MD16G1052000.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0014472
Physical Location & Seq
Reverse (-)
3719783 .. 3721576
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1052000.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGCTCCTTTTTCCCTTTGCTTTCAGCCCTTCGTTATGCAACTCTTGCTACTAGTTTTCGTCGTTTTGAGTACCGGCTTGTGCGCAGGTGACCCTCCGTTAACGTTGGACTACTACGAATCTGCATGTCCGACTGTGTTTGAGATTGTGAAGAAAGAAATGGAATGCGCTGTGCTCTCTGATCCTCGTAATGCCGCCTTGGTGGTTCGGTTGCATTTCCACGACTGTTTTGTTCAGGGGTGTGATGGATCGGTTTTGCTTGAGGACACAATCACGCTGACAGGTGAGAAGAAAGCTTCCCCCAACATACACTCTTTAAAAGGTTTCAGAATTGTTGACAGAATCAAGAACAAGCTCGAATCCGAATGCCCTGGAATCGTTTCATGCGCTGATCTTCTTACTATTGCTGCAAGAGATGCTGTCATTCTGGTTAGTGGACCTTATTGGGATGTTCCTCTAGGAAGAAAAGATTCTATAACTGCTAGCCCTGACCTCGCAGAGGCTAACCTTCCCACTGCAAATGAAGGTCTTTCGACAATCATCTCCAAATTTCTTTACCAAGGCTTATCAGTCACAGATATGGTGGCTCTTTCAGGGGCTCACACAATCGGCATGGCGCGGTGTGAGAACGTAAGAGAAGGGATTTATAGCGGCGAATTCGAAGCAACTTCAGGAATCAATCCGCTGTCGGAGTCGCACCTCAACAACCTGAGATCGACGTGCCCGCCAGTTGGTGGAGTTGGGAACAATAACGTAACCGCCATGGATTACGTGACTCCCGAACTCTTTGATAATTCTTTCTATCGTCTGCTGCTGAAAGGGGAGGGACTGCTGAACTCGGATCAGGAAATGTACTCTAGTTTGTTTGGGATCGAAACGGGGGAGATTGTGAGGAAGTACGCAGCTGATCCAGTTGCTTTCTTCGAGCAGTTTTCGGAGTCGATGGTGAAGTTGGGAAATATTACCAATGATGAAAGCTTTGAGAATGGAGAAGTTAGAAAAAATTGCAGGTTTGTCAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

342

Amino Acids

37.2

Weight (kDa)

4.71

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 50 - 303 2e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 77
Acc16I TGCGCA 1 cut(s) 85
Acc36I ACCTGC 2 cut(s) 77, 999
AccB7I CCANNNNNTGG 1 cut(s) 734
AccII CGCG 1 cut(s) 619
AciI CCGC 6 cut(s) 195, 619, 651, 683, 725, 759
AclI AACGTT 1 cut(s) 104
AclWI GGATC 5 cut(s) 176, 256, 849, 878, 902
AcsI RAATTY 2 cut(s) 548, 656
AcuI CTGAAG 1 cut(s) 654
AfaI GTAC 3 cut(s) 73, 854, 899
AfiI CCNNNNNNNGG 3 cut(s) 499, 731, 734
AhlI ACTAGT 1 cut(s) 52
AjiI CACGTC 1 cut(s) 720
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 4 cut(s) 296, 355, 905, 978
AluI AGCT 4 cut(s) 296, 355, 905, 978
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 5 cut(s) 176, 256, 849, 878, 902
ApeKI GCWGC 3 cut(s) 407, 811, 902
ApoI RAATTY 2 cut(s) 548, 656
Asp700I GAANNNNTTC 2 cut(s) 379, 469
AspLEI GCGC 4 cut(s) 86, 170, 389, 619
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 101, 296, 958
AsuII TTCGAA 1 cut(s) 660
AsuNHI GCTAGC 1 cut(s) 482
AvaII GGWCC 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 601
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 394, 798, 914
BccI CCATC 2 cut(s) 239, 937
BciT130I CCWGG 1 cut(s) 372
BcuI ACTAGT 1 cut(s) 52
BfaI CTAG 4 cut(s) 53, 458, 483, 858
BfuAI ACCTGC 2 cut(s) 77, 999
BisI GCNGC 5 cut(s) 195, 408, 652, 812, 903
BlsI GCNGC 5 cut(s) 196, 409, 653, 813, 904
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 437
BmgBI CACGTC 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 406
BmtI GCTAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 660
BpuEI CTTGAG 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 772
BsaJI CCNNGG 4 cut(s) 198, 370, 559, 762
Bsc4I CCNNNNNNNGG 3 cut(s) 499, 731, 734
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 728, 911
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 4 cut(s) 198, 370, 559, 762
BseGI GGATG 1 cut(s) 454
BseLI CCNNNNNNNGG 3 cut(s) 499, 731, 734
BseMII CTCAG 1 cut(s) 701
BseNI ACTGG 2 cut(s) 728, 911
BseSI GKGCMC 1 cut(s) 725
BseXI GCAGC 3 cut(s) 394, 798, 914
Bsh1236I CGCG 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 840
BslI CCNNNNNNNGG 3 cut(s) 499, 731, 734
BsmFI GGGAC 1 cut(s) 840
BsmI GAATGC 2 cut(s) 170, 371
Bsp119I TTCGAA 1 cut(s) 660
Bsp1286I GDGCHC 3 cut(s) 177, 601, 725
Bsp143I GATC 7 cut(s) 181, 248, 391, 713, 841, 870, 907
Bsp19I CCATGG 1 cut(s) 762
BspACI CCGC 6 cut(s) 195, 619, 651, 683, 725, 759
BspCNI CTCAG 1 cut(s) 702
BspFNI CGCG 1 cut(s) 619
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 2 cut(s) 77, 999
BspOI GCTAGC 1 cut(s) 486
BspPI GGATC 5 cut(s) 176, 256, 849, 878, 902
BspT104I TTCGAA 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 728, 911
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 4 cut(s) 198, 370, 559, 762
BssMI GATC 7 cut(s) 181, 248, 391, 713, 841, 870, 907
BssT1I CCWWGG 3 cut(s) 198, 559, 762
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 136, 227
BstAPI GCANNNNNTGC 2 cut(s) 46, 416
BstBAI YACGTR 1 cut(s) 772
BstBI TTCGAA 1 cut(s) 660
BstC8I GCNNGC 2 cut(s) 484, 725
BstDEI CTNAG 1 cut(s) 710
BstDSI CCRYGG 1 cut(s) 762
BstEII GGTNACC 1 cut(s) 89
BstENI CCTNNNNNAGG 1 cut(s) 497
BstF5I GGATG 1 cut(s) 454
BstFNI CGCG 1 cut(s) 619
BstHHI GCGC 4 cut(s) 86, 170, 389, 619
BstKTI GATC 7 cut(s) 184, 251, 394, 716, 844, 873, 910
BstMBI GATC 7 cut(s) 181, 248, 391, 713, 841, 870, 907
BstMWI GCNNNNNNNGC 2 cut(s) 46, 416
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 129
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 370
BstSLI GKGCMC 1 cut(s) 725
BstUI CGCG 1 cut(s) 619
BstV1I GCAGC 3 cut(s) 394, 798, 914
BtgI CCRYGG 1 cut(s) 762
BtrI CACGTC 1 cut(s) 720
BtsCI GGATG 1 cut(s) 454
BtsI GCAGTG 1 cut(s) 513
BtsIMutI CAGTG 1 cut(s) 513
BveI ACCTGC 2 cut(s) 77, 999
Cac8I GCNNGC 2 cut(s) 484, 725
CfoI GCGC 4 cut(s) 86, 170, 389, 619
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 3 cut(s) 72, 853, 898
CviAII CATG 4 cut(s) 126, 384, 613, 763
CviQI GTAC 3 cut(s) 72, 853, 898
DdeI CTNAG 1 cut(s) 710
DpnI GATC 7 cut(s) 183, 250, 393, 715, 843, 872, 909
DpnII GATC 7 cut(s) 181, 248, 391, 713, 841, 870, 907
DraI TTTAAA 1 cut(s) 318
Eco130I CCWWGG 3 cut(s) 198, 559, 762
Eco24I GRGCYC 1 cut(s) 601
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 654
Eco91I GGTNACC 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoO65I GGTNACC 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 656
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 3 cut(s) 198, 559, 762
EcoT38I GRGCYC 1 cut(s) 601
ErhI CCWWGG 3 cut(s) 198, 559, 762
FaeI CATG 4 cut(s) 129, 387, 616, 766
FaiI YATR 9 cut(s) 38, 127, 308, 385, 476, 581, 614, 648, 764
FaqI GGGAC 1 cut(s) 840
FatI CATG 4 cut(s) 125, 383, 612, 762
FauI CCCGC 1 cut(s) 732
Fnu4HI GCNGC 5 cut(s) 195, 408, 652, 812, 903
FokI GGATG 1 cut(s) 461
FriOI GRGCYC 1 cut(s) 601
Fsp4HI GCNGC 5 cut(s) 195, 408, 652, 812, 903
FspBI CTAG 4 cut(s) 53, 458, 483, 858
FspI TGCGCA 1 cut(s) 85
GlaI GCGC 4 cut(s) 85, 169, 388, 618
GluI GCNGC 5 cut(s) 195, 408, 652, 812, 903
HapII CCGG 1 cut(s) 75
HhaI GCGC 4 cut(s) 86, 170, 389, 619
Hin1II CATG 4 cut(s) 129, 387, 616, 766
Hin6I GCGC 4 cut(s) 84, 168, 387, 617
HinP1I GCGC 4 cut(s) 84, 168, 387, 617
HincII GTYRAC 3 cut(s) 102, 337, 1018
HindII GTYRAC 3 cut(s) 102, 337, 1018
HindIII AAGCTT 2 cut(s) 294, 976
HinfI GANTC 9 cut(s) 119, 342, 359, 375, 470, 675, 692, 775, 938
HpaI GTTAAC 1 cut(s) 102
HpaII CCGG 1 cut(s) 75
HphI GGTGA 3 cut(s) 101, 296, 958
Hpy166II GTNNAC 4 cut(s) 102, 337, 437, 1018
Hpy188I TCNGA 7 cut(s) 132, 181, 329, 364, 691, 841, 937
Hpy188III TCNNGA 4 cut(s) 346, 672, 779, 845
Hpy8I GTNNAC 4 cut(s) 102, 337, 437, 1018
Hpy99I CGWCG 2 cut(s) 65, 721
HpyAV CCTTC 4 cut(s) 40, 518, 518, 632
HpyCH4III ACNGT 2 cut(s) 136, 227
HpyCH4IV ACGT 5 cut(s) 104, 630, 719, 753, 771
HpyCH4V TGCA 6 cut(s) 40, 125, 214, 410, 518, 1008
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 416
HpyF3I CTNAG 1 cut(s) 710
HpySE526I ACGT 5 cut(s) 104, 630, 719, 753, 771
Hsp92II CATG 4 cut(s) 129, 387, 616, 766
HspAI GCGC 4 cut(s) 84, 168, 387, 617
KspAI GTTAAC 1 cut(s) 102
Kzo9I GATC 7 cut(s) 181, 248, 391, 713, 841, 870, 907
LmnI GCTCC 1 cut(s) 10
Lsp1109I GCAGC 3 cut(s) 394, 798, 914
LweI GCATC 1 cut(s) 406
MaeI CTAG 4 cut(s) 53, 458, 483, 858
MaeII ACGT 5 cut(s) 104, 630, 719, 753, 771
MaeIII GTNAC 4 cut(s) 89, 571, 754, 772
MalI GATC 7 cut(s) 183, 250, 393, 715, 843, 872, 909
MboI GATC 7 cut(s) 181, 248, 391, 713, 841, 870, 907
MboII GAAGA 5 cut(s) 163, 301, 386, 474, 913
MhlI GDGCHC 3 cut(s) 177, 601, 725
MluCI AATT 5 cut(s) 330, 548, 656, 793, 1003
MlyI GAGTC 3 cut(s) 701, 769, 947
MmeI TCCRAC 3 cut(s) 87, 155, 669
MnlI CCTC 9 cut(s) 105, 195, 256, 465, 493, 503, 710, 817, 885
MroXI GAANNNNTTC 2 cut(s) 379, 469
MseI TTAA 2 cut(s) 101, 317
MslI CAYNNNNRTG 1 cut(s) 578
MspA1I CMGCKG 2 cut(s) 685, 905
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 372
Mva1269I GAATGC 2 cut(s) 170, 371
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 619
MwoI GCNNNNNNNGC 2 cut(s) 46, 416
NcoI CCATGG 1 cut(s) 762
NdeII GATC 7 cut(s) 181, 248, 391, 713, 841, 870, 907
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 4 cut(s) 129, 387, 616, 766
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 3 cut(s) 89, 571, 772
NsbI TGCGCA 1 cut(s) 85
NspI RCATGY 1 cut(s) 129
NspV TTCGAA 1 cut(s) 660
PaqCI CACCTGC 1 cut(s) 77
PcsI WCGNNNNNNNCGW 1 cut(s) 777
PctI GAATGC 2 cut(s) 170, 371
PdmI GAANNNNTTC 2 cut(s) 379, 469
PfeI GAWTC 6 cut(s) 119, 342, 359, 375, 470, 675
PflMI CCANNNNNTGG 1 cut(s) 734
PkrI GCNGC 5 cut(s) 196, 409, 653, 813, 904
PleI GAGTC 3 cut(s) 700, 769, 946
PpsI GAGTC 3 cut(s) 700, 769, 946
Ppu21I YACGTR 1 cut(s) 772
Psp1406I AACGTT 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 370
PspEI GGTNACC 1 cut(s) 89
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 905
RsaI GTAC 3 cut(s) 73, 854, 899
RsaNI GTAC 3 cut(s) 72, 853, 898
RseI CAYNNNNRTG 1 cut(s) 578
SaqAI TTAA 2 cut(s) 101, 317
SatI GCNGC 5 cut(s) 195, 408, 652, 812, 903
Sau3AI GATC 7 cut(s) 181, 248, 391, 713, 841, 870, 907
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 3 cut(s) 701, 769, 947
ScrFI CCNGG 1 cut(s) 372
SduI GDGCHC 3 cut(s) 177, 601, 725
SfaNI GCATC 1 cut(s) 406
SfuI TTCGAA 1 cut(s) 660
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 578
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
SpeI ACTAGT 1 cut(s) 52
Sse9I AATT 5 cut(s) 330, 548, 656, 793, 1003
SsiI CCGC 6 cut(s) 195, 619, 651, 683, 725, 759
SspI AATATT 1 cut(s) 961
SspMI CTAG 4 cut(s) 53, 458, 483, 858
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 3 cut(s) 198, 559, 762
TaaI ACNGT 2 cut(s) 136, 227
TaiI ACGT 5 cut(s) 107, 633, 722, 756, 774
TaqI TCGA 7 cut(s) 357, 533, 660, 716, 873, 924, 941
TasI AATT 5 cut(s) 330, 548, 656, 793, 1003
TatI WGTACW 1 cut(s) 852
TauI GCSGC 2 cut(s) 197, 654
TfiI GAWTC 6 cut(s) 119, 342, 359, 375, 470, 675
Tru1I TTAA 2 cut(s) 101, 317
Tru9I TTAA 2 cut(s) 101, 317
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 3 cut(s) 89, 571, 772
TseI GCWGC 3 cut(s) 407, 811, 902
Tsp45I GTSAC 3 cut(s) 89, 571, 772
TspDTI ATGAA 3 cut(s) 372, 537, 987
TspGWI ACGGA 1 cut(s) 87
TspRI CASTG 1 cut(s) 520
Van91I CCANNNNNTGG 1 cut(s) 734
VpaK11BI GGWCC 1 cut(s) 437
XagI CCTNNNNNAGG 1 cut(s) 497
XapI RAATTY 2 cut(s) 548, 656
XceI RCATGY 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 379, 469
XspI CTAG 4 cut(s) 53, 458, 483, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.