pycom16g04570

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0014472
Physical Location & Seq
Reverse (-)
2914030 .. 2915771
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g04570.3

Sequence Viewer

Length: 1137 bp
ATGCAATGCAAACATTTTCTTGCATTTTTCACTTATATATGTATCTCTCAGTCCCAACCATCTCTCCGACTCTCTTCAATCCTCCAAGAAAGCCCTCGATCGCGACCGAAAATGGCTCCTTTTTCCCTTTGCTTTCGGCCCTTCGTTATGCAACTCTTGCTGCTAGGTTTCGCCGTTTTGAGCACCGGCTTGCGCACAGGTGACCCTCCGTTAACGTTGGACTACTACGTATCTGCATGTCCGACTGTGTTTGAGATTGTGAAGAAAGAAATGGAATGTTTAGTGCTCTCTGATCCTCGTAACGCCGCCTTGGTGGTTCGATTGCATTTCCACGACTGTTTTGTTCAGGGATGTGATGGATCGGTTCTGCTAGAGGACACGATCACGCTGACAGGTGAGAAGAAAGCTTCCCCCAACATACACTCTTTAAAAGGTTTCAGAATTGTTGATAGAATCAAGAACAAGCTCGAATCCGAGTGCCCGGGAATCGTTTCATGCGCTGATCTTCTCACTATTGCTGCAAGAGAAGCTGTCATTCTGGTGGGTGGACCTTATTGGGATGTTCCTTTAGGAAGAAAAGATTCTGTAACTGCTAGCCCTGAACTTGCAGAGGCTAACCTTCCTACTGCAAATGAAGGCCTTTCGACAATCATCTCCAAATTTTTTTACCAAGGCTTATCAGTCACAGATATGGTGGCTCTTTCAGGGGCTCACACAATCGGCATGGCGCGGTGTGAGAACGTAAGAGAAAGGATTTATAGCGGGGACTTCGAAGCAACTTCAGGAATCAATCCGCTGTCGGAGTCGTACCTCAACAACCTGAGATCGACGTGCCCGCCAGTCGGTGGAGTTGGGGATAATAACGTAACCGCCATGGATTACGTGACTCCCGAACTCTTTGATAATTCTTTCTATCATCTGCTACTGAAAGGGGAGGGATTGCTGAACTCGGATCAGGAAATGTACTCTAGTTTGTTTGGGATCGAAACGGGGGAGATTGTGAGGAAGTATGCAGCTGATCCAGTTGCTTTCTTCGAGCAGTTTTCGGAGTCGATGGTGAAGTTGGGAAATATTACCAATGATGAAAGCTTTGAGAATGGAGAAGTTAGAAAAAATTGCAGGTTTGTCAACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

379

Amino Acids

41.67

Weight (kDa)

5.14

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 1110
AccB7I CCANNNNNTGG 1 cut(s) 845
AccII CGCG 2 cut(s) 103, 730
AciI CCGC 6 cut(s) 306, 730, 762, 794, 836, 870
AclI AACGTT 1 cut(s) 215
AclWI GGATC 5 cut(s) 287, 367, 960, 989, 1013
AcsI RAATTY 1 cut(s) 659
AcuI CTGAAG 1 cut(s) 765
AfaI GTAC 2 cut(s) 809, 965
AfiI CCNNNNNNNGG 2 cut(s) 842, 845
AgsI TTSAA 1 cut(s) 78
AjiI CACGTC 1 cut(s) 831
AluBI AGCT 5 cut(s) 407, 466, 530, 1016, 1089
AluI AGCT 5 cut(s) 407, 466, 530, 1016, 1089
Alw21I GWGCWC 2 cut(s) 185, 288
AlwI GGATC 5 cut(s) 287, 367, 960, 989, 1013
Ama87I CYCGRG 1 cut(s) 481
AoxI GGCC 2 cut(s) 137, 637
ApeKI GCWGC 3 cut(s) 160, 518, 1013
ApoI RAATTY 1 cut(s) 659
Asp700I GAANNNNTTC 2 cut(s) 490, 580
AspLEI GCGC 3 cut(s) 195, 500, 730
AspS9I GGNCC 2 cut(s) 138, 548
AsuC2I CCSGG 2 cut(s) 482, 483
AsuHPI GGTGA 3 cut(s) 212, 407, 1069
AsuII TTCGAA 1 cut(s) 771
AsuNHI GCTAGC 1 cut(s) 593
AvaI CYCGRG 1 cut(s) 481
AvaII GGWCC 1 cut(s) 548
BaeGI GKGCMC 2 cut(s) 482, 836
BanII GRGCYC 1 cut(s) 712
Bbv12I GWGCWC 2 cut(s) 185, 288
BbvI GCAGC 3 cut(s) 147, 505, 1025
BccI CCATC 3 cut(s) 67, 350, 1048
BceAI ACGGC 1 cut(s) 158
BcnI CCSGG 2 cut(s) 482, 483
BfaI CTAG 4 cut(s) 164, 371, 594, 969
BfuAI ACCTGC 1 cut(s) 1110
BisI GCNGC 4 cut(s) 161, 306, 519, 1014
BlsI GCNGC 4 cut(s) 162, 307, 520, 1015
Bme1390I CCNGG 2 cut(s) 482, 483
Bme18I GGWCC 1 cut(s) 548
BmeT110I CYCGRG 1 cut(s) 481
BmgBI CACGTC 1 cut(s) 831
BmgT120I GGNCC 2 cut(s) 138, 548
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 482, 483
BmtI GCTAGC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 771
BpuMI CCSGG 2 cut(s) 482, 483
BsaAI YACGTR 2 cut(s) 229, 883
BsaJI CCNNGG 4 cut(s) 309, 481, 670, 873
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 2 cut(s) 842, 845
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 2 cut(s) 839, 1022
Bse3DI GCAATG 1 cut(s) 11
BseDI CCNNGG 4 cut(s) 309, 481, 670, 873
BseGI GGATG 2 cut(s) 356, 565
BseLI CCNNNNNNNGG 2 cut(s) 842, 845
BseMI GCAATG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 62, 812
BseNI ACTGG 2 cut(s) 839, 1022
BseSI GKGCMC 2 cut(s) 482, 836
BseXI GCAGC 3 cut(s) 147, 505, 1025
Bsh1236I CGCG 2 cut(s) 103, 730
Bsh1285I CGRYCG 2 cut(s) 101, 107
BshFI GGCC 2 cut(s) 139, 639
BsiEI CGRYCG 2 cut(s) 101, 107
BsiHKAI GWGCWC 2 cut(s) 185, 288
BsiHKCI CYCGRG 1 cut(s) 481
BsiSI CCGG 2 cut(s) 186, 482
BslFI GGGAC 2 cut(s) 37, 779
BslI CCNNNNNNNGG 2 cut(s) 842, 845
BsmFI GGGAC 2 cut(s) 37, 779
BsnI GGCC 2 cut(s) 139, 639
BsoBI CYCGRG 1 cut(s) 481
Bsp119I TTCGAA 1 cut(s) 771
Bsp1286I GDGCHC 5 cut(s) 185, 288, 482, 712, 836
Bsp143I GATC 9 cut(s) 98, 292, 359, 381, 502, 824, 952, 981, 1018
Bsp19I CCATGG 1 cut(s) 873
Bsp68I TCGCGA 1 cut(s) 103
BspACI CCGC 6 cut(s) 306, 730, 762, 794, 836, 870
BspANI GGCC 2 cut(s) 139, 639
BspCNI CTCAG 2 cut(s) 61, 813
BspFNI CGCG 2 cut(s) 103, 730
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 1110
BspOI GCTAGC 1 cut(s) 597
BspPI GGATC 5 cut(s) 287, 367, 960, 989, 1013
BspT104I TTCGAA 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 11
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 2 cut(s) 839, 1022
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 4 cut(s) 309, 481, 670, 873
BssMI GATC 9 cut(s) 98, 292, 359, 381, 502, 824, 952, 981, 1018
BssT1I CCWWGG 3 cut(s) 309, 670, 873
Bst4CI ACNGT 2 cut(s) 247, 338
Bst6I CTCTTC 1 cut(s) 79
BstAPI GCANNNNNTGC 1 cut(s) 157
BstBAI YACGTR 2 cut(s) 229, 883
BstBI TTCGAA 1 cut(s) 771
BstC8I GCNNGC 3 cut(s) 191, 595, 836
BstDEI CTNAG 2 cut(s) 48, 821
BstDSI CCRYGG 1 cut(s) 873
BstEII GGTNACC 1 cut(s) 200
BstF5I GGATG 2 cut(s) 356, 565
BstFNI CGCG 2 cut(s) 103, 730
BstHHI GCGC 3 cut(s) 195, 500, 730
BstKTI GATC 9 cut(s) 101, 295, 362, 384, 505, 827, 955, 984, 1021
BstMBI GATC 9 cut(s) 98, 292, 359, 381, 502, 824, 952, 981, 1018
BstMCI CGRYCG 2 cut(s) 101, 107
BstMWI GCNNNNNNNGC 2 cut(s) 157, 527
BstNSI RCATGY 1 cut(s) 240
BstPI GGTNACC 1 cut(s) 200
BstSCI CCNGG 2 cut(s) 480, 481
BstSLI GKGCMC 2 cut(s) 482, 836
BstSNI TACGTA 1 cut(s) 229
BstUI CGCG 2 cut(s) 103, 730
BstV1I GCAGC 3 cut(s) 147, 505, 1025
BsuRI GGCC 2 cut(s) 139, 639
BtgI CCRYGG 1 cut(s) 873
BtrI CACGTC 1 cut(s) 831
BtsCI GGATG 2 cut(s) 356, 565
BtuMI TCGCGA 1 cut(s) 103
BveI ACCTGC 1 cut(s) 1110
Cac8I GCNNGC 3 cut(s) 191, 595, 836
CfoI GCGC 3 cut(s) 195, 500, 730
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 138, 548
Cfr9I CCCGGG 1 cut(s) 481
Csp6I GTAC 2 cut(s) 808, 964
CviAII CATG 4 cut(s) 237, 495, 724, 874
CviQI GTAC 2 cut(s) 808, 964
DdeI CTNAG 2 cut(s) 48, 821
DpnI GATC 9 cut(s) 100, 294, 361, 383, 504, 826, 954, 983, 1020
DpnII GATC 9 cut(s) 98, 292, 359, 381, 502, 824, 952, 981, 1018
DraI TTTAAA 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
Eco105I TACGTA 1 cut(s) 229
Eco130I CCWWGG 3 cut(s) 309, 670, 873
Eco147I AGGCCT 1 cut(s) 639
Eco24I GRGCYC 1 cut(s) 712
Eco47I GGWCC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 765
Eco88I CYCGRG 1 cut(s) 481
Eco91I GGTNACC 1 cut(s) 200
EcoO65I GGTNACC 1 cut(s) 200
EcoT14I CCWWGG 3 cut(s) 309, 670, 873
EcoT38I GRGCYC 1 cut(s) 712
ErhI CCWWGG 3 cut(s) 309, 670, 873
FaeI CATG 4 cut(s) 240, 498, 727, 877
FaqI GGGAC 2 cut(s) 37, 779
FatI CATG 4 cut(s) 236, 494, 723, 873
FauI CCCGC 2 cut(s) 755, 843
Fnu4HI GCNGC 4 cut(s) 161, 306, 519, 1014
FokI GGATG 2 cut(s) 363, 572
FriOI GRGCYC 1 cut(s) 712
Fsp4HI GCNGC 4 cut(s) 161, 306, 519, 1014
FspBI CTAG 4 cut(s) 164, 371, 594, 969
FspI TGCGCA 1 cut(s) 194
GlaI GCGC 3 cut(s) 194, 499, 729
GluI GCNGC 4 cut(s) 161, 306, 519, 1014
HaeIII GGCC 2 cut(s) 139, 639
HapII CCGG 2 cut(s) 186, 482
HhaI GCGC 3 cut(s) 195, 500, 730
Hin1II CATG 4 cut(s) 240, 498, 727, 877
Hin6I GCGC 3 cut(s) 193, 498, 728
HinP1I GCGC 3 cut(s) 193, 498, 728
HincII GTYRAC 2 cut(s) 213, 1129
HindII GTYRAC 2 cut(s) 213, 1129
HindIII AAGCTT 2 cut(s) 405, 1087
HinfI GANTC 9 cut(s) 69, 453, 470, 486, 581, 786, 803, 886, 1049
HpaI GTTAAC 1 cut(s) 213
HpaII CCGG 2 cut(s) 186, 482
HphI GGTGA 3 cut(s) 212, 407, 1069
Hpy166II GTNNAC 3 cut(s) 213, 548, 1129
Hpy188I TCNGA 8 cut(s) 68, 243, 292, 440, 475, 802, 952, 1048
Hpy188III TCNNGA 5 cut(s) 102, 457, 783, 890, 956
Hpy8I GTNNAC 3 cut(s) 213, 548, 1129
Hpy99I CGWCG 1 cut(s) 832
HpyAV CCTTC 3 cut(s) 151, 629, 629
HpyCH4III ACNGT 2 cut(s) 247, 338
HpyCH4IV ACGT 6 cut(s) 215, 228, 741, 830, 864, 882
HpyF10VI GCNNNNNNNGC 2 cut(s) 157, 527
HpyF3I CTNAG 2 cut(s) 48, 821
HpySE526I ACGT 6 cut(s) 215, 228, 741, 830, 864, 882
Hsp92II CATG 4 cut(s) 240, 498, 727, 877
HspAI GCGC 3 cut(s) 193, 498, 728
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 9 cut(s) 98, 292, 359, 381, 502, 824, 952, 981, 1018
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 3 cut(s) 147, 505, 1025
MaeI CTAG 4 cut(s) 164, 371, 594, 969
MaeII ACGT 6 cut(s) 215, 228, 741, 830, 864, 882
MaeIII GTNAC 6 cut(s) 200, 299, 586, 682, 865, 883
MalI GATC 9 cut(s) 100, 294, 361, 383, 504, 826, 954, 983, 1020
MboI GATC 9 cut(s) 98, 292, 359, 381, 502, 824, 952, 981, 1018
MboII GAAGA 6 cut(s) 66, 274, 412, 497, 585, 1024
MhlI GDGCHC 5 cut(s) 185, 288, 482, 712, 836
MluCI AATT 4 cut(s) 441, 659, 904, 1114
MlyI GAGTC 4 cut(s) 63, 812, 880, 1058
MmeI TCCRAC 4 cut(s) 91, 198, 266, 780
MnlI CCTC 9 cut(s) 92, 105, 216, 306, 367, 604, 821, 928, 996
MroXI GAANNNNTTC 2 cut(s) 490, 580
MseI TTAA 3 cut(s) 212, 428, 1135
MslI CAYNNNNRTG 2 cut(s) 539, 689
MspA1I CMGCKG 2 cut(s) 796, 1016
MspI CCGG 2 cut(s) 186, 482
MspR9I CCNGG 2 cut(s) 482, 483
MvnI CGCG 2 cut(s) 103, 730
MwoI GCNNNNNNNGC 2 cut(s) 157, 527
NciI CCSGG 2 cut(s) 482, 483
NcoI CCATGG 1 cut(s) 873
NdeII GATC 9 cut(s) 98, 292, 359, 381, 502, 824, 952, 981, 1018
NheI GCTAGC 1 cut(s) 593
NlaIII CATG 4 cut(s) 240, 498, 727, 877
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 3 cut(s) 200, 682, 883
NruI TCGCGA 1 cut(s) 103
NsbI TGCGCA 1 cut(s) 194
NspI RCATGY 1 cut(s) 240
NspV TTCGAA 1 cut(s) 771
PceI AGGCCT 1 cut(s) 639
PcsI WCGNNNNNNNCGW 1 cut(s) 888
PdmI GAANNNNTTC 2 cut(s) 490, 580
PfeI GAWTC 5 cut(s) 453, 470, 486, 581, 786
PflMI CCANNNNNTGG 1 cut(s) 845
PkrI GCNGC 4 cut(s) 162, 307, 520, 1015
Ple19I CGATCG 1 cut(s) 101
PleI GAGTC 4 cut(s) 63, 811, 880, 1057
PpsI GAGTC 4 cut(s) 63, 811, 880, 1057
Ppu21I YACGTR 2 cut(s) 229, 883
Psp1406I AACGTT 1 cut(s) 215
PspEI GGTNACC 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 138, 548
PvuI CGATCG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 1016
RruI TCGCGA 1 cut(s) 103
RsaI GTAC 2 cut(s) 809, 965
RsaNI GTAC 2 cut(s) 808, 964
RseI CAYNNNNRTG 2 cut(s) 539, 689
SaqAI TTAA 3 cut(s) 212, 428, 1135
SatI GCNGC 4 cut(s) 161, 306, 519, 1014
Sau3AI GATC 9 cut(s) 98, 292, 359, 381, 502, 824, 952, 981, 1018
Sau96I GGNCC 2 cut(s) 138, 548
SchI GAGTC 4 cut(s) 63, 812, 880, 1058
ScrFI CCNGG 2 cut(s) 482, 483
SduI GDGCHC 5 cut(s) 185, 288, 482, 712, 836
SfuI TTCGAA 1 cut(s) 771
SinI GGWCC 1 cut(s) 548
SmaI CCCGGG 1 cut(s) 483
SmiMI CAYNNNNRTG 2 cut(s) 539, 689
SnaBI TACGTA 1 cut(s) 229
Sse9I AATT 4 cut(s) 441, 659, 904, 1114
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 6 cut(s) 306, 730, 762, 794, 836, 870
SspI AATATT 1 cut(s) 1072
SspMI CTAG 4 cut(s) 164, 371, 594, 969
StuI AGGCCT 1 cut(s) 639
StyD4I CCNGG 2 cut(s) 480, 481
StyI CCWWGG 3 cut(s) 309, 670, 873
TaaI ACNGT 2 cut(s) 247, 338
TaiI ACGT 6 cut(s) 218, 231, 744, 833, 867, 885
TaqI TCGA 9 cut(s) 97, 319, 468, 644, 771, 827, 984, 1035, 1052
TaqII GACCGA 1 cut(s) 121
TasI AATT 4 cut(s) 441, 659, 904, 1114
TatI WGTACW 1 cut(s) 963
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 5 cut(s) 453, 470, 486, 581, 786
Tru1I TTAA 3 cut(s) 212, 428, 1135
Tru9I TTAA 3 cut(s) 212, 428, 1135
TseFI GTSAC 3 cut(s) 200, 682, 883
TseI GCWGC 3 cut(s) 160, 518, 1013
Tsp45I GTSAC 3 cut(s) 200, 682, 883
TspDTI ATGAA 3 cut(s) 483, 648, 1098
TspGWI ACGGA 1 cut(s) 198
TspMI CCCGGG 1 cut(s) 481
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 548
XapI RAATTY 1 cut(s) 659
XceI RCATGY 1 cut(s) 240
XmaI CCCGGG 1 cut(s) 481
XmnI GAANNNNTTC 2 cut(s) 490, 580
XspI CTAG 4 cut(s) 164, 371, 594, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.