RLG00000006662

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0015902
Physical Location & Seq
Reverse (-)
9489181 .. 9489902
722 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006662

Sequence Viewer

Length: 603 bp
ATGGCAGTTTGCAGCGGCAACAAACCTCAAAAGATGGCGACTTTGCACAAATTCAAGCTCCTAGCTCTGCACTGCGGAGCGGCCCAAAGCCCAACGCGGAGCCCAAGAACGAGCCCGTTGATCCAGCTCCCTCGCCGGAAAACCAGCCTGCTGATGCTTCTTAGCCGGAGCGGGAGCCGGCGATCGACTAGACGACAGGACCAGCCTGTACCTGTGCAGCCGCCGCCGGAGAGGAGGAACAGCCTGAAGGACCTGTTTGTGTCGTCCCCGCCTTTTGAAGGGAATGAGAAAATAGAGAAGCGGCAGGAGTTTGGGTTGGTAGTGGTAGCCGATGGAGTTGGACCCGGTTCGCCGAGACCGGGGTGGACCGGTTTCCGGTACAAGTCGTTGTTGAGGAGGGCTTGGCGTCCTGTGTTGGTTACTATTCCTGATAAAATTTTCTTCTTGACATCTCGGCGGTGCTTTGGTTACGTTCGGTTTAATCATGTTCTTGGTGAAGCTAATTTCTTGACGGAAAAGAGTAATGGAGTCCTGCCGGAGAAGCTGGCCGTGATGTTAGGTTTGATCCTTGGTGTAGGCTACCCTAAATGCTTTGTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.39

Weight (kDa)

10.95

Isoelectric Point (pI)

72.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68430
fragaria_vesca FvH4_4g26860
malus_domestica MD13G1036300.v1.1 MD16G1038900.v1.1
prunus_persica Prupe.1G315800_v2.0.a1
pyrus_communis pycom13g03160 pycom16g03330
rosa_chinensis RchiOBHm_Chr4g0434621
rosa_laevigata RLG00000006662
rosa_multiflora Rmu_sc0005783.1_g000003 Rmu_sc0005899.1_g000016
rosa_rugosa Rorug04G0277200
rosa_samantha Rh4BG341300 Rh4CG356100
rosa_wichuraiana Rw4G028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 80, 171
AccII CGCG 1 cut(s) 97
AclWI GGATC 2 cut(s) 115, 559
AcoI YGGCCR 1 cut(s) 546
AcsI RAATTY 2 cut(s) 50, 435
AcuI CTGAAG 1 cut(s) 266
AcyI GRCGYC 1 cut(s) 406
AfaI GTAC 2 cut(s) 210, 380
AfiI CCNNNNNNNGG 3 cut(s) 278, 359, 375
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 2 cut(s) 55, 278
AluBI AGCT 5 cut(s) 58, 65, 127, 500, 544
AluI AGCT 5 cut(s) 58, 65, 127, 500, 544
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 2 cut(s) 115, 559
AoxI GGCC 2 cut(s) 81, 546
ApeKI GCWGC 2 cut(s) 12, 217
ApoI RAATTY 2 cut(s) 50, 435
AsiGI ACCGGT 1 cut(s) 368
AspS9I GGNCC 5 cut(s) 82, 199, 250, 341, 366
AsuC2I CCSGG 2 cut(s) 345, 360
AsuHPI GGTGA 1 cut(s) 506
AvaII GGWCC 4 cut(s) 199, 250, 341, 366
BanII GRGCYC 2 cut(s) 104, 116
BbvI GCAGC 2 cut(s) 24, 229
BccI CCATC 2 cut(s) 28, 326
BceAI ACGGC 1 cut(s) 533
BcnI CCSGG 2 cut(s) 345, 360
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 2 cut(s) 62, 189
BisI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
BlsI GCNGC 7 cut(s) 14, 17, 82, 219, 222, 225, 303
Bme1390I CCNGG 2 cut(s) 345, 360
Bme18I GGWCC 4 cut(s) 199, 250, 341, 366
BmgT120I GGNCC 5 cut(s) 82, 199, 250, 341, 366
BmiI GGNNCC 3 cut(s) 101, 176, 343
BmrFI CCNGG 2 cut(s) 345, 360
BmsI GCATC 1 cut(s) 144
BpuMI CCSGG 2 cut(s) 345, 360
BsaHI GRCGYC 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 2 cut(s) 359, 568
BsaWI WCCGGW 2 cut(s) 368, 375
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 359, 375
Bse118I RCCGGY 2 cut(s) 177, 368
BseDI CCNNGG 2 cut(s) 359, 568
BseLI CCNNNNNNNGG 3 cut(s) 278, 359, 375
BseRI GAGGAG 2 cut(s) 247, 409
BseXI GCAGC 2 cut(s) 24, 229
BsgI GTGCAG 2 cut(s) 53, 236
Bsh1236I CGCG 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 185
BshFI GGCC 2 cut(s) 83, 548
BshTI ACCGGT 1 cut(s) 368
BsiEI CGRYCG 1 cut(s) 185
BsiSI CCGG 9 cut(s) 136, 166, 178, 227, 345, 359, 369, 376, 536
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 278, 359, 375
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 2 cut(s) 83, 548
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 104, 116
Bsp143I GATC 3 cut(s) 120, 182, 564
BspANI GGCC 2 cut(s) 83, 548
BspFNI CGCG 1 cut(s) 97
BspLI GGNNCC 3 cut(s) 101, 176, 343
BspPI GGATC 2 cut(s) 115, 559
BspTNI GGTCTC 1 cut(s) 349
BsrBI CCGCTC 2 cut(s) 80, 171
BsrFI RCCGGY 2 cut(s) 177, 368
BssAI RCCGGY 2 cut(s) 177, 368
BssECI CCNNGG 2 cut(s) 359, 568
BssMI GATC 3 cut(s) 120, 182, 564
BssNI GRCGYC 1 cut(s) 406
BssT1I CCWWGG 1 cut(s) 568
BstACI GRCGYC 1 cut(s) 406
BstC8I GCNNGC 3 cut(s) 149, 179, 546
BstDEI CTNAG 1 cut(s) 161
BstENI CCTNNNNNAGG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 97
BstKTI GATC 3 cut(s) 123, 185, 567
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 3 cut(s) 120, 182, 564
BstMCI CGRYCG 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 223, 541
BstSCI CCNGG 2 cut(s) 343, 358
BstUI CGCG 1 cut(s) 97
BstV1I GCAGC 2 cut(s) 24, 229
BsuRI GGCC 2 cut(s) 83, 548
BtsI GCAGTG 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 3 cut(s) 149, 179, 546
Cfr10I RCCGGY 2 cut(s) 177, 368
Cfr13I GGNCC 5 cut(s) 82, 199, 250, 341, 366
CseI GACGC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 209, 379
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 1 cut(s) 485
CviQI GTAC 2 cut(s) 209, 379
DdeI CTNAG 1 cut(s) 161
DpnI GATC 3 cut(s) 122, 184, 566
DpnII GATC 3 cut(s) 120, 182, 564
EaeI YGGCCR 1 cut(s) 546
Eco130I CCWWGG 1 cut(s) 568
Eco24I GRGCYC 2 cut(s) 104, 116
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 4 cut(s) 199, 250, 341, 366
Eco57I CTGAAG 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 2 cut(s) 104, 116
ErhI CCWWGG 1 cut(s) 568
FaeI CATG 1 cut(s) 488
FaiI YATR 1 cut(s) 486
FaqI GGGAC 1 cut(s) 250
FatI CATG 1 cut(s) 484
FauI CCCGC 2 cut(s) 164, 276
Fnu4HI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
FriOI GRGCYC 2 cut(s) 104, 116
Fsp4HI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
FspBI CTAG 2 cut(s) 62, 189
GluI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
HaeIII GGCC 2 cut(s) 83, 548
HapII CCGG 9 cut(s) 136, 166, 178, 227, 345, 359, 369, 376, 536
HgaI GACGC 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 406
Hin1II CATG 1 cut(s) 488
HinfI GANTC 1 cut(s) 528
HpaII CCGG 9 cut(s) 136, 166, 178, 227, 345, 359, 369, 376, 536
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 1 cut(s) 366
Hpy188III TCNNGA 3 cut(s) 428, 445, 508
Hpy8I GTNNAC 1 cut(s) 366
HpyAV CCTTC 2 cut(s) 241, 272
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 4 cut(s) 12, 46, 70, 217
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 541
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 1 cut(s) 406
Hsp92II CATG 1 cut(s) 488
KroI GCCGGC 1 cut(s) 177
KroNI GCCGGC 1 cut(s) 179
Kzo9I GATC 3 cut(s) 120, 182, 564
LmnI GCTCC 6 cut(s) 63, 77, 99, 132, 168, 174
Lsp1109I GCAGC 2 cut(s) 24, 229
LweI GCATC 1 cut(s) 144
MaeI CTAG 2 cut(s) 62, 189
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 418, 467
MalI GATC 3 cut(s) 122, 184, 566
MbiI CCGCTC 2 cut(s) 80, 171
MboI GATC 3 cut(s) 120, 182, 564
MboII GAAGA 1 cut(s) 433
MhlI GDGCHC 2 cut(s) 104, 116
MluCI AATT 3 cut(s) 50, 435, 502
MlyI GAGTC 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 6 cut(s) 36, 141, 225, 228, 387, 390
MroNI GCCGGC 1 cut(s) 177
MseI TTAA 1 cut(s) 480
MspA1I CMGCKG 1 cut(s) 15
MspI CCGG 9 cut(s) 136, 166, 178, 227, 345, 359, 369, 376, 536
MspR9I CCNGG 2 cut(s) 345, 360
MvnI CGCG 1 cut(s) 97
MwoI GCNNNNNNNGC 2 cut(s) 223, 541
NaeI GCCGGC 1 cut(s) 179
NciI CCSGG 2 cut(s) 345, 360
NdeII GATC 3 cut(s) 120, 182, 564
NgoMIV GCCGGC 1 cut(s) 177
NlaIII CATG 1 cut(s) 488
NlaIV GGNNCC 3 cut(s) 101, 176, 343
NmeAIII GCCGAG 2 cut(s) 378, 433
PdiI GCCGGC 1 cut(s) 179
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 7 cut(s) 14, 17, 82, 219, 222, 225, 303
Ple19I CGATCG 1 cut(s) 185
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 250
Psp5II RGGWCCY 1 cut(s) 250
PspN4I GGNNCC 3 cut(s) 101, 176, 343
PspPI GGNCC 5 cut(s) 82, 199, 250, 341, 366
PspPPI RGGWCCY 1 cut(s) 250
PvuI CGATCG 1 cut(s) 185
RsaI GTAC 2 cut(s) 210, 380
RsaNI GTAC 2 cut(s) 209, 379
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 7 cut(s) 13, 16, 81, 218, 221, 224, 302
Sau3AI GATC 3 cut(s) 120, 182, 564
Sau96I GGNCC 5 cut(s) 82, 199, 250, 341, 366
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 2 cut(s) 345, 360
SduI GDGCHC 2 cut(s) 104, 116
SfaNI GCATC 1 cut(s) 144
SinI GGWCC 4 cut(s) 199, 250, 341, 366
Sse9I AATT 3 cut(s) 50, 435, 502
SspMI CTAG 2 cut(s) 62, 189
StyD4I CCNGG 2 cut(s) 343, 358
StyI CCWWGG 1 cut(s) 568
TaiI ACGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 185
TasI AATT 3 cut(s) 50, 435, 502
TauI GCSGC 5 cut(s) 18, 83, 223, 226, 304
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 1 cut(s) 77
TseI GCWGC 2 cut(s) 12, 217
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 1 cut(s) 77
VpaK11BI GGWCC 4 cut(s) 199, 250, 341, 366
XagI CCTNNNNNAGG 1 cut(s) 276
XapI RAATTY 2 cut(s) 50, 435
XspI CTAG 2 cut(s) 62, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.