Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010368.1

Orthogroup ID

OG0005659

Physical Location & Seq

Genomic Coordinates Reverse (-)

3916 .. 8254

Gene Structure 4339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010368.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgcttttatttgaggtctgtgaaattagaatagaacgcatctcggcgctcatccatttctcaattttccgattcacccttttgtcttaccagggatcccaagttgaaatacggaagctacgctttataaaagaagcttcaatggccaagaaatcggtaccacaaccacggctaacaaagctttcggtctatctttacattcccaatataattgggtacattagggttctcatgaactgttatgcttttgccatatgcttctccaacaaacgacttttctcccttctctattttgtcagctttgtctgtgatggagtagatggttggtgtgctcgcaaattcaatcaagtttcaacatttggagccgttttggacatggtaacagacaggataagcactgcatgtctcttggtaattctttcacaagtctatcggcctggcttgattttcctctcgttgcttgccttagatattggtagccactggctgcagatgtacagtactttcctgcttggcaaggctagtcacaaagatgtgaaagatagcactaattggctttttaaagcatactatgggaatcggatgtttatggcttactgttgtgtggcatgtgaggtgctttatatcattctatttcttgttgcaaagaatgaaactgagaatgtgattgaagttctaatgggtcttgcacaccatattacacctctttctgttcttgttggtttgtgtttatttggatgggcagtcaaacaagcaattaattgtatacaggtaatgaatagtgcctccatgacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003881 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016772 GO:0016780 GO:0017169 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko01100 ko04070 map00562 map00564 map01100 map04070

Pfam Domains

Protein Families

CDP-OH_P_transf

Protein Analysis

265

Amino Acids

30.2

Weight (kDa)

9.02

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005659)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G68000 AT4G38570 AT4G38570 AT4G38570 AT4G38570
fragaria_vesca	FvH4_2g13710 FvH4_2g13710 FvH4_2g13710 FvH4_2g14000
malus_domestica	MD05G1122300.v1.1 MD10G1124800.v1.1
prunus_persica	Prupe.7G263800_v2.0.a1
pyrus_communis	pycom05g11610 pycom10g10710
rosa_chinensis	RchiOBHm_Chr7g0224781
rosa_laevigata	RLG00000001854 RLG00000034638
rosa_multiflora	Rmu_sc0000144.1_g000011 Rmu_sc0010368.1_g000002
rosa_roxburghii	Rroxscaffold_3G00234380 Rroxscaffold_3G00238490
rosa_rugosa	Rorug05G0250800 Rorug05G0250800 Rorug07G0225600 Rorug07G0225600
rosa_samantha	Rh5CG362500 Rh7CG396200
rosa_wichuraiana	Rw7G031360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
Acc65I	GGTACC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	766
AclWI	GGATC	2 cut(s)	90, 103
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	4 cut(s)	159, 218, 497, 502
AgsI	TTSAA	5 cut(s)	107, 141, 343, 354, 671
AjnI	CCWGG	2 cut(s)	90, 436
AluBI	AGCT	4 cut(s)	118, 137, 181, 300
AluI	AGCT	4 cut(s)	118, 137, 181, 300
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	90, 103
AoxI	GGCC	2 cut(s)	144, 434
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	1 cut(s)	338
AseI	ATTAAT	1 cut(s)	759
Asp718I	GGTACC	1 cut(s)	157
AspLEI	GCGC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	95
BanI	GGYRCC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	474
BccI	CCATC	3 cut(s)	305, 314, 732
BceAI	ACGGC	2 cut(s)	185, 350
BciT130I	CCWGG	2 cut(s)	92, 438
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	488
BfoI	RGCGCY	1 cut(s)	50
BisI	GCNGC	1 cut(s)	488
BlsI	GCNGC	1 cut(s)	489
BmcAI	AGTACT	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	92, 438
BmiI	GGNNCC	3 cut(s)	97, 159, 364
BmrFI	CCNGG	2 cut(s)	92, 438
BmsI	GCATC	1 cut(s)	48
BsaJI	CCNNGG	2 cut(s)	91, 167
Bse1I	ACTGG	1 cut(s)	488
BseBI	CCWGG	2 cut(s)	92, 438
BseDI	CCNNGG	2 cut(s)	91, 167
BseGI	GGATG	3 cut(s)	51, 588, 743
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	474
BshFI	GGCC	2 cut(s)	146, 436
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	334
BsmAI	GTCTC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	146, 436
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	146, 436
BspCNI	CTCAG	1 cut(s)	649
BspHI	TCATGA	1 cut(s)	231
BspLI	GGNNCC	3 cut(s)	97, 159, 364
BspMAI	CTGCAG	1 cut(s)	492
BspPI	GGATC	2 cut(s)	90, 103
BspT107I	GGYRCC	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	2 cut(s)	91, 167
BssMI	GATC	1 cut(s)	95
BssNAI	GTATAC	1 cut(s)	767
Bst1107I	GTATAC	1 cut(s)	767
Bst2UI	CCWGG	2 cut(s)	92, 438
Bst4CI	ACNGT	3 cut(s)	239, 500, 599
BstAUI	TGTACA	1 cut(s)	495
BstC8I	GCNNGC	2 cut(s)	334, 462
BstDEI	CTNAG	2 cut(s)	466, 657
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	3 cut(s)	51, 588, 743
BstH2I	RGCGCY	1 cut(s)	50
BstHHI	GCGC	1 cut(s)	49
BstKTI	GATC	1 cut(s)	98
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	1 cut(s)	95
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 178
BstNI	CCWGG	2 cut(s)	92, 438
BstNSI	RCATGY	2 cut(s)	405, 612
BstSCI	CCNGG	2 cut(s)	90, 436
BstSFI	CTRYAG	1 cut(s)	488
BstV1I	GCAGC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
BstZ17I	GTATAC	1 cut(s)	767
BsuRI	GGCC	2 cut(s)	146, 436
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	3 cut(s)	51, 588, 743
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	396, 481
Cac8I	GCNNGC	2 cut(s)	334, 462
CciI	TCATGA	1 cut(s)	231
CfoI	GCGC	1 cut(s)	49
Csp6I	GTAC	4 cut(s)	158, 217, 496, 501
CviAII	CATG	5 cut(s)	232, 376, 402, 609, 790
CviQI	GTAC	4 cut(s)	158, 217, 496, 501
DdeI	CTNAG	2 cut(s)	466, 657
DpnI	GATC	1 cut(s)	97
DpnII	GATC	1 cut(s)	95
DraI	TTTAAA	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	144
EcoRII	CCWGG	2 cut(s)	90, 436
FaeI	CATG	5 cut(s)	235, 379, 405, 612, 793
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	5 cut(s)	231, 375, 401, 608, 789
FauNDI	CATATG	1 cut(s)	254
FblI	GTMKAC	1 cut(s)	766
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	3 cut(s)	38, 595, 750
Fsp4HI	GCNGC	1 cut(s)	488
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	1 cut(s)	48
GluI	GCNGC	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	50
HaeIII	GGCC	2 cut(s)	146, 436
HhaI	GCGC	1 cut(s)	49
Hin1II	CATG	5 cut(s)	235, 379, 405, 612, 793
Hin6I	GCGC	1 cut(s)	47
HinP1I	GCGC	1 cut(s)	47
HindIII	AAGCTT	2 cut(s)	135, 179
HinfI	GANTC	2 cut(s)	72, 577
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	767
Hpy188I	TCNGA	2 cut(s)	71, 582
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	767
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	3 cut(s)	239, 500, 599
HpyCH4V	TGCA	4 cut(s)	401, 490, 644, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 178
HpyF3I	CTNAG	2 cut(s)	466, 657
Hsp92II	CATG	5 cut(s)	235, 379, 405, 612, 793
HspAI	GCGC	1 cut(s)	47
KpnI	GGTACC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	362
LpnPI	CCDG	8 cut(s)	77, 104, 373, 423, 450, 469, 521, 755
Lsp1109I	GCAGC	1 cut(s)	474
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	379, 524
MalI	GATC	1 cut(s)	97
MboI	GATC	1 cut(s)	95
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	334
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	8 cut(s)	24, 63, 210, 338, 414, 550, 756, 760
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	5 cut(s)	7, 461, 607, 714, 796
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	561, 759, 796
MslI	CAYNNNNRTG	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	92, 438
MvaI	CCWGG	2 cut(s)	92, 438
MwoI	GCNNNNNNNGC	2 cut(s)	143, 178
NdeI	CATATG	1 cut(s)	254
NdeII	GATC	1 cut(s)	95
NlaIII	CATG	5 cut(s)	235, 379, 405, 612, 793
NlaIV	GGNNCC	3 cut(s)	97, 159, 364
NmeAIII	GCCGAG	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	524
NspI	RCATGY	2 cut(s)	405, 612
PagI	TCATGA	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	72, 577
PkrI	GCNGC	1 cut(s)	489
PshBI	ATTAAT	1 cut(s)	759
PsiI	TTATAA	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	90, 436
PspGI	CCWGG	2 cut(s)	90, 436
PspN4I	GGNNCC	3 cut(s)	97, 159, 364
PstI	CTGCAG	1 cut(s)	492
PsuI	RGATCY	1 cut(s)	95
RsaI	GTAC	4 cut(s)	159, 218, 497, 502
RsaNI	GTAC	4 cut(s)	158, 217, 496, 501
RseI	CAYNNNNRTG	1 cut(s)	531
SaqAI	TTAA	3 cut(s)	561, 759, 796
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	1 cut(s)	95
ScaI	AGTACT	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	92, 438
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	8 cut(s)	18, 120, 139, 183, 302, 618, 706, 774
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	488
SmiMI	CAYNNNNRTG	1 cut(s)	531
Sse9I	AATT	8 cut(s)	24, 63, 210, 338, 414, 550, 756, 760
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	2 cut(s)	90, 436
TaaI	ACNGT	3 cut(s)	239, 500, 599
TaqII	GACCGA	1 cut(s)	175
TasI	AATT	8 cut(s)	24, 63, 210, 338, 414, 550, 756, 760
TatI	WGTACW	2 cut(s)	495, 500
TfiI	GAWTC	2 cut(s)	72, 577
Tru1I	TTAA	3 cut(s)	561, 759, 796
Tru9I	TTAA	3 cut(s)	561, 759, 796
TscAI	CASTG	2 cut(s)	403, 488
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	1 cut(s)	487
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	3 cut(s)	248, 666, 791
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	2 cut(s)	403, 488
VspI	ATTAAT	1 cut(s)	759
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	2 cut(s)	405, 612
XmiI	GTMKAC	1 cut(s)	766
XspI	CTAG	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.