATGTGATTGAAGTTCTAATGGGTCTTGCACACCATATTACACCTCTTTCTGTTCTTGTTGGTTTGTGTTTATTTGGATGGGCAGTCAAACAAGCAATTAATTGTATACAGTTGAAGACAGCAGCAGATGTGTGTGTGCTTCATGATATCAACAAAAAGCAGAGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003881 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko01100 ko04070 map00562 map00564 map01100 map04070

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

229

Amino Acids

25.81

Weight (kDa)

8.87

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDP-OH_P_transf	PF01066	19 - 158	2.1e-17	CDP-alcohol phosphatidyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68000 AT4G38570 AT4G38570 AT4G38570 AT4G38570
fragaria_vesca	FvH4_2g13710 FvH4_2g13710 FvH4_2g13710 FvH4_2g14000
malus_domestica	MD05G1122300.v1.1 MD10G1124800.v1.1
prunus_persica	Prupe.7G263800_v2.0.a1
pyrus_communis	pycom05g11610 pycom10g10710
rosa_chinensis	RchiOBHm_Chr7g0224781
rosa_laevigata	RLG00000001854 RLG00000034638
rosa_multiflora	Rmu_sc0000144.1_g000011 Rmu_sc0010368.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234380 Rroxscaffold_3G00238490
rosa_rugosa	Rorug05G0250800 Rorug05G0250800 Rorug07G0225600 Rorug07G0225600
rosa_samantha	Rh5CG362500 Rh7CG396200
rosa_wichuraiana	Rw7G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	16
AccI	GTMKAC	2 cut(s)	48, 625
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	4 cut(s)	18, 77, 356, 361
AgsI	TTSAA	4 cut(s)	202, 213, 530, 634
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	4 cut(s)	40, 96, 159, 224
AluI	AGCT	4 cut(s)	40, 96, 159, 224
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	269
AoxI	GGCC	2 cut(s)	3, 293
ApeKI	GCWGC	2 cut(s)	346, 641
ApoI	RAATTY	1 cut(s)	197
AseI	ATTAAT	1 cut(s)	618
Asp718I	GGTACC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	686
BbsI	GAAGAC	1 cut(s)	641
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	333, 653
BccI	CCATC	2 cut(s)	173, 591
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	347
BisI	GCNGC	2 cut(s)	347, 642
BlsI	GCNGC	2 cut(s)	348, 643
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	297
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	297
BpiI	GAAGAC	1 cut(s)	641
BsaJI	CCNNGG	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	602
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	333, 653
BshFI	GGCC	2 cut(s)	5, 295
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	5, 295
Bsp1286I	GDGCHC	2 cut(s)	193, 686
Bsp1407I	TGTACA	1 cut(s)	354
BspANI	GGCC	2 cut(s)	5, 295
BspCNI	CTCAG	1 cut(s)	508
BspHI	TCATGA	2 cut(s)	90, 661
BspLI	GGNNCC	1 cut(s)	18
BspMAI	CTGCAG	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	16
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	26
BssNAI	GTATAC	1 cut(s)	626
Bst1107I	GTATAC	1 cut(s)	626
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	359, 630
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	3 cut(s)	193, 321, 469
BstDEI	CTNAG	2 cut(s)	325, 516
BstDSI	CCRYGG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	602
BstMAI	GTCTC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	2 cut(s)	264, 471
BstSCI	CCNGG	1 cut(s)	295
BstSFI	CTRYAG	1 cut(s)	347
BstV1I	GCAGC	2 cut(s)	333, 653
BstV2I	GAAGAC	1 cut(s)	641
BstZ17I	GTATAC	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	5, 295
BtgI	CCRYGG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	602
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	255, 340
Cac8I	GCNNGC	3 cut(s)	193, 321, 469
CciI	TCATGA	2 cut(s)	90, 661
Csp6I	GTAC	4 cut(s)	17, 76, 355, 360
CviAII	CATG	5 cut(s)	91, 235, 261, 468, 662
CviQI	GTAC	4 cut(s)	17, 76, 355, 360
DdeI	CTNAG	2 cut(s)	325, 516
DraI	TTTAAA	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	686
Eco32I	GATATC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	667
EcoT38I	GRGCYC	1 cut(s)	686
FaeI	CATG	5 cut(s)	94, 238, 264, 471, 665
FatI	CATG	5 cut(s)	90, 234, 260, 467, 661
FauNDI	CATATG	1 cut(s)	113
FblI	GTMKAC	2 cut(s)	48, 625
Fnu4HI	GCNGC	2 cut(s)	347, 642
FokI	GGATG	1 cut(s)	609
FriOI	GRGCYC	1 cut(s)	686
Fsp4HI	GCNGC	2 cut(s)	347, 642
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	2 cut(s)	347, 642
HaeIII	GGCC	2 cut(s)	5, 295
Hin1II	CATG	5 cut(s)	94, 238, 264, 471, 665
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	49, 626
Hpy188I	TCNGA	1 cut(s)	441
Hpy188III	TCNNGA	2 cut(s)	91, 662
Hpy8I	GTNNAC	2 cut(s)	49, 626
HpyAV	CCTTC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	359, 630
HpyCH4V	TGCA	4 cut(s)	260, 349, 503, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	2 cut(s)	325, 516
Hsp92II	CATG	5 cut(s)	94, 238, 264, 471, 665
KpnI	GGTACC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	5 cut(s)	232, 282, 309, 328, 380
Lsp1109I	GCAGC	2 cut(s)	333, 653
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	2 cut(s)	238, 383
MboII	GAAGA	1 cut(s)	646
MhlI	GDGCHC	2 cut(s)	193, 686
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	69, 197, 273, 409, 615, 619
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	3 cut(s)	320, 466, 573
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	420, 618
MslI	CAYNNNNRTG	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeI	CATATG	1 cut(s)	113
NlaIII	CATG	5 cut(s)	94, 238, 264, 471, 665
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	383
NspI	RCATGY	2 cut(s)	264, 471
PaeI	GCATGC	1 cut(s)	471
PagI	TCATGA	2 cut(s)	90, 661
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	2 cut(s)	348, 643
PshBI	ATTAAT	1 cut(s)	618
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	18
PstI	CTGCAG	1 cut(s)	351
RsaI	GTAC	4 cut(s)	18, 77, 356, 361
RsaNI	GTAC	4 cut(s)	17, 76, 355, 360
RseI	CAYNNNNRTG	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	420, 618
SatI	GCNGC	2 cut(s)	347, 642
ScaI	AGTACT	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	2 cut(s)	193, 686
SetI	ASST	8 cut(s)	42, 54, 64, 98, 161, 226, 477, 565
SfcI	CTRYAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	390
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	6 cut(s)	69, 197, 273, 409, 615, 619
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	1 cut(s)	295
TaaI	ACNGT	2 cut(s)	359, 630
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	6 cut(s)	69, 197, 273, 409, 615, 619
TatI	WGTACW	2 cut(s)	354, 359
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	2 cut(s)	420, 618
Tru9I	TTAA	2 cut(s)	420, 618
TscAI	CASTG	2 cut(s)	262, 347
TseFI	GTSAC	1 cut(s)	383
TseI	GCWGC	2 cut(s)	346, 641
Tsp45I	GTSAC	1 cut(s)	383
TspDTI	ATGAA	2 cut(s)	525, 650
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	2 cut(s)	262, 347
VspI	ATTAAT	1 cut(s)	618
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	2 cut(s)	264, 471
XmiI	GTMKAC	2 cut(s)	48, 625
XspI	CTAG	1 cut(s)	381
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.