AT1G68430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015902
Physical Location & Seq
Reverse (-)
25654630 .. 25655574
945 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68430.1

Sequence Viewer

Length: 441 bp
ATGGCTACACTGCAGAGATTCAAGTTCTTGGGGACGCAGTGCGGAGTAGCAGCACAAAGCCCGACACGAAGTCCGAGTCCGAGGACAAGTCCATTGGTACAGCTTCGACGAAAGAAGACAACTTTAAAGATGCTTTTGAGTCTTGCATCTCCGAGTCGCCGAGAGCAGCAACCGTTGATTCATCATCATCACAAGGACGTAGCCGGACGGAAACTTAAAGACTTATTCGTCTCTTCGTCTTCCGCAGAGGAAGAACAAGAAGAGGACGAGAGACCAAAGGGGAAAACAAAAGAAGAAGTTCTTGCAGCCATGGCGGCTAAACTGAATGCAGCTTCAAGATTACAATGTGAGTCTGCTGATGCAGCACCAGTTTGGTTCGGATTCAGCAAACGGCTTCTTCAGCGAGCTTGGCGTCCTAAACTTGGTACCATTCACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.38

Weight (kDa)

10.19

Isoelectric Point (pI)

80.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68430
fragaria_vesca FvH4_4g26860
malus_domestica MD13G1036300.v1.1 MD16G1038900.v1.1
prunus_persica Prupe.1G315800_v2.0.a1
pyrus_communis pycom13g03160 pycom16g03330
rosa_chinensis RchiOBHm_Chr4g0434621
rosa_laevigata RLG00000006662
rosa_multiflora Rmu_sc0005783.1_g000003 Rmu_sc0005899.1_g000016
rosa_rugosa Rorug04G0277200
rosa_samantha Rh4BG341300 Rh4CG356100
rosa_wichuraiana Rw4G028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
Acc65I GGTACC 1 cut(s) 425
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 3 cut(s) 42, 243, 314
AcuI CTGAAG 1 cut(s) 383
AcyI GRCGYC 1 cut(s) 412
AfaI GTAC 2 cut(s) 99, 427
AfiI CCNNNNNNNGG 1 cut(s) 422
AgsI TTSAA 2 cut(s) 22, 336
AhdI GACNNNNNGTC 1 cut(s) 69
AluBI AGCT 3 cut(s) 103, 332, 407
AluI AGCT 3 cut(s) 103, 332, 407
Alw26I GTCTC 2 cut(s) 235, 265
ApeKI GCWGC 5 cut(s) 50, 166, 305, 329, 362
ArsI GACNNNNNNTTYG 2 cut(s) 61, 93
Asp700I GAANNNNTTC 1 cut(s) 297
Asp718I GGTACC 1 cut(s) 425
BanI GGYRCC 1 cut(s) 425
BauI CACGAG 1 cut(s) 434
BbsI GAAGAC 2 cut(s) 122, 231
BbvI GCAGC 5 cut(s) 62, 178, 317, 341, 374
BceAI ACGGC 1 cut(s) 407
BcoDI GTCTC 2 cut(s) 235, 265
BfmI CTRYAG 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 6 cut(s) 51, 167, 306, 315, 330, 363
BlsI GCNGC 6 cut(s) 52, 168, 307, 316, 331, 364
BmeRI GACNNNNNGTC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 427
BmsI GCATC 3 cut(s) 120, 155, 349
BpiI GAAGAC 2 cut(s) 122, 231
BsaHI GRCGYC 1 cut(s) 412
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 2 cut(s) 80, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 368
BseDI CCNNGG 2 cut(s) 80, 309
BseLI CCNNNNNNNGG 1 cut(s) 422
BseNI ACTGG 1 cut(s) 368
BseXI GCAGC 5 cut(s) 62, 178, 317, 341, 374
BshNI GGYRCC 1 cut(s) 425
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 235, 265
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 331
Bso31I GGTCTC 1 cut(s) 265
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 3 cut(s) 42, 243, 314
BspLI GGNNCC 1 cut(s) 427
BspMAI CTGCAG 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 265
BsrI ACTGG 1 cut(s) 368
BssECI CCNNGG 2 cut(s) 80, 309
BssNI GRCGYC 1 cut(s) 412
BssSI CACGAG 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 434
Bst4CI ACNGT 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 238, 255
BstACI GRCGYC 1 cut(s) 412
BstC8I GCNNGC 1 cut(s) 405
BstDSI CCRYGG 1 cut(s) 309
BstMAI GTCTC 2 cut(s) 235, 265
BstMWI GCNNNNNNNGC 5 cut(s) 311, 314, 362, 400, 409
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 5 cut(s) 62, 178, 317, 341, 374
BstV2I GAAGAC 2 cut(s) 122, 231
BtgI CCRYGG 1 cut(s) 309
BtsI GCAGTG 2 cut(s) 8, 44
BtsIMutI CAGTG 2 cut(s) 8, 44
Cac8I GCNNGC 1 cut(s) 405
CseI GACGC 2 cut(s) 43, 401
Csp6I GTAC 2 cut(s) 98, 426
CviAII CATG 1 cut(s) 310
CviJI RGCY 9 cut(s) 5, 60, 103, 203, 308, 317, 332, 394, 407
CviKI_1 RGCY 9 cut(s) 5, 60, 103, 203, 308, 317, 332, 394, 407
CviQI GTAC 2 cut(s) 98, 426
DraI TTTAAA 1 cut(s) 126
DrdI GACNNNNNNGTC 1 cut(s) 227
DriI GACNNNNNGTC 1 cut(s) 69
DseDI GACNNNNNNGTC 1 cut(s) 227
Eam1104I CTCTTC 2 cut(s) 238, 255
Eam1105I GACNNNNNGTC 1 cut(s) 69
EarI CTCTTC 2 cut(s) 238, 255
Eco130I CCWWGG 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 383
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 235
FaeI CATG 1 cut(s) 313
FaiI YATR 1 cut(s) 311
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 6 cut(s) 51, 167, 306, 315, 330, 363
Fsp4HI GCNGC 6 cut(s) 51, 167, 306, 315, 330, 363
GluI GCNGC 6 cut(s) 51, 167, 306, 315, 330, 363
HapII CCGG 1 cut(s) 204
HgaI GACGC 2 cut(s) 43, 401
Hin1I GRCGYC 1 cut(s) 412
Hin1II CATG 1 cut(s) 313
HinfI GANTC 7 cut(s) 18, 76, 139, 154, 178, 350, 381
HpaII CCGG 1 cut(s) 204
Hpy188I TCNGA 4 cut(s) 75, 81, 153, 380
Hpy188III TCNNGA 2 cut(s) 336, 434
Hpy99I CGWCG 1 cut(s) 111
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 5 cut(s) 13, 146, 305, 329, 362
HpyF10VI GCNNNNNNNGC 5 cut(s) 311, 314, 362, 400, 409
HpySE526I ACGT 1 cut(s) 198
Hsp92I GRCGYC 1 cut(s) 412
Hsp92II CATG 1 cut(s) 313
KpnI GGTACC 1 cut(s) 429
LpnPI CCDG 2 cut(s) 217, 381
Lsp1109I GCAGC 5 cut(s) 62, 178, 317, 341, 374
LweI GCATC 3 cut(s) 120, 155, 349
MaeII ACGT 1 cut(s) 198
MboII GAAGA 7 cut(s) 127, 225, 231, 263, 272, 305, 389
MlyI GAGTC 4 cut(s) 85, 148, 163, 359
MnlI CCTC 3 cut(s) 75, 241, 256
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 2 cut(s) 125, 216
MspI CCGG 1 cut(s) 204
Mva1269I GAATGC 1 cut(s) 331
MwoI GCNNNNNNNGC 5 cut(s) 311, 314, 362, 400, 409
NcoI CCATGG 1 cut(s) 309
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 427
NmeAIII GCCGAG 1 cut(s) 185
PctI GAATGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 3 cut(s) 18, 178, 381
PkrI GCNGC 6 cut(s) 52, 168, 307, 316, 331, 364
PleI GAGTC 4 cut(s) 84, 147, 162, 358
PpsI GAGTC 4 cut(s) 84, 147, 162, 358
PspN4I GGNNCC 1 cut(s) 427
PstI CTGCAG 1 cut(s) 15
RsaI GTAC 2 cut(s) 99, 427
RsaNI GTAC 2 cut(s) 98, 426
SaqAI TTAA 2 cut(s) 125, 216
SatI GCNGC 6 cut(s) 51, 167, 306, 315, 330, 363
SchI GAGTC 4 cut(s) 85, 148, 163, 359
SetI ASST 4 cut(s) 105, 201, 334, 409
SfaNI GCATC 3 cut(s) 120, 155, 349
SfcI CTRYAG 1 cut(s) 11
SsiI CCGC 3 cut(s) 42, 243, 314
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 174
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 106
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 3 cut(s) 18, 178, 381
Tru1I TTAA 2 cut(s) 125, 216
Tru9I TTAA 2 cut(s) 125, 216
TscAI CASTG 2 cut(s) 15, 44
TseI GCWGC 5 cut(s) 50, 166, 305, 329, 362
TspDTI ATGAA 1 cut(s) 170
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 2 cut(s) 15, 44
XmnI GAANNNNTTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.