FvH4_4g26860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0015902
Physical Location & Seq
Forward (+)
28068179 .. 28069366
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26860.t1

Sequence Viewer

Length: 447 bp
ATGGCAGTTTGCAGAAGCAGCAACAAACCTGAAAAGATGGCGACTTTGCAGAAATTCAAGCTCCTTGCTCTGCACTGCGGAGCGGCGCAGAGCCCGACGAGAAGCCCGAGGACGAGCCCGTTGATCCAGCTCCGTCGCCGGAAGCCGAGCCTGTTAATGCTTCTCAGCCGGAGCGGGAGCCGGCGATCGTCGCAACGACGGGAGTCGCCGGCGCCGGTGGAGTCGCCGCCGGAGAGGAGGAACAGCCTGAAGGACCTGTTTGTGTCGTCGCCGCCTTTTGAAGGGTTTGAGAAGATGGAGAAGCGGCCGGAGTTTGGGTTGGTGGTGGTGGCTAGAGGAGGAGGAGGAGTTGGACCGGGTTCGCCGAGACCGGGTTGGACCGGTTTCCGGTATAAGTCTTTGTTGAGGAGGGCATGGCGGCCGGTGTTGGTTACTATTCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

16.51

Weight (kDa)

11.65

Isoelectric Point (pI)

108.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68430
fragaria_vesca FvH4_4g26860
malus_domestica MD13G1036300.v1.1 MD16G1038900.v1.1
prunus_persica Prupe.1G315800_v2.0.a1
pyrus_communis pycom13g03160 pycom16g03330
rosa_chinensis RchiOBHm_Chr4g0434621
rosa_laevigata RLG00000006662
rosa_multiflora Rmu_sc0005783.1_g000003 Rmu_sc0005899.1_g000016
rosa_rugosa Rorug04G0277200
rosa_samantha Rh4BG341300 Rh4CG356100
rosa_wichuraiana Rw4G028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 211
AccBSI CCGCTC 2 cut(s) 83, 174
AciI CCGC 7 cut(s) 78, 83, 174, 227, 272, 304, 418
AclWI GGATC 1 cut(s) 118
AcoI YGGCCR 2 cut(s) 305, 419
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 212
AfiI CCNNNNNNNGG 4 cut(s) 281, 314, 371, 387
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 2 cut(s) 58, 281
AluBI AGCT 2 cut(s) 61, 130
AluI AGCT 2 cut(s) 61, 130
Alw26I GTCTC 1 cut(s) 361
AlwI GGATC 1 cut(s) 118
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 2 cut(s) 305, 419
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 53
AsiGI ACCGGT 1 cut(s) 380
AspLEI GCGC 2 cut(s) 88, 214
AspS9I GGNCC 3 cut(s) 253, 353, 378
AsuC2I CCSGG 2 cut(s) 357, 372
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 3 cut(s) 253, 353, 378
BanI GGYRCC 1 cut(s) 211
BanII GRGCYC 2 cut(s) 95, 119
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 31, 289
BcnI CCSGG 2 cut(s) 357, 372
BcoDI GTCTC 1 cut(s) 361
BfaI CTAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 215
BisI GCNGC 6 cut(s) 19, 84, 227, 272, 305, 419
BlsI GCNGC 6 cut(s) 20, 85, 228, 273, 306, 420
Bme1390I CCNGG 2 cut(s) 357, 372
Bme18I GGWCC 3 cut(s) 253, 353, 378
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 3 cut(s) 253, 353, 378
BmiI GGNNCC 2 cut(s) 179, 213
BmrFI CCNGG 2 cut(s) 357, 372
BoxI GACNNNNGTC 1 cut(s) 202
BpuMI CCSGG 2 cut(s) 357, 372
BsaHI GRCGYC 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 361
BsaJI CCNNGG 1 cut(s) 107
BsaWI WCCGGW 2 cut(s) 380, 387
BsaXI ACNNNNNCTCC 4 cut(s) 302, 332, 333, 363
Bsc4I CCNNNNNNNGG 4 cut(s) 281, 314, 371, 387
Bse118I RCCGGY 5 cut(s) 180, 208, 214, 380, 421
BseDI CCNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 4 cut(s) 281, 314, 371, 387
BseMII CTCAG 2 cut(s) 178, 432
BseRI GAGGAG 6 cut(s) 250, 351, 354, 357, 360, 421
BseX3I CGGCCG 2 cut(s) 305, 419
BseXI GCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 56
Bsh1285I CGRYCG 3 cut(s) 188, 308, 422
BshFI GGCC 2 cut(s) 307, 421
BshNI GGYRCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 380
BsiEI CGRYCG 3 cut(s) 188, 308, 422
BsiHKCI CYCGRG 1 cut(s) 106
BslI CCNNNNNNNGG 4 cut(s) 281, 314, 371, 387
BsmAI GTCTC 1 cut(s) 361
BsnI GGCC 2 cut(s) 307, 421
Bso31I GGTCTC 1 cut(s) 361
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 2 cut(s) 95, 119
Bsp143I GATC 2 cut(s) 123, 185
BspACI CCGC 7 cut(s) 78, 83, 174, 227, 272, 304, 418
BspANI GGCC 2 cut(s) 307, 421
BspCNI CTCAG 2 cut(s) 177, 433
BspLI GGNNCC 2 cut(s) 179, 213
BspPI GGATC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 211
BspTNI GGTCTC 1 cut(s) 361
BsrBI CCGCTC 2 cut(s) 83, 174
BsrFI RCCGGY 5 cut(s) 180, 208, 214, 380, 421
BssAI RCCGGY 5 cut(s) 180, 208, 214, 380, 421
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 2 cut(s) 123, 185
BssNI GRCGYC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 182, 210
BstDEI CTNAG 2 cut(s) 164, 441
BstENI CCTNNNNNAGG 1 cut(s) 279
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 2 cut(s) 88, 214
BstKTI GATC 2 cut(s) 126, 188
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 123, 185
BstMCI CGRYCG 3 cut(s) 188, 308, 422
BstMWI GCNNNNNNNGC 2 cut(s) 18, 190
BstPAI GACNNNNGTC 1 cut(s) 202
BstSCI CCNGG 2 cut(s) 355, 370
BstV1I GCAGC 1 cut(s) 30
BstZI CGGCCG 2 cut(s) 305, 419
BsuRI GGCC 2 cut(s) 307, 421
BtsI GCAGTG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 2 cut(s) 182, 210
CfoI GCGC 2 cut(s) 88, 214
Cfr10I RCCGGY 5 cut(s) 180, 208, 214, 380, 421
Cfr13I GGNCC 3 cut(s) 253, 353, 378
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 1 cut(s) 414
DdeI CTNAG 2 cut(s) 164, 441
DinI GGCGCC 1 cut(s) 213
DpnI GATC 2 cut(s) 125, 187
DpnII GATC 2 cut(s) 123, 185
EaeI YGGCCR 2 cut(s) 305, 419
EagI CGGCCG 2 cut(s) 305, 419
EclXI CGGCCG 2 cut(s) 305, 419
Eco24I GRGCYC 2 cut(s) 95, 119
Eco31I GGTCTC 1 cut(s) 361
Eco47I GGWCC 3 cut(s) 253, 353, 378
Eco52I CGGCCG 2 cut(s) 305, 419
Eco57I CTGAAG 1 cut(s) 269
Eco88I CYCGRG 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 95, 119
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 1 cut(s) 417
FaiI YATR 2 cut(s) 393, 415
FatI CATG 1 cut(s) 413
FauI CCCGC 1 cut(s) 167
Fnu4HI GCNGC 6 cut(s) 19, 84, 227, 272, 305, 419
FriOI GRGCYC 2 cut(s) 95, 119
Fsp4HI GCNGC 6 cut(s) 19, 84, 227, 272, 305, 419
FspBI CTAG 1 cut(s) 333
GlaI GCGC 2 cut(s) 87, 213
GluI GCNGC 6 cut(s) 19, 84, 227, 272, 305, 419
HaeII RGCGCY 1 cut(s) 215
HaeIII GGCC 2 cut(s) 307, 421
HhaI GCGC 2 cut(s) 88, 214
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 1 cut(s) 417
Hin6I GCGC 2 cut(s) 86, 212
HinP1I GCGC 2 cut(s) 86, 212
HinfI GANTC 2 cut(s) 203, 221
Hpy188III TCNNGA 1 cut(s) 440
Hpy99I CGWCG 5 cut(s) 100, 138, 193, 201, 271
HpyAV CCTTC 2 cut(s) 244, 275
HpyCH4V TGCA 3 cut(s) 12, 49, 73
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 190
HpyF3I CTNAG 2 cut(s) 164, 441
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 417
HspAI GCGC 2 cut(s) 86, 212
KasI GGCGCC 1 cut(s) 211
KroI GCCGGC 2 cut(s) 180, 208
KroNI GCCGGC 2 cut(s) 182, 210
Kzo9I GATC 2 cut(s) 123, 185
LmnI GCTCC 5 cut(s) 66, 80, 135, 171, 177
Lsp1109I GCAGC 1 cut(s) 30
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 430
MalI GATC 2 cut(s) 125, 187
MbiI CCGCTC 2 cut(s) 83, 174
MboI GATC 2 cut(s) 123, 185
MboII GAAGA 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 95, 119
MluCI AATT 1 cut(s) 53
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 2 cut(s) 212, 230
MmeI TCCRAC 2 cut(s) 331, 356
MnlI CCTC 9 cut(s) 102, 228, 231, 329, 332, 335, 338, 399, 402
MreI CGCCGGCG 1 cut(s) 208
MroNI GCCGGC 2 cut(s) 180, 208
MseI TTAA 1 cut(s) 155
MspR9I CCNGG 2 cut(s) 357, 372
MwoI GCNNNNNNNGC 2 cut(s) 18, 190
NaeI GCCGGC 2 cut(s) 182, 210
NarI GGCGCC 1 cut(s) 212
NciI CCSGG 2 cut(s) 357, 372
NdeII GATC 2 cut(s) 123, 185
NgoMIV GCCGGC 2 cut(s) 180, 208
NlaIII CATG 1 cut(s) 417
NlaIV GGNNCC 2 cut(s) 179, 213
NmeAIII GCCGAG 2 cut(s) 171, 390
PcsI WCGNNNNNNNCGW 1 cut(s) 104
PdiI GCCGGC 2 cut(s) 182, 210
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 6 cut(s) 20, 85, 228, 273, 306, 420
Ple19I CGATCG 1 cut(s) 188
PleI GAGTC 2 cut(s) 211, 229
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 2 cut(s) 211, 229
PpuMI RGGWCCY 1 cut(s) 253
PshAI GACNNNNGTC 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 179, 213
PspPI GGNCC 3 cut(s) 253, 353, 378
PspPPI RGGWCCY 1 cut(s) 253
PvuI CGATCG 1 cut(s) 188
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 6 cut(s) 19, 84, 227, 272, 305, 419
Sau3AI GATC 2 cut(s) 123, 185
Sau96I GGNCC 3 cut(s) 253, 353, 378
SchI GAGTC 2 cut(s) 212, 230
ScrFI CCNGG 2 cut(s) 357, 372
SduI GDGCHC 2 cut(s) 95, 119
SetI ASST 4 cut(s) 31, 63, 132, 258
SfoI GGCGCC 1 cut(s) 213
SgrAI CRCCGGYG 2 cut(s) 208, 214
SinI GGWCC 3 cut(s) 253, 353, 378
Sse9I AATT 1 cut(s) 53
SsiI CCGC 7 cut(s) 78, 83, 174, 227, 272, 304, 418
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 2 cut(s) 355, 370
TasI AATT 1 cut(s) 53
TauI GCSGC 5 cut(s) 86, 229, 274, 307, 421
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TscAI CASTG 1 cut(s) 80
TseI GCWGC 1 cut(s) 18
TspGWI ACGGA 1 cut(s) 122
TspRI CASTG 1 cut(s) 80
VpaK11BI GGWCC 3 cut(s) 253, 353, 378
XagI CCTNNNNNAGG 1 cut(s) 279
XapI RAATTY 1 cut(s) 53
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.