pycom13g03160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0015902
Physical Location & Seq
Forward (+)
2129229 .. 2130472
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g03160.6

Sequence Viewer

Length: 981 bp
ATGAGGAATTTTTTTAAAATTATAATAATTATAATTATTAAATTAAAAATCAATGATCCATTTGCTCAAAAGACTCAACTTCTTAACTTCTTCAGTCAAAGTATGAGGTGGTGTCGCCTCTTTTTCAGAACCCTATGTAGAATTTCAGATTTTGGATTCAGCACCTTTGGAATTTCACTTGGAAAGGCACCCACTTTCTCTCTCTTTTTTGAATTTGTGAAAAAAGAGAAAATTACCAATCATTATTTGATTATATATTATTACATAATTAAAAGAAAGTTTATTATTCAAATTGAGAAAAATAATAAGGAAACCATCCCTAAATTTATTGAGAAAAATTTAACACAATATTTTATAATTTTGTCTTATCTAAAATTAGAGAGTGTACTTAGCATTAATAAAAAAAGTGTGTATATAAAAGATGCATCCACTTCCCAACATATCCTTTTCTCCATTTCACAAGCAATCAATTGTGTCTCAGTCTCTCCCCTGCAATCATTCTCCAATTTAAATTCAAATATTCACCCCAAAATTTACATACCTCAAATCCAGAAGATGGGGACTTTACAGAAATTCAAGCTCCTCGCCACGCAGTGCGGCGTGGCCCAGAGCCCGACGCGAAGCCCGCGGACGAGCCCGTTGATCCAGTTCCGCCGCCGCAAACCCACCTTGCTGATGCTCCTGACCCGGAGCAGCAGTCGCCGCAGTGACCCGCCGGTTCCGATGCCGCTACCGGAGAATATTCCGCCCCAGAGGAACAGTCTGAAGGACCTGTTCGTGTCGTCGCCGCCATTTGAGTTGAACGACCGGGGGAAGGCGGAGAGTGAGAGAGATAAGCGGGCAGAGTTGGGTAGTTTGTTGGTAGGTAAAGAAATTGGTGGAGTTGGACCGGGCTCCCCTAGGCCGGCCTGGACCGGTTTTCGTTACAAGTCGTTACTGAGAAGGGCTTGGCGCCCTGTGCTCGTCACTATTCCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

37.63

Weight (kDa)

10.35

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015902)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68430
fragaria_vesca FvH4_4g26860
malus_domestica MD13G1036300.v1.1 MD16G1038900.v1.1
prunus_persica Prupe.1G315800_v2.0.a1
pyrus_communis pycom13g03160 pycom16g03330
rosa_chinensis RchiOBHm_Chr4g0434621
rosa_laevigata RLG00000006662
rosa_multiflora Rmu_sc0005783.1_g000003 Rmu_sc0005899.1_g000016
rosa_rugosa Rorug04G0277200
rosa_samantha Rh4BG341300 Rh4CG356100
rosa_wichuraiana Rw4G028900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 23, 32, 356
AccB1I GGYRCC 2 cut(s) 187, 951
AccB7I CCANNNNNTGG 1 cut(s) 556
AccII CGCG 2 cut(s) 619, 628
AclWI GGATC 2 cut(s) 50, 637
AcsI RAATTY 9 cut(s) 7, 141, 171, 212, 323, 337, 511, 531, 572
AcuI CTGAAG 2 cut(s) 76, 785
AcyI GRCGYC 1 cut(s) 952
AdeI CACNNNGTG 1 cut(s) 594
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 3 cut(s) 556, 814, 904
AgeI ACCGGT 1 cut(s) 914
AgsI TTSAA 5 cut(s) 212, 290, 516, 577, 802
AjnI CCWGG 1 cut(s) 908
AluBI AGCT 1 cut(s) 580
AluI AGCT 1 cut(s) 580
Alw21I GWGCWC 1 cut(s) 963
Alw26I GTCTC 2 cut(s) 481, 487
AlwI GGATC 2 cut(s) 50, 637
Ama87I CYCGRG 1 cut(s) 974
AoxI GGCC 3 cut(s) 603, 902, 906
ApeKI GCWGC 1 cut(s) 693
ApoI RAATTY 9 cut(s) 7, 141, 171, 212, 323, 337, 511, 531, 572
AseI ATTAAT 1 cut(s) 396
AsiGI ACCGGT 1 cut(s) 914
AspA2I CCTAGG 1 cut(s) 899
AspLEI GCGC 1 cut(s) 954
AspS9I GGNCC 4 cut(s) 604, 769, 887, 912
AsuC2I CCSGG 3 cut(s) 688, 809, 891
AsuHPI GGTGA 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 974
AvaII GGWCC 3 cut(s) 769, 887, 912
AvrII CCTAGG 1 cut(s) 899
BanI GGYRCC 2 cut(s) 187, 951
BanII GRGCYC 3 cut(s) 614, 638, 896
Bbv12I GWGCWC 1 cut(s) 963
BbvI GCAGC 1 cut(s) 705
BccI CCATC 2 cut(s) 323, 550
BciT130I CCWGG 1 cut(s) 910
BcnI CCSGG 3 cut(s) 688, 809, 891
BcoDI GTCTC 2 cut(s) 481, 487
BfaI CTAG 1 cut(s) 900
BfoI RGCGCY 1 cut(s) 955
BisI GCNGC 7 cut(s) 598, 655, 658, 694, 703, 728, 788
BlnI CCTAGG 1 cut(s) 899
BlsI GCNGC 7 cut(s) 599, 656, 659, 695, 704, 729, 789
Bme1390I CCNGG 4 cut(s) 688, 809, 891, 910
Bme18I GGWCC 3 cut(s) 769, 887, 912
BmeT110I CYCGRG 1 cut(s) 974
BmgT120I GGNCC 4 cut(s) 604, 769, 887, 912
BmiI GGNNCC 4 cut(s) 189, 720, 895, 953
BmrFI CCNGG 4 cut(s) 688, 809, 891, 910
BmsI GCATC 4 cut(s) 412, 434, 666, 714
BpuMI CCSGG 3 cut(s) 688, 809, 891
BsaHI GRCGYC 1 cut(s) 952
BsaJI CCNNGG 3 cut(s) 626, 808, 899
BsaWI WCCGGW 2 cut(s) 733, 914
BsaXI ACNNNNNCTCC 2 cut(s) 682, 712
Bsc4I CCNNNNNNNGG 3 cut(s) 556, 814, 904
Bse118I RCCGGY 3 cut(s) 715, 904, 914
Bse1I ACTGG 1 cut(s) 646
BseBI CCWGG 1 cut(s) 910
BseDI CCNNGG 3 cut(s) 626, 808, 899
BseGI GGATG 2 cut(s) 315, 425
BseLI CCNNNNNNNGG 3 cut(s) 556, 814, 904
BseMII CTCAG 2 cut(s) 492, 929
BseNI ACTGG 1 cut(s) 646
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 705
Bsh1236I CGCG 2 cut(s) 619, 628
Bsh1285I CGRYCG 1 cut(s) 808
BshFI GGCC 3 cut(s) 605, 904, 908
BshNI GGYRCC 2 cut(s) 187, 951
BshTI ACCGGT 1 cut(s) 914
BsiEI CGRYCG 1 cut(s) 808
BsiHKAI GWGCWC 1 cut(s) 963
BsiHKCI CYCGRG 1 cut(s) 974
BsiSI CCGG 7 cut(s) 688, 716, 734, 808, 890, 905, 915
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 3 cut(s) 556, 814, 904
BsmAI GTCTC 2 cut(s) 481, 487
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 3 cut(s) 605, 904, 908
BsoBI CYCGRG 1 cut(s) 974
Bsp1286I GDGCHC 4 cut(s) 614, 638, 896, 963
Bsp143I GATC 2 cut(s) 55, 642
BspANI GGCC 3 cut(s) 605, 904, 908
BspCNI CTCAG 2 cut(s) 491, 930
BspFNI CGCG 2 cut(s) 619, 628
BspLI GGNNCC 4 cut(s) 189, 720, 895, 953
BspPI GGATC 2 cut(s) 50, 637
BspT107I GGYRCC 2 cut(s) 187, 951
BsrFI RCCGGY 3 cut(s) 715, 904, 914
BsrI ACTGG 1 cut(s) 646
BssAI RCCGGY 3 cut(s) 715, 904, 914
BssECI CCNNGG 3 cut(s) 626, 808, 899
BssMI GATC 2 cut(s) 55, 642
BssNI GRCGYC 1 cut(s) 952
BssT1I CCWWGG 1 cut(s) 899
Bst2UI CCWGG 1 cut(s) 910
Bst4CI ACNGT 1 cut(s) 761
BstACI GRCGYC 1 cut(s) 952
BstC8I GCNNGC 3 cut(s) 626, 840, 906
BstDEI CTNAG 3 cut(s) 389, 478, 938
BstDSI CCRYGG 1 cut(s) 626
BstF5I GGATG 2 cut(s) 315, 425
BstFNI CGCG 2 cut(s) 619, 628
BstH2I RGCGCY 1 cut(s) 955
BstHHI GCGC 1 cut(s) 954
BstKTI GATC 2 cut(s) 58, 645
BstMAI GTCTC 2 cut(s) 481, 487
BstMBI GATC 2 cut(s) 55, 642
BstMCI CGRYCG 1 cut(s) 808
BstMWI GCNNNNNNNGC 4 cut(s) 625, 699, 702, 958
BstNI CCWGG 1 cut(s) 910
BstSCI CCNGG 4 cut(s) 686, 807, 889, 908
BstUI CGCG 2 cut(s) 619, 628
BstV1I GCAGC 1 cut(s) 705
BsuRI GGCC 3 cut(s) 605, 904, 908
BtgI CCRYGG 1 cut(s) 626
BtsCI GGATG 2 cut(s) 315, 425
BtsI GCAGTG 2 cut(s) 599, 712
BtsIMutI CAGTG 2 cut(s) 599, 712
Cac8I GCNNGC 3 cut(s) 626, 840, 906
CfoI GCGC 1 cut(s) 954
Cfr10I RCCGGY 3 cut(s) 715, 904, 914
Cfr13I GGNCC 4 cut(s) 604, 769, 887, 912
Cfr42I CCGCGG 1 cut(s) 629
CseI GACGC 1 cut(s) 625
Csp6I GTAC 1 cut(s) 386
CspAI ACCGGT 1 cut(s) 914
CviJI RGCY 9 cut(s) 580, 605, 612, 624, 636, 894, 904, 908, 947
CviKI_1 RGCY 9 cut(s) 580, 605, 612, 624, 636, 894, 904, 908, 947
CviQI GTAC 1 cut(s) 386
DdeI CTNAG 3 cut(s) 389, 478, 938
DinI GGCGCC 1 cut(s) 953
DpnI GATC 2 cut(s) 57, 644
DpnII GATC 2 cut(s) 55, 642
DraI TTTAAA 2 cut(s) 16, 510
DraIII CACNNNGTG 1 cut(s) 594
EciI GGCGGA 3 cut(s) 641, 735, 833
Eco130I CCWWGG 1 cut(s) 899
Eco24I GRGCYC 3 cut(s) 614, 638, 896
Eco47I GGWCC 3 cut(s) 769, 887, 912
Eco57I CTGAAG 2 cut(s) 76, 785
Eco88I CYCGRG 1 cut(s) 974
EcoO109I RGGNCCY 1 cut(s) 769
EcoRII CCWGG 1 cut(s) 908
EcoT14I CCWWGG 1 cut(s) 899
EcoT22I ATGCAT 1 cut(s) 427
EcoT38I GRGCYC 3 cut(s) 614, 638, 896
EgeI GGCGCC 1 cut(s) 953
EheI GGCGCC 1 cut(s) 953
ErhI CCWWGG 1 cut(s) 899
FaqI GGGAC 1 cut(s) 574
FauI CCCGC 3 cut(s) 633, 720, 831
Fnu4HI GCNGC 7 cut(s) 598, 655, 658, 694, 703, 728, 788
FokI GGATG 2 cut(s) 302, 412
FriOI GRGCYC 3 cut(s) 614, 638, 896
FseI GGCCGGCC 1 cut(s) 908
Fsp4HI GCNGC 7 cut(s) 598, 655, 658, 694, 703, 728, 788
FspBI CTAG 1 cut(s) 900
GlaI GCGC 1 cut(s) 953
GluI GCNGC 7 cut(s) 598, 655, 658, 694, 703, 728, 788
HaeII RGCGCY 1 cut(s) 955
HaeIII GGCC 3 cut(s) 605, 904, 908
HapII CCGG 7 cut(s) 688, 716, 734, 808, 890, 905, 915
HgaI GACGC 1 cut(s) 625
HhaI GCGC 1 cut(s) 954
Hin1I GRCGYC 1 cut(s) 952
Hin6I GCGC 1 cut(s) 952
HinP1I GCGC 1 cut(s) 952
HinfI GANTC 2 cut(s) 73, 156
HpaII CCGG 7 cut(s) 688, 716, 734, 808, 890, 905, 915
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 4 cut(s) 128, 148, 723, 765
Hpy188III TCNNGA 3 cut(s) 550, 682, 974
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 2 cut(s) 619, 787
HpyAV CCTTC 3 cut(s) 760, 808, 936
HpyCH4III ACNGT 1 cut(s) 761
HpyCH4V TGCA 2 cut(s) 425, 493
HpyF10VI GCNNNNNNNGC 4 cut(s) 625, 699, 702, 958
HpyF3I CTNAG 3 cut(s) 389, 478, 938
Hsp92I GRCGYC 1 cut(s) 952
HspAI GCGC 1 cut(s) 952
KasI GGCGCC 1 cut(s) 951
KroI GCCGGC 1 cut(s) 904
KroNI GCCGGC 1 cut(s) 906
KspI CCGCGG 1 cut(s) 629
Kzo9I GATC 2 cut(s) 55, 642
LmnI GCTCC 4 cut(s) 585, 684, 690, 899
Lsp1109I GCAGC 1 cut(s) 705
LweI GCATC 4 cut(s) 412, 434, 666, 714
MaeI CTAG 1 cut(s) 900
MaeIII GTNAC 4 cut(s) 707, 923, 933, 964
MalI GATC 2 cut(s) 57, 644
MboI GATC 2 cut(s) 55, 642
MboII GAAGA 2 cut(s) 82, 565
MfeI CAATTG 1 cut(s) 469
MhlI GDGCHC 4 cut(s) 614, 638, 896, 963
Mly113I GGCGCC 1 cut(s) 952
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 865
MnlI CCTC 5 cut(s) 99, 128, 552, 593, 747
Mph1103I ATGCAT 1 cut(s) 427
MroNI GCCGGC 1 cut(s) 904
MseI TTAA 8 cut(s) 15, 39, 44, 84, 270, 341, 396, 509
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 7 cut(s) 688, 716, 734, 808, 890, 905, 915
MspR9I CCNGG 4 cut(s) 688, 809, 891, 910
MunI CAATTG 1 cut(s) 469
MvaI CCWGG 1 cut(s) 910
MvnI CGCG 2 cut(s) 619, 628
MwoI GCNNNNNNNGC 4 cut(s) 625, 699, 702, 958
NaeI GCCGGC 1 cut(s) 906
NarI GGCGCC 1 cut(s) 952
NciI CCSGG 3 cut(s) 688, 809, 891
NdeII GATC 2 cut(s) 55, 642
NgoMIV GCCGGC 1 cut(s) 904
NlaIV GGNNCC 4 cut(s) 189, 720, 895, 953
NmuCI GTSAC 2 cut(s) 707, 964
NsiI ATGCAT 1 cut(s) 427
PdiI GCCGGC 1 cut(s) 906
PfeI GAWTC 1 cut(s) 156
PflMI CCANNNNNTGG 1 cut(s) 556
PinAI ACCGGT 1 cut(s) 914
PkrI GCNGC 7 cut(s) 599, 656, 659, 695, 704, 729, 789
PleI GAGTC 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 955
PpsI GAGTC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 769
PshBI ATTAAT 1 cut(s) 396
PsiI TTATAA 3 cut(s) 23, 32, 356
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 908
PspGI CCWGG 1 cut(s) 908
PspN4I GGNNCC 4 cut(s) 189, 720, 895, 953
PspPI GGNCC 4 cut(s) 604, 769, 887, 912
PspPPI RGGWCCY 1 cut(s) 769
RigI GGCCGGCC 1 cut(s) 908
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SacII CCGCGG 1 cut(s) 629
SaqAI TTAA 8 cut(s) 15, 39, 44, 84, 270, 341, 396, 509
SatI GCNGC 7 cut(s) 598, 655, 658, 694, 703, 728, 788
Sau3AI GATC 2 cut(s) 55, 642
Sau96I GGNCC 4 cut(s) 604, 769, 887, 912
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 4 cut(s) 688, 809, 891, 910
SduI GDGCHC 4 cut(s) 614, 638, 896, 963
SetI ASST 7 cut(s) 110, 167, 544, 582, 671, 774, 868
SfaNI GCATC 4 cut(s) 412, 434, 666, 714
SfoI GGCGCC 1 cut(s) 953
Sfr303I CCGCGG 1 cut(s) 629
SgrBI CCGCGG 1 cut(s) 629
SinI GGWCC 3 cut(s) 769, 887, 912
SmiI ATTTAAAT 1 cut(s) 510
SspDI GGCGCC 1 cut(s) 951
SspI AATATT 3 cut(s) 350, 520, 742
SspMI CTAG 1 cut(s) 900
StyD4I CCNGG 4 cut(s) 686, 807, 889, 908
StyI CCWWGG 1 cut(s) 899
SwaI ATTTAAAT 1 cut(s) 510
TaaI ACNGT 1 cut(s) 761
TatI WGTACW 1 cut(s) 385
TauI GCSGC 6 cut(s) 600, 657, 660, 705, 730, 790
TfiI GAWTC 1 cut(s) 156
Tru1I TTAA 8 cut(s) 15, 39, 44, 84, 270, 341, 396, 509
Tru9I TTAA 8 cut(s) 15, 39, 44, 84, 270, 341, 396, 509
TscAI CASTG 2 cut(s) 599, 712
TseFI GTSAC 2 cut(s) 707, 964
TseI GCWGC 1 cut(s) 693
Tsp45I GTSAC 2 cut(s) 707, 964
TspRI CASTG 2 cut(s) 599, 712
Van91I CCANNNNNTGG 1 cut(s) 556
VpaK11BI GGWCC 3 cut(s) 769, 887, 912
VspI ATTAAT 1 cut(s) 396
XapI RAATTY 9 cut(s) 7, 141, 171, 212, 323, 337, 511, 531, 572
XmaJI CCTAGG 1 cut(s) 899
XspI CTAG 1 cut(s) 900
Zsp2I ATGCAT 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.