AT1G68850

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014472
Physical Location & Seq
Reverse (-)
25883556 .. 25885261
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G68850.1

Sequence Viewer

Length: 1011 bp
ATGATGAGACTCCTCTTTGTATTCTTCATGGTTCACACCATCTTTATCCCATGCTTTTCCTTTGATACACCGGGGAAGGATCTTCCTTTAACCCTAGATTATTACAAGTCTACTTGTCCAACCGTATTTGACGTCATCAAGAAAGAAATGGAATGCATAGTGAAGGAAGATCCTAGAAATGCAGCCATAATTATTCGTCTTCACTTCCACGACTGCTTTGTCCAAGGATGTGATGGATCGGTGTTGCTAGACGAGACAGAAACTCTACAGGGAGAGAAGAAAGCTTCTCCCAACATAAATTCATTGAAAGGATACAAAATTGTCGACAGAATCAAGAACATAATCGAATCCGAATGTCCTGGAGTTGTTTCATGCGCTGATCTTCTCACAATTGGTGCTAGAGATGCTACAATCCTGGTGGGTGGGCCTTACTGGGATGTTCCTGTGGGAAGAAAAGATTCAAAAACCGCAAGCTACGAGCTTGCCACAACAAACCTTCCAACTCCAGAAGAGGGTTTAATCAGCATCATTGCTAAGTTCTATTCTCAAGGTCTCTCGGTTGAAGACATGGTCGCTCTTATAGGAGCGCACACGATCGGAAAAGCACAATGTCGCAACTTCCGATCCCGAATTTATGGAGATTTTCAAGTGACGTCAGCCCTAAATCCAGTTTCGGAGACGTACTTGGCAAGTCTTCGAGAGATTTGTCCGGCGAGTAGCGGAGAAGGTGATAGTAACGTGACGGCGATAGACAATGTGACGCCGAATCTCTTCGATAACTCGATCTACCACACACTGCTAAGAGGAGAAGGGTTACTGAATTCGGACCAGGAGATGTACACGAGCTTGTTCGGGATACAAACGCGGCGAATCGTGAGCAAGTATGCGGAGGATCCAGTGGCTTTCTTCGAGCAATTCTCGAAGTCGATGGTAAAGATGGGGAACATTTTGAACTCTGAAAGCTTGGCTGATGGAGAAGTTAGAAGAAATTGCAGATTTGTGAATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

336

Amino Acids

37.31

Weight (kDa)

5.19

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 298 1.4e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AatII GACGTC 2 cut(s) 135, 656
AccI GTMKAC 2 cut(s) 110, 324
AccII CGCG 1 cut(s) 865
AciI CCGC 4 cut(s) 468, 720, 865, 887
AclWI GGATC 6 cut(s) 87, 164, 244, 618, 887, 900
AcsI RAATTY 3 cut(s) 298, 630, 820
AcyI GRCGYC 3 cut(s) 132, 653, 761
AfaI GTAC 2 cut(s) 683, 839
AfiI CCNNNNNNNGG 1 cut(s) 512
AgsI TTSAA 5 cut(s) 307, 462, 563, 647, 952
AjnI CCWGG 3 cut(s) 358, 414, 828
AluBI AGCT 5 cut(s) 284, 474, 481, 846, 963
AluI AGCT 5 cut(s) 284, 474, 481, 846, 963
Alw26I GTCTC 3 cut(s) 248, 557, 671
AlwI GGATC 6 cut(s) 87, 164, 244, 618, 887, 900
AoxI GGCC 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 3 cut(s) 298, 630, 820
Asp700I GAANNNNTTC 2 cut(s) 457, 770
AspLEI GCGC 2 cut(s) 377, 589
AspS9I GGNCC 2 cut(s) 425, 826
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 740
AvaII GGWCC 1 cut(s) 826
BamHI GGATCC 1 cut(s) 892
BauI CACGAG 1 cut(s) 841
BbsI GAAGAC 3 cut(s) 191, 570, 686
BbvI GCAGC 1 cut(s) 194
BccI CCATC 5 cut(s) 47, 227, 922, 931, 965
BceAI ACGGC 1 cut(s) 759
BciT130I CCWGG 3 cut(s) 360, 416, 830
BciVI GTATCC 2 cut(s) 305, 849
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 3 cut(s) 248, 557, 671
BfaI CTAG 4 cut(s) 95, 174, 248, 399
BfmI CTRYAG 1 cut(s) 266
BfuI GTATCC 2 cut(s) 305, 849
BisI GCNGC 2 cut(s) 183, 866
BlsI GCNGC 2 cut(s) 184, 867
Bme1390I CCNGG 4 cut(s) 72, 360, 416, 830
Bme18I GGWCC 1 cut(s) 826
BmgT120I GGNCC 2 cut(s) 425, 826
BmiI GGNNCC 1 cut(s) 894
BmrFI CCNGG 4 cut(s) 72, 360, 416, 830
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 2 cut(s) 394, 534
BmuI ACTGGG 1 cut(s) 442
BpiI GAAGAC 3 cut(s) 191, 570, 686
BplI GAGNNNNNCTC 2 cut(s) 902, 934
BpmI CTGGAG 2 cut(s) 381, 489
BpuEI CTTGAG 1 cut(s) 531
BpuMI CCSGG 1 cut(s) 72
BsaHI GRCGYC 3 cut(s) 132, 653, 761
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 2 cut(s) 71, 223
Bsc4I CCNNNNNNNGG 1 cut(s) 512
Bse1I ACTGG 3 cut(s) 437, 668, 896
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 3 cut(s) 360, 416, 830
BseDI CCNNGG 2 cut(s) 71, 223
BseGI GGATG 2 cut(s) 233, 442
BseLI CCNNNNNNNGG 1 cut(s) 512
BseMI GCAATG 1 cut(s) 528
BseNI ACTGG 3 cut(s) 437, 668, 896
BseRI GAGGAG 1 cut(s) 819
BseXI GCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 865
Bsh1285I CGRYCG 1 cut(s) 597
BshFI GGCC 1 cut(s) 427
BsiEI CGRYCG 1 cut(s) 597
BsiSI CCGG 2 cut(s) 71, 710
BslI CCNNNNNNNGG 1 cut(s) 512
BsmAI GTCTC 3 cut(s) 248, 557, 671
BsmBI CGTCTC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 158
BsnI GGCC 1 cut(s) 427
Bso31I GGTCTC 1 cut(s) 557
Bsp1407I TGTACA 1 cut(s) 837
Bsp143I GATC 8 cut(s) 79, 169, 236, 379, 594, 623, 783, 892
BspACI CCGC 4 cut(s) 468, 720, 865, 887
BspANI GGCC 1 cut(s) 427
BspFNI CGCG 1 cut(s) 865
BspLI GGNNCC 1 cut(s) 894
BspPI GGATC 6 cut(s) 87, 164, 244, 618, 887, 900
BspTNI GGTCTC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 528
BsrGI TGTACA 1 cut(s) 837
BsrI ACTGG 3 cut(s) 437, 668, 896
BssECI CCNNGG 2 cut(s) 71, 223
BssMI GATC 8 cut(s) 79, 169, 236, 379, 594, 623, 783, 892
BssNI GRCGYC 3 cut(s) 132, 653, 761
BssSI CACGAG 1 cut(s) 841
BssT1I CCWWGG 1 cut(s) 223
Bst2BI CACGAG 1 cut(s) 841
Bst2UI CCWGG 3 cut(s) 360, 416, 830
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 504, 776
BstACI GRCGYC 3 cut(s) 132, 653, 761
BstAUI TGTACA 1 cut(s) 837
BstC8I GCNNGC 2 cut(s) 472, 483
BstDEI CTNAG 2 cut(s) 534, 800
BstF5I GGATG 2 cut(s) 233, 442
BstFNI CGCG 1 cut(s) 865
BstHHI GCGC 2 cut(s) 377, 589
BstKTI GATC 8 cut(s) 82, 172, 239, 382, 597, 626, 786, 895
BstMAI GTCTC 3 cut(s) 248, 557, 671
BstMBI GATC 8 cut(s) 79, 169, 236, 379, 594, 623, 783, 892
BstMCI CGRYCG 1 cut(s) 597
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 3 cut(s) 360, 416, 830
BstSCI CCNGG 4 cut(s) 70, 358, 414, 828
BstSFI CTRYAG 1 cut(s) 266
BstUI CGCG 1 cut(s) 865
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 3 cut(s) 191, 570, 686
BstX2I RGATCY 3 cut(s) 79, 169, 892
BstYI RGATCY 3 cut(s) 79, 169, 892
BsuI GTATCC 2 cut(s) 305, 849
BsuRI GGCC 1 cut(s) 427
BtsCI GGATG 2 cut(s) 233, 442
BtsI GCAGTG 1 cut(s) 794
BtsIMutI CAGTG 2 cut(s) 794, 903
Cac8I GCNNGC 2 cut(s) 472, 483
CfoI GCGC 2 cut(s) 377, 589
Cfr13I GGNCC 2 cut(s) 425, 826
CseI GACGC 1 cut(s) 769
Csp6I GTAC 2 cut(s) 682, 838
CspCI CAANNNNNGTGG 2 cut(s) 399, 434
CviAII CATG 5 cut(s) 28, 51, 372, 568, 1008
CviQI GTAC 2 cut(s) 682, 838
DdeI CTNAG 2 cut(s) 534, 800
DpnI GATC 8 cut(s) 81, 171, 238, 381, 596, 625, 785, 894
DpnII GATC 8 cut(s) 79, 169, 236, 379, 594, 623, 783, 892
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
Eam1104I CTCTTC 2 cut(s) 504, 776
EarI CTCTTC 2 cut(s) 504, 776
Eco130I CCWWGG 1 cut(s) 223
Eco31I GGTCTC 1 cut(s) 557
Eco47I GGWCC 1 cut(s) 826
EcoRI GAATTC 1 cut(s) 820
EcoRII CCWGG 3 cut(s) 358, 414, 828
EcoT14I CCWWGG 1 cut(s) 223
EcoT22I ATGCAT 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 5 cut(s) 31, 54, 375, 571, 1011
FatI CATG 5 cut(s) 27, 50, 371, 567, 1007
FblI GTMKAC 2 cut(s) 110, 324
Fnu4HI GCNGC 2 cut(s) 183, 866
FokI GGATG 2 cut(s) 240, 449
Fsp4HI GCNGC 2 cut(s) 183, 866
FspBI CTAG 4 cut(s) 95, 174, 248, 399
GlaI GCGC 2 cut(s) 376, 588
GluI GCNGC 2 cut(s) 183, 866
GsuI CTGGAG 2 cut(s) 381, 489
HaeIII GGCC 1 cut(s) 427
HapII CCGG 2 cut(s) 71, 710
HgaI GACGC 1 cut(s) 769
HhaI GCGC 2 cut(s) 377, 589
Hin1I GRCGYC 3 cut(s) 132, 653, 761
Hin1II CATG 5 cut(s) 31, 54, 375, 571, 1011
Hin6I GCGC 2 cut(s) 375, 587
HinP1I GCGC 2 cut(s) 375, 587
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 2 cut(s) 282, 961
HinfI GANTC 6 cut(s) 9, 330, 347, 458, 766, 870
HpaII CCGG 2 cut(s) 71, 710
HphI GGTGA 1 cut(s) 740
Hpy166II GTNNAC 4 cut(s) 34, 111, 325, 840
Hpy188I TCNGA 6 cut(s) 352, 599, 623, 676, 826, 958
Hpy188III TCNNGA 8 cut(s) 139, 334, 506, 627, 698, 853, 874, 919
Hpy8I GTNNAC 4 cut(s) 34, 111, 325, 840
HpyAV CCTTC 5 cut(s) 70, 157, 506, 719, 803
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4IV ACGT 4 cut(s) 132, 653, 680, 738
HpyCH4V TGCA 3 cut(s) 156, 182, 993
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 2 cut(s) 534, 800
HpySE526I ACGT 4 cut(s) 132, 653, 680, 738
Hsp92I GRCGYC 3 cut(s) 132, 653, 761
Hsp92II CATG 5 cut(s) 31, 54, 375, 571, 1011
HspAI GCGC 2 cut(s) 375, 587
Kzo9I GATC 8 cut(s) 79, 169, 236, 379, 594, 623, 783, 892
LmnI GCTCC 1 cut(s) 584
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 394, 534
MaeI CTAG 4 cut(s) 95, 174, 248, 399
MaeII ACGT 4 cut(s) 132, 653, 680, 738
MaeIII GTNAC 5 cut(s) 649, 734, 739, 757, 813
MalI GATC 8 cut(s) 81, 171, 238, 381, 596, 625, 785, 894
MboI GATC 8 cut(s) 79, 169, 236, 379, 594, 623, 783, 892
MfeI CAATTG 1 cut(s) 390
MflI RGATCY 3 cut(s) 79, 169, 892
MluCI AATT 8 cut(s) 189, 298, 318, 390, 630, 820, 914, 988
MlyI GAGTC 1 cut(s) 3
MmeI TCCRAC 2 cut(s) 143, 524
MnlI CCTC 4 cut(s) 23, 505, 797, 883
Mph1103I ATGCAT 1 cut(s) 158
MroXI GAANNNNTTC 2 cut(s) 457, 770
MseI TTAA 2 cut(s) 89, 518
MspI CCGG 2 cut(s) 71, 710
MspR9I CCNGG 4 cut(s) 72, 360, 416, 830
MunI CAATTG 1 cut(s) 390
Mva1269I GAATGC 1 cut(s) 158
MvaI CCWGG 3 cut(s) 360, 416, 830
MvnI CGCG 1 cut(s) 865
MwoI GCNNNNNNNGC 1 cut(s) 404
NciI CCSGG 1 cut(s) 72
NdeII GATC 8 cut(s) 79, 169, 236, 379, 594, 623, 783, 892
NlaIII CATG 5 cut(s) 31, 54, 375, 571, 1011
NlaIV GGNNCC 1 cut(s) 894
NmuCI GTSAC 3 cut(s) 649, 739, 757
NsiI ATGCAT 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 619
PctI GAATGC 1 cut(s) 158
PdmI GAANNNNTTC 2 cut(s) 457, 770
PfeI GAWTC 5 cut(s) 330, 347, 458, 766, 870
PflFI GACNNNGTC 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 358
PkrI GCNGC 2 cut(s) 184, 867
Ple19I CGATCG 1 cut(s) 597
PleI GAGTC 1 cut(s) 3
PpsI GAGTC 1 cut(s) 3
Psp6I CCWGG 3 cut(s) 358, 414, 828
PspGI CCWGG 3 cut(s) 358, 414, 828
PspN4I GGNNCC 1 cut(s) 894
PspPI GGNCC 2 cut(s) 425, 826
PsuI RGATCY 3 cut(s) 79, 169, 892
PsyI GACNNNGTC 1 cut(s) 569
PvuI CGATCG 1 cut(s) 597
RsaI GTAC 2 cut(s) 683, 839
RsaNI GTAC 2 cut(s) 682, 838
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 89, 518
SatI GCNGC 2 cut(s) 183, 866
Sau3AI GATC 8 cut(s) 79, 169, 236, 379, 594, 623, 783, 892
Sau96I GGNCC 2 cut(s) 425, 826
SchI GAGTC 1 cut(s) 3
ScrFI CCNGG 4 cut(s) 72, 360, 416, 830
SfaNI GCATC 2 cut(s) 394, 534
SfcI CTRYAG 1 cut(s) 266
SinI GGWCC 1 cut(s) 826
SmlI CTYRAG 1 cut(s) 546
SmoI CTYRAG 1 cut(s) 546
Sse9I AATT 8 cut(s) 189, 298, 318, 390, 630, 820, 914, 988
SsiI CCGC 4 cut(s) 468, 720, 865, 887
SspMI CTAG 4 cut(s) 95, 174, 248, 399
StyD4I CCNGG 4 cut(s) 70, 358, 414, 828
StyI CCWWGG 1 cut(s) 223
TaaI ACNGT 1 cut(s) 124
TaiI ACGT 4 cut(s) 135, 656, 683, 741
TaqI TCGA 8 cut(s) 324, 345, 697, 774, 782, 909, 920, 926
TasI AATT 8 cut(s) 189, 298, 318, 390, 630, 820, 914, 988
TatI WGTACW 1 cut(s) 837
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 5 cut(s) 330, 347, 458, 766, 870
Tru1I TTAA 2 cut(s) 89, 518
Tru9I TTAA 2 cut(s) 89, 518
TscAI CASTG 2 cut(s) 801, 903
TseFI GTSAC 3 cut(s) 649, 739, 757
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 3 cut(s) 649, 739, 757
TspDTI ATGAA 3 cut(s) 16, 291, 360
TspRI CASTG 2 cut(s) 801, 903
Tth111I GACNNNGTC 1 cut(s) 569
VpaK11BI GGWCC 1 cut(s) 826
XapI RAATTY 3 cut(s) 298, 630, 820
XcmI CCANNNNNNNNNTGG 1 cut(s) 230
XmiI GTMKAC 2 cut(s) 110, 324
XmnI GAANNNNTTC 2 cut(s) 457, 770
XspI CTAG 4 cut(s) 95, 174, 248, 399
ZraI GACGTC 2 cut(s) 133, 654
Zsp2I ATGCAT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.