pycom16g03330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015902
Physical Location & Seq
Forward (+)
2072533 .. 2073000
468 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g03330.1

Sequence Viewer

Length: 468 bp
ATGGGAGTTAGCAGCAGCAACAGACCTCAAATCCAAAAGATGGGGACTTTACAGAAATTCAAGCTCCTCGCCACGCAGTGCGGCGTGGCCCGGAGCCCGACGCGAAGCCCGCGGTCGAGCCCCTTGATCCAGCTCCCCCGCCGCAAACCCACCTTGCTCATGCTCCTGACACGGAGCAGCAGTCGCCGCCGTGACCCGCCGGTTCCGATGCCGCTACCGGAAGAGCTTCCGGTTCAGAGGAACAGTTTGAAGGATTTGTTTGTGTCGTCGCCGCCATTTGAGTTGAACGACGGGACGAAGGCGGAGAGTGAGAGAGATAAGCGGGCAGAGTTCGGTAGTTTGCTGGCGGTAGGTAAAGAAATTGGCGGATTTGGACCGGGCTCGCCTAGGCCGGCCTGGACCGGTTTCCGTTACAAGTCGTTACTGAGAAGAGCTTGGCGGCCTACGCTCGTCACTATTCCCGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.29

Weight (kDa)

11.37

Isoelectric Point (pI)

85.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68430
fragaria_vesca FvH4_4g26860
malus_domestica MD13G1036300.v1.1 MD16G1038900.v1.1
prunus_persica Prupe.1G315800_v2.0.a1
pyrus_communis pycom13g03160 pycom16g03330
rosa_chinensis RchiOBHm_Chr4g0434621
rosa_laevigata RLG00000006662
rosa_multiflora Rmu_sc0005783.1_g000003 Rmu_sc0005899.1_g000016
rosa_rugosa Rorug04G0277200
rosa_samantha Rh4BG341300 Rh4CG356100
rosa_wichuraiana Rw4G028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 40
AccII CGCG 2 cut(s) 103, 112
AclWI GGATC 1 cut(s) 121
AcsI RAATTY 1 cut(s) 56
AdeI CACNNNGTG 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 40
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 3 cut(s) 61, 250, 286
AjnI CCWGG 1 cut(s) 395
AluBI AGCT 4 cut(s) 64, 133, 226, 434
AluI AGCT 4 cut(s) 64, 133, 226, 434
AlwI GGATC 1 cut(s) 121
AoxI GGCC 4 cut(s) 87, 389, 393, 440
ApeKI GCWGC 3 cut(s) 12, 15, 177
ApoI RAATTY 1 cut(s) 56
AsiGI ACCGGT 1 cut(s) 401
Asp700I GAANNNNTTC 1 cut(s) 225
AspA2I CCTAGG 1 cut(s) 386
AspS9I GGNCC 3 cut(s) 88, 374, 399
AsuC2I CCSGG 2 cut(s) 91, 378
AvaII GGWCC 2 cut(s) 374, 399
AvrII CCTAGG 1 cut(s) 386
BanII GRGCYC 3 cut(s) 98, 122, 383
BbvI GCAGC 3 cut(s) 24, 27, 189
BccI CCATC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 174
BciT130I CCWGG 1 cut(s) 397
BcnI CCSGG 2 cut(s) 91, 378
BfaI CTAG 1 cut(s) 387
BisI GCNGC 9 cut(s) 13, 16, 82, 142, 178, 187, 212, 272, 440
BlnI CCTAGG 1 cut(s) 386
BlsI GCNGC 9 cut(s) 14, 17, 83, 143, 179, 188, 213, 273, 441
Bme1390I CCNGG 3 cut(s) 91, 378, 397
Bme18I GGWCC 2 cut(s) 374, 399
BmgT120I GGNCC 3 cut(s) 88, 374, 399
BmiI GGNNCC 2 cut(s) 95, 204
BmrFI CCNGG 3 cut(s) 91, 378, 397
BmsI GCATC 1 cut(s) 198
BpuMI CCSGG 2 cut(s) 91, 378
BsaJI CCNNGG 2 cut(s) 110, 386
BsaWI WCCGGW 3 cut(s) 217, 229, 401
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 3 cut(s) 199, 391, 401
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 2 cut(s) 110, 386
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 416
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 24, 27, 189
Bsh1236I CGCG 2 cut(s) 103, 112
Bsh1285I CGRYCG 1 cut(s) 116
BshFI GGCC 4 cut(s) 89, 391, 395, 442
BshTI ACCGGT 1 cut(s) 401
BsiEI CGRYCG 1 cut(s) 116
BsiSI CCGG 7 cut(s) 91, 200, 218, 230, 377, 392, 402
BslFI GGGAC 2 cut(s) 58, 307
BslI CCNNNNNNNGG 1 cut(s) 40
BsmFI GGGAC 2 cut(s) 58, 307
BsnI GGCC 4 cut(s) 89, 391, 395, 442
Bsp1286I GDGCHC 3 cut(s) 98, 122, 383
Bsp143I GATC 1 cut(s) 126
BspANI GGCC 4 cut(s) 89, 391, 395, 442
BspCNI CTCAG 1 cut(s) 417
BspFNI CGCG 2 cut(s) 103, 112
BspLI GGNNCC 2 cut(s) 95, 204
BspPI GGATC 1 cut(s) 121
BspQI GCTCTTC 2 cut(s) 216, 424
BsrFI RCCGGY 3 cut(s) 199, 391, 401
BssAI RCCGGY 3 cut(s) 199, 391, 401
BssECI CCNNGG 2 cut(s) 110, 386
BssMI GATC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 2 cut(s) 216, 424
BstC8I GCNNGC 5 cut(s) 110, 324, 345, 383, 393
BstDEI CTNAG 1 cut(s) 425
BstDSI CCRYGG 1 cut(s) 110
BstFNI CGCG 2 cut(s) 103, 112
BstKTI GATC 1 cut(s) 129
BstMBI GATC 1 cut(s) 126
BstMCI CGRYCG 1 cut(s) 116
BstMWI GCNNNNNNNGC 4 cut(s) 109, 183, 186, 445
BstNI CCWGG 1 cut(s) 397
BstSCI CCNGG 3 cut(s) 89, 376, 395
BstUI CGCG 2 cut(s) 103, 112
BstV1I GCAGC 3 cut(s) 24, 27, 189
BsuRI GGCC 4 cut(s) 89, 391, 395, 442
BtgI CCRYGG 1 cut(s) 110
BtsI GCAGTG 1 cut(s) 83
BtsIMutI CAGTG 1 cut(s) 83
Cac8I GCNNGC 5 cut(s) 110, 324, 345, 383, 393
Cfr10I RCCGGY 3 cut(s) 199, 391, 401
Cfr13I GGNCC 3 cut(s) 88, 374, 399
Cfr42I CCGCGG 1 cut(s) 113
CseI GACGC 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 1 cut(s) 160
DdeI CTNAG 1 cut(s) 425
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
DraIII CACNNNGTG 1 cut(s) 78
Eam1104I CTCTTC 2 cut(s) 216, 424
EarI CTCTTC 2 cut(s) 216, 424
EciI GGCGGA 2 cut(s) 317, 381
Eco130I CCWWGG 1 cut(s) 386
Eco24I GRGCYC 3 cut(s) 98, 122, 383
Eco47I GGWCC 2 cut(s) 374, 399
EcoRII CCWGG 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 386
EcoT38I GRGCYC 3 cut(s) 98, 122, 383
ErhI CCWWGG 1 cut(s) 386
FaeI CATG 1 cut(s) 163
FaiI YATR 1 cut(s) 161
FaqI GGGAC 2 cut(s) 58, 307
FatI CATG 1 cut(s) 159
FauI CCCGC 4 cut(s) 117, 146, 204, 315
Fnu4HI GCNGC 9 cut(s) 13, 16, 82, 142, 178, 187, 212, 272, 440
FriOI GRGCYC 3 cut(s) 98, 122, 383
FseI GGCCGGCC 1 cut(s) 395
Fsp4HI GCNGC 9 cut(s) 13, 16, 82, 142, 178, 187, 212, 272, 440
FspBI CTAG 1 cut(s) 387
GluI GCNGC 9 cut(s) 13, 16, 82, 142, 178, 187, 212, 272, 440
HaeIII GGCC 4 cut(s) 89, 391, 395, 442
HapII CCGG 7 cut(s) 91, 200, 218, 230, 377, 392, 402
HgaI GACGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 163
HpaII CCGG 7 cut(s) 91, 200, 218, 230, 377, 392, 402
Hpy188I TCNGA 2 cut(s) 207, 237
Hpy188III TCNNGA 2 cut(s) 166, 461
Hpy99I CGWCG 3 cut(s) 103, 271, 293
HpyAV CCTTC 2 cut(s) 244, 292
HpyCH4III ACNGT 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 4 cut(s) 109, 183, 186, 445
HpyF3I CTNAG 1 cut(s) 425
Hsp92II CATG 1 cut(s) 163
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
KspI CCGCGG 1 cut(s) 113
Kzo9I GATC 1 cut(s) 126
LguI GCTCTTC 2 cut(s) 216, 424
LmnI GCTCC 5 cut(s) 69, 93, 138, 168, 174
Lsp1109I GCAGC 3 cut(s) 24, 27, 189
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 4 cut(s) 191, 410, 420, 451
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 2 cut(s) 233, 441
MhlI GDGCHC 3 cut(s) 98, 122, 383
MluCI AATT 2 cut(s) 56, 360
MnlI CCTC 3 cut(s) 36, 77, 231
MroNI GCCGGC 1 cut(s) 391
MroXI GAANNNNTTC 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 7 cut(s) 91, 200, 218, 230, 377, 392, 402
MspR9I CCNGG 3 cut(s) 91, 378, 397
MvaI CCWGG 1 cut(s) 397
MvnI CGCG 2 cut(s) 103, 112
MwoI GCNNNNNNNGC 4 cut(s) 109, 183, 186, 445
NaeI GCCGGC 1 cut(s) 393
NciI CCSGG 2 cut(s) 91, 378
NdeII GATC 1 cut(s) 126
NgoMIV GCCGGC 1 cut(s) 391
NlaIII CATG 1 cut(s) 163
NlaIV GGNNCC 2 cut(s) 95, 204
NmuCI GTSAC 2 cut(s) 191, 451
PciSI GCTCTTC 2 cut(s) 216, 424
PdiI GCCGGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 225
PflMI CCANNNNNTGG 1 cut(s) 40
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 9 cut(s) 14, 17, 83, 143, 179, 188, 213, 273, 441
Psp6I CCWGG 1 cut(s) 395
PspGI CCWGG 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 95, 204
PspPI GGNCC 3 cut(s) 88, 374, 399
RigI GGCCGGCC 1 cut(s) 395
SacII CCGCGG 1 cut(s) 113
SapI GCTCTTC 2 cut(s) 216, 424
SatI GCNGC 9 cut(s) 13, 16, 82, 142, 178, 187, 212, 272, 440
Sau3AI GATC 1 cut(s) 126
Sau96I GGNCC 3 cut(s) 88, 374, 399
ScrFI CCNGG 3 cut(s) 91, 378, 397
SduI GDGCHC 3 cut(s) 98, 122, 383
SetI ASST 7 cut(s) 28, 66, 135, 155, 228, 355, 436
SfaNI GCATC 1 cut(s) 198
Sfr303I CCGCGG 1 cut(s) 113
SgrBI CCGCGG 1 cut(s) 113
SinI GGWCC 2 cut(s) 374, 399
Sse9I AATT 2 cut(s) 56, 360
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 3 cut(s) 89, 376, 395
StyI CCWWGG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 116
TasI AATT 2 cut(s) 56, 360
TauI GCSGC 6 cut(s) 84, 144, 189, 214, 274, 442
TscAI CASTG 1 cut(s) 83
TseFI GTSAC 2 cut(s) 191, 451
TseI GCWGC 3 cut(s) 12, 15, 177
Tsp45I GTSAC 2 cut(s) 191, 451
TspGWI ACGGA 2 cut(s) 187, 398
TspRI CASTG 1 cut(s) 83
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 2 cut(s) 374, 399
XapI RAATTY 1 cut(s) 56
XmaJI CCTAGG 1 cut(s) 386
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.