Rh4BG341300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0015902
Physical Location & Seq
Forward (+)
50369076 .. 50369357
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG341300.1

Sequence Viewer

Length: 282 bp
ATGCTTCTTAGCCGGAGCGGGAGCCGGCGATCGACGAGACGACAGGACCAGCCGGTGCCTGTGCAGCCGCCGCCGGAGAGGAGGAACAGCCTGAAGGACCTGTTTGTGTCGTCCCCGCCTTTTGAAGAGAGTGAGAAAATAGAGAAGCGGCGAGAGTTTGGGTTGGTAGTGGTAGCCGGTGGAGTTGGACCGGGTTCGCCTAGACCGGGGTGGACCGGTTTCCGGTACAAGTCGTTGTTGAGGAGGGCTTGGCGTCCTGTGTTGGTTACTATTCCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.57

Weight (kDa)

11.47

Isoelectric Point (pI)

112.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68430
fragaria_vesca FvH4_4g26860
malus_domestica MD13G1036300.v1.1 MD16G1038900.v1.1
prunus_persica Prupe.1G315800_v2.0.a1
pyrus_communis pycom13g03160 pycom16g03330
rosa_chinensis RchiOBHm_Chr4g0434621
rosa_laevigata RLG00000006662
rosa_multiflora Rmu_sc0005783.1_g000003 Rmu_sc0005899.1_g000016
rosa_rugosa Rorug04G0277200
rosa_samantha Rh4BG341300 Rh4CG356100
rosa_wichuraiana Rw4G028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 55
AccBSI CCGCTC 1 cut(s) 18
AciI CCGC 5 cut(s) 18, 68, 71, 116, 148
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 253
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 2 cut(s) 206, 222
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 64
AsiGI ACCGGT 1 cut(s) 215
AspS9I GGNCC 4 cut(s) 46, 97, 188, 213
AsuC2I CCSGG 2 cut(s) 192, 207
AvaII GGWCC 4 cut(s) 46, 97, 188, 213
BanI GGYRCC 1 cut(s) 55
BbvI GCAGC 1 cut(s) 76
BcnI CCSGG 2 cut(s) 192, 207
BcoDI GTCTC 1 cut(s) 31
BfaI CTAG 1 cut(s) 201
BisI GCNGC 4 cut(s) 65, 68, 71, 149
BlsI GCNGC 4 cut(s) 66, 69, 72, 150
Bme1390I CCNGG 2 cut(s) 192, 207
Bme18I GGWCC 4 cut(s) 46, 97, 188, 213
BmgT120I GGNCC 4 cut(s) 46, 97, 188, 213
BmiI GGNNCC 2 cut(s) 23, 57
BmrFI CCNGG 2 cut(s) 192, 207
BpuMI CCSGG 2 cut(s) 192, 207
BsaHI GRCGYC 1 cut(s) 253
BsaJI CCNNGG 1 cut(s) 206
BsaWI WCCGGW 2 cut(s) 215, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 222
Bse118I RCCGGY 4 cut(s) 24, 52, 176, 215
BseDI CCNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 206, 222
BseMII CTCAG 1 cut(s) 267
BseRI GAGGAG 2 cut(s) 94, 256
BseXI GCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 83
Bsh1285I CGRYCG 1 cut(s) 32
BshNI GGYRCC 1 cut(s) 55
BshTI ACCGGT 1 cut(s) 215
BsiEI CGRYCG 1 cut(s) 32
BsiSI CCGG 9 cut(s) 13, 25, 53, 74, 177, 191, 206, 216, 223
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 2 cut(s) 206, 222
BsmAI GTCTC 1 cut(s) 31
BsmBI CGTCTC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 97
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 5 cut(s) 18, 68, 71, 116, 148
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 23, 57
BspT107I GGYRCC 1 cut(s) 55
BsrBI CCGCTC 1 cut(s) 18
BsrFI RCCGGY 4 cut(s) 24, 52, 176, 215
BssAI RCCGGY 4 cut(s) 24, 52, 176, 215
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 1 cut(s) 29
BssNI GRCGYC 1 cut(s) 253
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 8, 276
BstKTI GATC 1 cut(s) 32
BstMAI GTCTC 1 cut(s) 31
BstMBI GATC 1 cut(s) 29
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 64, 70
BstSCI CCNGG 2 cut(s) 190, 205
BstV1I GCAGC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 26
Cfr10I RCCGGY 4 cut(s) 24, 52, 176, 215
Cfr13I GGNCC 4 cut(s) 46, 97, 188, 213
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 226
CspAI ACCGGT 1 cut(s) 215
CviJI RGCY 7 cut(s) 12, 24, 52, 67, 90, 176, 248
CviKI_1 RGCY 7 cut(s) 12, 24, 52, 67, 90, 176, 248
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 2 cut(s) 8, 276
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eam1104I CTCTTC 1 cut(s) 120
EarI CTCTTC 1 cut(s) 120
Eco47I GGWCC 4 cut(s) 46, 97, 188, 213
Eco57I CTGAAG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 31
FaqI GGGAC 1 cut(s) 97
FauI CCCGC 2 cut(s) 11, 123
Fnu4HI GCNGC 4 cut(s) 65, 68, 71, 149
Fsp4HI GCNGC 4 cut(s) 65, 68, 71, 149
FspBI CTAG 1 cut(s) 201
GluI GCNGC 4 cut(s) 65, 68, 71, 149
HapII CCGG 9 cut(s) 13, 25, 53, 74, 177, 191, 206, 216, 223
HgaI GACGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 253
HpaII CCGG 9 cut(s) 13, 25, 53, 74, 177, 191, 206, 216, 223
Hpy166II GTNNAC 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 275
Hpy8I GTNNAC 1 cut(s) 213
Hpy99I CGWCG 1 cut(s) 37
HpyAV CCTTC 1 cut(s) 88
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 70
HpyF3I CTNAG 2 cut(s) 8, 276
Hsp92I GRCGYC 1 cut(s) 253
KroI GCCGGC 1 cut(s) 24
KroNI GCCGGC 1 cut(s) 26
Kzo9I GATC 1 cut(s) 29
LmnI GCTCC 2 cut(s) 15, 21
Lsp1109I GCAGC 1 cut(s) 76
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 265
MalI GATC 1 cut(s) 31
MbiI CCGCTC 1 cut(s) 18
MboI GATC 1 cut(s) 29
MboII GAAGA 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 166
MnlI CCTC 4 cut(s) 72, 75, 234, 237
MroNI GCCGGC 1 cut(s) 24
MspI CCGG 9 cut(s) 13, 25, 53, 74, 177, 191, 206, 216, 223
MspR9I CCNGG 2 cut(s) 192, 207
MwoI GCNNNNNNNGC 2 cut(s) 64, 70
NaeI GCCGGC 1 cut(s) 26
NciI CCSGG 2 cut(s) 192, 207
NdeII GATC 1 cut(s) 29
NgoMIV GCCGGC 1 cut(s) 24
NlaIV GGNNCC 2 cut(s) 23, 57
PdiI GCCGGC 1 cut(s) 26
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 4 cut(s) 66, 69, 72, 150
Ple19I CGATCG 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 23, 57
PspPI GGNCC 4 cut(s) 46, 97, 188, 213
PspPPI RGGWCCY 1 cut(s) 97
PvuI CGATCG 1 cut(s) 32
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SatI GCNGC 4 cut(s) 65, 68, 71, 149
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 4 cut(s) 46, 97, 188, 213
ScrFI CCNGG 2 cut(s) 192, 207
SetI ASST 1 cut(s) 102
SinI GGWCC 4 cut(s) 46, 97, 188, 213
SsiI CCGC 5 cut(s) 18, 68, 71, 116, 148
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 2 cut(s) 190, 205
TaqI TCGA 1 cut(s) 32
TauI GCSGC 3 cut(s) 70, 73, 151
TseI GCWGC 1 cut(s) 64
VpaK11BI GGWCC 4 cut(s) 46, 97, 188, 213
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.