Prupe.1G315800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015902
Physical Location & Seq
Reverse (-)
30487321 .. 30487781
461 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G315800.1

Sequence Viewer

Length: 426 bp
ATGGGGACGCTACAGAAGTTCAAGCTGCTCGCGACGCAGTGCGGCGTGGCCCAAAGCCCAACCCGAAGCCCAAGAACGAGCCCATTGATCCAGCTCCGCCGCCGCAAACCCACCTTGCTAATGCTCCTGACCCGGAGCAGCAGTCGCCGACGAGACACACCGGTCCAGTCACTGCCGCAGAAGGCTCCGGCTCCGGTTCAGAGGCACAGCCTCAAGGACCTCTTTGTGTCTTCCCCGCCTTTTGAATTAAACGAGAAAAGGAAGAGTGAGATAGATACGCGGCAAGAGTTCGGTTTGGTGGTGGCGGGTAAAGCAGTTGGTGGAGTTGGGCCGGGTTCACCTAGACCGGGCTGGACCGGTTTCCGTTACAAGTCATTGTTACTGAGAAGGGCTTGGCGCCCTGTGCTCGTTACCATTCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.77

Weight (kDa)

11.76

Isoelectric Point (pI)

84.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68430
fragaria_vesca FvH4_4g26860
malus_domestica MD13G1036300.v1.1 MD16G1038900.v1.1
prunus_persica Prupe.1G315800_v2.0.a1
pyrus_communis pycom13g03160 pycom16g03330
rosa_chinensis RchiOBHm_Chr4g0434621
rosa_laevigata RLG00000006662
rosa_multiflora Rmu_sc0005783.1_g000003 Rmu_sc0005899.1_g000016
rosa_rugosa Rorug04G0277200
rosa_samantha Rh4BG341300 Rh4CG356100
rosa_wichuraiana Rw4G028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 396
AccII CGCG 2 cut(s) 32, 280
AciI CCGC 8 cut(s) 42, 97, 100, 103, 176, 236, 280, 305
AclWI GGATC 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 397
AfiI CCNNNNNNNGG 1 cut(s) 347
AgeI ACCGGT 2 cut(s) 160, 356
AgsI TTSAA 2 cut(s) 22, 245
AluBI AGCT 2 cut(s) 25, 94
AluI AGCT 2 cut(s) 25, 94
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 147
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 172
AoxI GGCC 2 cut(s) 48, 329
ApeKI GCWGC 2 cut(s) 25, 138
AsiGI ACCGGT 2 cut(s) 160, 356
AspLEI GCGC 1 cut(s) 399
AspS9I GGNCC 5 cut(s) 49, 163, 217, 329, 354
AsuC2I CCSGG 3 cut(s) 133, 333, 348
AsuHPI GGTGA 1 cut(s) 330
AvaII GGWCC 3 cut(s) 163, 217, 354
BanI GGYRCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 12, 150
BcnI CCSGG 3 cut(s) 133, 333, 348
BcoDI GTCTC 1 cut(s) 147
BfaI CTAG 1 cut(s) 342
BfmI CTRYAG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 400
BisI GCNGC 7 cut(s) 26, 43, 100, 103, 139, 176, 281
BlsI GCNGC 7 cut(s) 27, 44, 101, 104, 140, 177, 282
Bme1390I CCNGG 3 cut(s) 133, 333, 348
Bme18I GGWCC 3 cut(s) 163, 217, 354
BmgT120I GGNCC 5 cut(s) 49, 163, 217, 329, 354
BmiI GGNNCC 3 cut(s) 186, 192, 398
BmrFI CCNGG 3 cut(s) 133, 333, 348
BpiI GAAGAC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 3 cut(s) 133, 333, 348
BsaHI GRCGYC 1 cut(s) 397
BsaWI WCCGGW 3 cut(s) 160, 193, 356
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 2 cut(s) 160, 356
Bse1I ACTGG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 374, 411
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 12, 150
Bsh1236I CGCG 2 cut(s) 32, 280
BshFI GGCC 2 cut(s) 50, 331
BshNI GGYRCC 1 cut(s) 396
BshTI ACCGGT 2 cut(s) 160, 356
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 7 cut(s) 133, 161, 188, 194, 332, 347, 357
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 147
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 50, 331
Bsp1286I GDGCHC 2 cut(s) 83, 408
Bsp143I GATC 1 cut(s) 87
Bsp68I TCGCGA 1 cut(s) 32
BspACI CCGC 8 cut(s) 42, 97, 100, 103, 176, 236, 280, 305
BspANI GGCC 2 cut(s) 50, 331
BspCNI CTCAG 2 cut(s) 375, 412
BspFNI CGCG 2 cut(s) 32, 280
BspLI GGNNCC 3 cut(s) 186, 192, 398
BspPI GGATC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 396
BsrFI RCCGGY 2 cut(s) 160, 356
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 2 cut(s) 160, 356
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 257
BstACI GRCGYC 1 cut(s) 397
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 383, 420
BstFNI CGCG 2 cut(s) 32, 280
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 1 cut(s) 399
BstKTI GATC 1 cut(s) 90
BstMAI GTCTC 1 cut(s) 147
BstMBI GATC 1 cut(s) 87
BstMWI GCNNNNNNNGC 4 cut(s) 34, 144, 311, 403
BstSCI CCNGG 3 cut(s) 131, 331, 346
BstSFI CTRYAG 1 cut(s) 11
BstUI CGCG 2 cut(s) 32, 280
BstV1I GCAGC 2 cut(s) 12, 150
BstV2I GAAGAC 1 cut(s) 222
BsuRI GGCC 2 cut(s) 50, 331
BtsI GCAGTG 2 cut(s) 44, 170
BtsIMutI CAGTG 2 cut(s) 44, 170
BtuMI TCGCGA 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 30
CaiI CAGNNNCTG 1 cut(s) 172
CfoI GCGC 1 cut(s) 399
Cfr10I RCCGGY 2 cut(s) 160, 356
Cfr13I GGNCC 5 cut(s) 49, 163, 217, 329, 354
CseI GACGC 2 cut(s) 16, 43
CspAI ACCGGT 2 cut(s) 160, 356
DdeI CTNAG 2 cut(s) 383, 420
DinI GGCGCC 1 cut(s) 398
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DrdI GACNNNNNNGTC 1 cut(s) 161
DseDI GACNNNNNNGTC 1 cut(s) 161
Eam1104I CTCTTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 257
EciI GGCGGA 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 83
Eco47I GGWCC 3 cut(s) 163, 217, 354
EcoO109I RGGNCCY 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 83
EgeI GGCGCC 1 cut(s) 398
EheI GGCGCC 1 cut(s) 398
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FaqI GGGAC 1 cut(s) 19
FauI CCCGC 2 cut(s) 243, 298
Fnu4HI GCNGC 7 cut(s) 26, 43, 100, 103, 139, 176, 281
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 7 cut(s) 26, 43, 100, 103, 139, 176, 281
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 398
GluI GCNGC 7 cut(s) 26, 43, 100, 103, 139, 176, 281
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 2 cut(s) 50, 331
HapII CCGG 7 cut(s) 133, 161, 188, 194, 332, 347, 357
HgaI GACGC 2 cut(s) 16, 43
HhaI GCGC 1 cut(s) 399
Hin1I GRCGYC 1 cut(s) 397
Hin6I GCGC 1 cut(s) 397
HinP1I GCGC 1 cut(s) 397
HpaII CCGG 7 cut(s) 133, 161, 188, 194, 332, 347, 357
HphI GGTGA 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 3 cut(s) 31, 127, 419
Hpy8I GTNNAC 1 cut(s) 338
Hpy99I CGWCG 2 cut(s) 37, 153
HpyAV CCTTC 2 cut(s) 175, 381
HpyF10VI GCNNNNNNNGC 4 cut(s) 34, 144, 311, 403
HpyF3I CTNAG 2 cut(s) 383, 420
Hsp92I GRCGYC 1 cut(s) 397
HspAI GCGC 1 cut(s) 397
KasI GGCGCC 1 cut(s) 396
Kzo9I GATC 1 cut(s) 87
LmnI GCTCC 5 cut(s) 99, 129, 135, 190, 196
Lsp1109I GCAGC 2 cut(s) 12, 150
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 4 cut(s) 168, 365, 378, 409
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 222, 274
MhlI GDGCHC 2 cut(s) 83, 408
MluCI AATT 1 cut(s) 245
Mly113I GGCGCC 1 cut(s) 397
MnlI CCTC 3 cut(s) 195, 221, 230
MseI TTAA 1 cut(s) 248
MspI CCGG 7 cut(s) 133, 161, 188, 194, 332, 347, 357
MspR9I CCNGG 3 cut(s) 133, 333, 348
MvnI CGCG 2 cut(s) 32, 280
MwoI GCNNNNNNNGC 4 cut(s) 34, 144, 311, 403
NarI GGCGCC 1 cut(s) 397
NciI CCSGG 3 cut(s) 133, 333, 348
NdeII GATC 1 cut(s) 87
NlaIV GGNNCC 3 cut(s) 186, 192, 398
NmuCI GTSAC 1 cut(s) 168
NruI TCGCGA 1 cut(s) 32
PinAI ACCGGT 2 cut(s) 160, 356
PkrI GCNGC 7 cut(s) 27, 44, 101, 104, 140, 177, 282
PluTI GGCGCC 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 217
PspN4I GGNNCC 3 cut(s) 186, 192, 398
PspPI GGNCC 5 cut(s) 49, 163, 217, 329, 354
PspPPI RGGWCCY 1 cut(s) 217
PstNI CAGNNNCTG 1 cut(s) 172
RruI TCGCGA 1 cut(s) 32
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 7 cut(s) 26, 43, 100, 103, 139, 176, 281
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 5 cut(s) 49, 163, 217, 329, 354
ScrFI CCNGG 3 cut(s) 133, 333, 348
SduI GDGCHC 2 cut(s) 83, 408
SetI ASST 5 cut(s) 27, 96, 116, 222, 343
SfcI CTRYAG 1 cut(s) 11
SfoI GGCGCC 1 cut(s) 398
SinI GGWCC 3 cut(s) 163, 217, 354
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
Sse9I AATT 1 cut(s) 245
SsiI CCGC 8 cut(s) 42, 97, 100, 103, 176, 236, 280, 305
SspDI GGCGCC 1 cut(s) 396
SspMI CTAG 1 cut(s) 342
StyD4I CCNGG 3 cut(s) 131, 331, 346
TasI AATT 1 cut(s) 245
TauI GCSGC 5 cut(s) 45, 102, 105, 178, 283
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 2 cut(s) 44, 177
TseFI GTSAC 1 cut(s) 168
TseI GCWGC 2 cut(s) 25, 138
Tsp45I GTSAC 1 cut(s) 168
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 2 cut(s) 44, 177
VpaK11BI GGWCC 3 cut(s) 163, 217, 354
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.