MD16G1038900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0015902
Physical Location & Seq
Forward (+)
2752222 .. 2752650
429 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1038900.v1.1.491

Sequence Viewer

Length: 429 bp
ATGGGGACTTTACAGAAATTCAAGCTCCTCGCCACGCAGTGCGGCGTGGCCCAGAGCCCGACGCGAAGCCCGCGGTCGAGCCCCTTGATCCAGCTCCCCCGCCGCAAACCCACTTTGCTCATGCTCCTGACCCGGAGCAGCAGTCGCCGCCGTGACCCGCCGGTTCCGATGCCACTACCGGAAGAGCTTCCGGTTCAGAGGAACAGTTTGAAGGACTTGTTTGTGTCGTCGCCGCCATTTGAGTTGAACGACGGGAGGAAGGCGGAGAGTGAGAGAGATAAGCGAGCAGAGTTCGGTAGTTTGGGGGCGGTGGGTAAAGAAATTGGTGGATTTGGACCGGGCTCGCCTAGGCCGGCCTGGACCGGTTTCCGTTACAAGTCGTTAATGAGAAGGGCTTGGCGCCCTGTGCTCGTCACTATTCCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.86

Weight (kDa)

11.24

Isoelectric Point (pI)

84.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68430
fragaria_vesca FvH4_4g26860
malus_domestica MD13G1036300.v1.1 MD16G1038900.v1.1
prunus_persica Prupe.1G315800_v2.0.a1
pyrus_communis pycom13g03160 pycom16g03330
rosa_chinensis RchiOBHm_Chr4g0434621
rosa_laevigata RLG00000006662
rosa_multiflora Rmu_sc0005783.1_g000003 Rmu_sc0005899.1_g000016
rosa_rugosa Rorug04G0277200
rosa_samantha Rh4BG341300 Rh4CG356100
rosa_wichuraiana Rw4G028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 399
AccII CGCG 2 cut(s) 64, 73
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 17
AcyI GRCGYC 1 cut(s) 400
AdeI CACNNNGTG 1 cut(s) 39
AgeI ACCGGT 1 cut(s) 362
AgsI TTSAA 3 cut(s) 22, 211, 247
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 3 cut(s) 25, 94, 187
AluI AGCT 3 cut(s) 25, 94, 187
Alw21I GWGCWC 1 cut(s) 411
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 3 cut(s) 48, 350, 354
ApeKI GCWGC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 17
AsiGI ACCGGT 1 cut(s) 362
Asp700I GAANNNNTTC 1 cut(s) 186
AspA2I CCTAGG 1 cut(s) 347
AspLEI GCGC 1 cut(s) 402
AspS9I GGNCC 3 cut(s) 49, 335, 360
AsuC2I CCSGG 2 cut(s) 133, 339
AvaI CYCGRG 1 cut(s) 422
AvaII GGWCC 2 cut(s) 335, 360
AvrII CCTAGG 1 cut(s) 347
BanI GGYRCC 1 cut(s) 399
BanII GRGCYC 3 cut(s) 59, 83, 344
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 1 cut(s) 150
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 1 cut(s) 358
BcnI CCSGG 2 cut(s) 133, 339
BfaI CTAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 403
BisI GCNGC 5 cut(s) 43, 103, 139, 148, 233
BlnI CCTAGG 1 cut(s) 347
BlsI GCNGC 5 cut(s) 44, 104, 140, 149, 234
Bme1390I CCNGG 3 cut(s) 133, 339, 358
Bme18I GGWCC 2 cut(s) 335, 360
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 3 cut(s) 49, 335, 360
BmiI GGNNCC 2 cut(s) 165, 401
BmrFI CCNGG 3 cut(s) 133, 339, 358
BmsI GCATC 1 cut(s) 159
BpuMI CCSGG 2 cut(s) 133, 339
BsaHI GRCGYC 1 cut(s) 400
BsaJI CCNNGG 2 cut(s) 71, 347
BsaWI WCCGGW 3 cut(s) 178, 190, 362
BsaXI ACNNNNNCTCC 2 cut(s) 127, 157
Bse118I RCCGGY 3 cut(s) 160, 352, 362
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 2 cut(s) 71, 347
BseRI GAGGAG 1 cut(s) 17
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 2 cut(s) 64, 73
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 3 cut(s) 50, 352, 356
BshNI GGYRCC 1 cut(s) 399
BshTI ACCGGT 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 411
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 7 cut(s) 133, 161, 179, 191, 338, 353, 363
BslFI GGGAC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 3 cut(s) 50, 352, 356
BsoBI CYCGRG 1 cut(s) 422
Bsp1286I GDGCHC 4 cut(s) 59, 83, 344, 411
Bsp143I GATC 1 cut(s) 87
BspANI GGCC 3 cut(s) 50, 352, 356
BspFNI CGCG 2 cut(s) 64, 73
BspLI GGNNCC 2 cut(s) 165, 401
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 177
BspT107I GGYRCC 1 cut(s) 399
BsrFI RCCGGY 3 cut(s) 160, 352, 362
BssAI RCCGGY 3 cut(s) 160, 352, 362
BssECI CCNNGG 2 cut(s) 71, 347
BssMI GATC 1 cut(s) 87
BssNI GRCGYC 1 cut(s) 400
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 400
BstC8I GCNNGC 4 cut(s) 71, 285, 344, 354
BstDSI CCRYGG 1 cut(s) 71
BstFNI CGCG 2 cut(s) 64, 73
BstH2I RGCGCY 1 cut(s) 403
BstHHI GCGC 1 cut(s) 402
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 4 cut(s) 70, 144, 147, 406
BstNI CCWGG 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 131, 337, 356
BstUI CGCG 2 cut(s) 64, 73
BstV1I GCAGC 1 cut(s) 150
BsuRI GGCC 3 cut(s) 50, 352, 356
BtgI CCRYGG 1 cut(s) 71
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 1 cut(s) 44
Cac8I GCNNGC 4 cut(s) 71, 285, 344, 354
CfoI GCGC 1 cut(s) 402
Cfr10I RCCGGY 3 cut(s) 160, 352, 362
Cfr13I GGNCC 3 cut(s) 49, 335, 360
Cfr42I CCGCGG 1 cut(s) 74
CseI GACGC 1 cut(s) 70
CspAI ACCGGT 1 cut(s) 362
CviAII CATG 1 cut(s) 121
DinI GGCGCC 1 cut(s) 401
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DraIII CACNNNGTG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 278
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 3 cut(s) 59, 83, 344
Eco47I GGWCC 2 cut(s) 335, 360
Eco88I CYCGRG 1 cut(s) 422
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 3 cut(s) 59, 83, 344
EgeI GGCGCC 1 cut(s) 401
EheI GGCGCC 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 347
FaeI CATG 1 cut(s) 124
FaiI YATR 1 cut(s) 122
FaqI GGGAC 1 cut(s) 19
FatI CATG 1 cut(s) 120
FauI CCCGC 3 cut(s) 78, 107, 165
Fnu4HI GCNGC 5 cut(s) 43, 103, 139, 148, 233
FriOI GRGCYC 3 cut(s) 59, 83, 344
FseI GGCCGGCC 1 cut(s) 356
Fsp4HI GCNGC 5 cut(s) 43, 103, 139, 148, 233
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 401
GluI GCNGC 5 cut(s) 43, 103, 139, 148, 233
HaeII RGCGCY 1 cut(s) 403
HaeIII GGCC 3 cut(s) 50, 352, 356
HapII CCGG 7 cut(s) 133, 161, 179, 191, 338, 353, 363
HgaI GACGC 1 cut(s) 70
HhaI GCGC 1 cut(s) 402
Hin1I GRCGYC 1 cut(s) 400
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 400
HinP1I GCGC 1 cut(s) 400
HpaII CCGG 7 cut(s) 133, 161, 179, 191, 338, 353, 363
Hpy188I TCNGA 2 cut(s) 168, 198
Hpy188III TCNNGA 2 cut(s) 127, 422
Hpy99I CGWCG 3 cut(s) 64, 232, 254
HpyAV CCTTC 3 cut(s) 205, 253, 384
HpyCH4III ACNGT 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 144, 147, 406
Hsp92I GRCGYC 1 cut(s) 400
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 400
KasI GGCGCC 1 cut(s) 399
KroI GCCGGC 1 cut(s) 352
KroNI GCCGGC 1 cut(s) 354
KspI CCGCGG 1 cut(s) 74
Kzo9I GATC 1 cut(s) 87
LguI GCTCTTC 1 cut(s) 177
LmnI GCTCC 4 cut(s) 30, 99, 129, 135
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 3 cut(s) 152, 371, 412
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 1 cut(s) 194
MhlI GDGCHC 4 cut(s) 59, 83, 344, 411
MluCI AATT 2 cut(s) 17, 321
Mly113I GGCGCC 1 cut(s) 400
MnlI CCTC 3 cut(s) 38, 192, 249
MroNI GCCGGC 1 cut(s) 352
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 73
MspI CCGG 7 cut(s) 133, 161, 179, 191, 338, 353, 363
MspR9I CCNGG 3 cut(s) 133, 339, 358
MvaI CCWGG 1 cut(s) 358
MvnI CGCG 2 cut(s) 64, 73
MwoI GCNNNNNNNGC 4 cut(s) 70, 144, 147, 406
NaeI GCCGGC 1 cut(s) 354
NarI GGCGCC 1 cut(s) 400
NciI CCSGG 2 cut(s) 133, 339
NdeII GATC 1 cut(s) 87
NgoMIV GCCGGC 1 cut(s) 352
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 2 cut(s) 165, 401
NmuCI GTSAC 2 cut(s) 152, 412
PciSI GCTCTTC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 354
PdmI GAANNNNTTC 1 cut(s) 186
PinAI ACCGGT 1 cut(s) 362
PkrI GCNGC 5 cut(s) 44, 104, 140, 149, 234
PluTI GGCGCC 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 2 cut(s) 165, 401
PspPI GGNCC 3 cut(s) 49, 335, 360
RigI GGCCGGCC 1 cut(s) 356
SacII CCGCGG 1 cut(s) 74
SapI GCTCTTC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 5 cut(s) 43, 103, 139, 148, 233
Sau3AI GATC 1 cut(s) 87
Sau96I GGNCC 3 cut(s) 49, 335, 360
ScrFI CCNGG 3 cut(s) 133, 339, 358
SduI GDGCHC 4 cut(s) 59, 83, 344, 411
SetI ASST 3 cut(s) 27, 96, 189
SfaNI GCATC 1 cut(s) 159
SfoI GGCGCC 1 cut(s) 401
Sfr303I CCGCGG 1 cut(s) 74
SgrBI CCGCGG 1 cut(s) 74
SinI GGWCC 2 cut(s) 335, 360
Sse9I AATT 2 cut(s) 17, 321
SspDI GGCGCC 1 cut(s) 399
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 3 cut(s) 131, 337, 356
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 77
TasI AATT 2 cut(s) 17, 321
TauI GCSGC 4 cut(s) 45, 105, 150, 235
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 1 cut(s) 44
TseFI GTSAC 2 cut(s) 152, 412
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 2 cut(s) 152, 412
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 44
VpaK11BI GGWCC 2 cut(s) 335, 360
XapI RAATTY 1 cut(s) 17
XmaJI CCTAGG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.