RLG00000006495

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014472
Physical Location & Seq
Forward (+)
7668470 .. 7671017
2548 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006495

Sequence Viewer

Length: 1092 bp
ATGAAGGAGCGCAGGTGCGCGGCTATGAATGCCTTTCGTGTTTGTGCCAGGCACAAGCCGGAAACCATAACAGCAAAAATGGCACCTTCCCTTTGTTTTGGTCCCTTCAGACTCCATTTCATGCTTTTAGTTTTCGCCATCTTGAACACCAGTTTACTTGCAAGTGACCCTCCTTTAACATTGGACTACTATGCATCTAATTGTCCCACTTTGTTTGAGATTGTAAAGAAAGAAATGGAGTGTGAAGTTCTCTCAGATCCTCGTAATGCTGCCTTGATAGTCCGGTTACACTTCCATGACTGTTTTGTTCAGGGATGTGATGGCTCAGTTTTGCTAGACGATACGATTTCACTAAAAGGAGAGAAGAAGGCTTCCACCAACATAAACTCTTTGAAAGGTTTCAGGATTATTGACAGGATAAAGAACAAGCTTGAATCAGAGTGTCCCGGAATTGTCTCTTGCGCCGATATTCTCACTATTGCAGCAAGAGATGCTGTGATTCTGGTTGGTGGACCTTATTGGGATGTTCCTCTAGGAAGAAAGGACTCTATAACTGCTAGTCCTGAACTTGCAGAAACCAACCTTCCTACTCCAGATGAAGGCCTTACGTCTATCATTTCCAAATTTCTTTACCAAGGCCTTTCGGTCACAGATGTGGTAGCTCTTTCAGGAGCTCACACAATCGGTATGGCACGGTGTCAGAATGTTCGAGCAAGGATCTATGGTGACTATGAATCAACCTCAGGAATCGACCCTCTTTCAGGGTCATACCTCAGCAGCTTGAGGTCAACTTGCCCCATAGGTGGAGATGAAAATAACACTACAGCCATGGACTATGTCACTCCTGAACAATTTGACAATTCTTTCTATCATTTACTATTGAAAGGGCAGGGACTACTCAACTCAGACCAGGAAATGTATTCTAGCTTGTTAGGTATCGAAACCAAGAAACTTGTTCAGAAGTATGCAGAAGACGCGATGGCTTTCTTCCAGCAATTCTCAGATTCAATGGTGAAAATGGGGAATATAACTAACGAGGACAGCGTTACCACCGGAGAGGTCAGGAAGAATTGCAGATTTGTGAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

364

Amino Acids

39.98

Weight (kDa)

5.49

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 75 - 325 2.1e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3
Acc36I ACCTGC 1 cut(s) 3
AccB1I GGYRCC 1 cut(s) 82
AccII CGCG 2 cut(s) 20, 977
AciI CCGC 1 cut(s) 20
AclWI GGATC 2 cut(s) 251, 725
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 91
AfiI CCNNNNNNNGG 3 cut(s) 599, 761, 803
AgsI TTSAA 5 cut(s) 145, 394, 434, 883, 1008
AjnI CCWGG 2 cut(s) 47, 909
AleI CACNNNNGTG 1 cut(s) 653
AluBI AGCT 5 cut(s) 430, 662, 674, 780, 927
AluI AGCT 5 cut(s) 430, 662, 674, 780, 927
Alw21I GWGCWC 1 cut(s) 676
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 2 cut(s) 251, 725
AoxI GGCC 2 cut(s) 601, 637
ApeKI GCWGC 3 cut(s) 269, 482, 777
ApoI RAATTY 1 cut(s) 623
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 3 cut(s) 12, 20, 464
AspS9I GGNCC 2 cut(s) 101, 512
AsuC2I CCSGG 1 cut(s) 447
AsuHPI GGTGA 2 cut(s) 737, 1024
AvaII GGWCC 2 cut(s) 101, 512
AxyI CCTNAGG 1 cut(s) 742
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 676
BbsI GAAGAC 1 cut(s) 978
Bbv12I GWGCWC 1 cut(s) 676
BbvCI CCTCAGC 1 cut(s) 773
BbvI GCAGC 3 cut(s) 256, 494, 789
BccI CCATC 3 cut(s) 146, 314, 973
BciT130I CCWGG 2 cut(s) 49, 911
BcnI CCSGG 1 cut(s) 447
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 4 cut(s) 335, 533, 558, 924
BfmI CTRYAG 1 cut(s) 822
BfuAI ACCTGC 1 cut(s) 3
BisI GCNGC 4 cut(s) 21, 270, 483, 778
BlsI GCNGC 4 cut(s) 22, 271, 484, 779
Bme1390I CCNGG 3 cut(s) 49, 447, 911
Bme18I GGWCC 2 cut(s) 101, 512
BmgT120I GGNCC 2 cut(s) 101, 512
BmiI GGNNCC 2 cut(s) 84, 103
BmrFI CCNGG 3 cut(s) 49, 447, 911
BmsI GCATC 2 cut(s) 203, 481
BpiI GAAGAC 1 cut(s) 978
BpmI CTGGAG 1 cut(s) 576
Bpu10I CCTNAGC 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 802
BpuMI CCSGG 1 cut(s) 447
BsaJI CCNNGG 2 cut(s) 634, 828
BsaWI WCCGGW 2 cut(s) 282, 1052
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 3 cut(s) 599, 761, 803
Bse1I ACTGG 1 cut(s) 150
Bse21I CCTNAGG 1 cut(s) 742
BseBI CCWGG 2 cut(s) 49, 911
BseDI CCNNGG 2 cut(s) 634, 828
BseGI GGATG 2 cut(s) 320, 529
BseLI CCNNNNNNNGG 3 cut(s) 599, 761, 803
BseMII CTCAG 6 cut(s) 267, 339, 756, 787, 918, 1014
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 3 cut(s) 256, 494, 789
Bsh1236I CGCG 2 cut(s) 20, 977
BshFI GGCC 2 cut(s) 603, 639
BshNI GGYRCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 676
BsiSI CCGG 4 cut(s) 59, 283, 447, 1053
BslFI GGGAC 4 cut(s) 87, 189, 429, 906
BslI CCNNNNNNNGG 3 cut(s) 599, 761, 803
BsmAI GTCTC 1 cut(s) 460
BsmFI GGGAC 4 cut(s) 87, 189, 429, 906
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 2 cut(s) 603, 639
Bsp1286I GDGCHC 1 cut(s) 676
Bsp143I GATC 2 cut(s) 256, 717
Bsp19I CCATGG 1 cut(s) 828
BspACI CCGC 1 cut(s) 20
BspANI GGCC 2 cut(s) 603, 639
BspCNI CTCAG 6 cut(s) 266, 338, 755, 786, 917, 1013
BspFNI CGCG 2 cut(s) 20, 977
BspLI GGNNCC 2 cut(s) 84, 103
BspMI ACCTGC 1 cut(s) 3
BspPI GGATC 2 cut(s) 251, 725
BspT107I GGYRCC 1 cut(s) 82
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 634, 828
BssMI GATC 2 cut(s) 256, 717
BssT1I CCWWGG 2 cut(s) 634, 828
Bst2UI CCWGG 2 cut(s) 49, 911
Bst4CI ACNGT 2 cut(s) 302, 696
BstAPI GCANNNNNTGC 1 cut(s) 491
BstDEI CTNAG 6 cut(s) 253, 325, 742, 773, 904, 1000
BstDSI CCRYGG 1 cut(s) 828
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 2 cut(s) 320, 529
BstFNI CGCG 2 cut(s) 20, 977
BstHHI GCGC 3 cut(s) 12, 20, 464
BstKTI GATC 2 cut(s) 259, 720
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 2 cut(s) 256, 717
BstMWI GCNNNNNNNGC 4 cut(s) 29, 80, 491, 974
BstNI CCWGG 2 cut(s) 49, 911
BstSCI CCNGG 3 cut(s) 47, 445, 909
BstSFI CTRYAG 1 cut(s) 822
BstUI CGCG 2 cut(s) 20, 977
BstV1I GCAGC 3 cut(s) 256, 494, 789
BstV2I GAAGAC 1 cut(s) 978
BstX2I RGATCY 2 cut(s) 256, 717
BstYI RGATCY 2 cut(s) 256, 717
Bsu36I CCTNAGG 1 cut(s) 742
BsuRI GGCC 2 cut(s) 603, 639
BtgI CCRYGG 1 cut(s) 828
BtgZI GCGATG 1 cut(s) 992
BtsCI GGATG 2 cut(s) 320, 529
BveI ACCTGC 1 cut(s) 3
CfoI GCGC 3 cut(s) 12, 20, 464
Cfr13I GGNCC 2 cut(s) 101, 512
CseI GACGC 1 cut(s) 983
CspCI CAANNNNNGTGG 2 cut(s) 196, 231
CviAII CATG 4 cut(s) 121, 296, 829, 1089
DdeI CTNAG 6 cut(s) 253, 325, 742, 773, 904, 1000
DpnI GATC 2 cut(s) 258, 719
DpnII GATC 2 cut(s) 256, 717
Ecl136II GAGCTC 1 cut(s) 674
Eco130I CCWWGG 2 cut(s) 634, 828
Eco147I AGGCCT 2 cut(s) 603, 639
Eco24I GRGCYC 1 cut(s) 676
Eco47I GGWCC 2 cut(s) 101, 512
Eco53kI GAGCTC 1 cut(s) 674
Eco57I CTGAAG 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 742
EcoICRI GAGCTC 1 cut(s) 674
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoRII CCWGG 2 cut(s) 47, 909
EcoT14I CCWWGG 2 cut(s) 634, 828
EcoT22I ATGCAT 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 2 cut(s) 634, 828
FaeI CATG 4 cut(s) 124, 299, 832, 1092
FaqI GGGAC 4 cut(s) 87, 189, 429, 906
FatI CATG 4 cut(s) 120, 295, 828, 1088
Fnu4HI GCNGC 4 cut(s) 21, 270, 483, 778
FokI GGATG 2 cut(s) 327, 536
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 4 cut(s) 21, 270, 483, 778
FspBI CTAG 4 cut(s) 335, 533, 558, 924
GlaI GCGC 3 cut(s) 11, 19, 463
GluI GCNGC 4 cut(s) 21, 270, 483, 778
GsuI CTGGAG 1 cut(s) 576
HaeIII GGCC 2 cut(s) 603, 639
HapII CCGG 4 cut(s) 59, 283, 447, 1053
HgaI GACGC 1 cut(s) 983
HhaI GCGC 3 cut(s) 12, 20, 464
Hin1II CATG 4 cut(s) 124, 299, 832, 1092
Hin6I GCGC 3 cut(s) 10, 18, 462
HinP1I GCGC 3 cut(s) 10, 18, 462
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 7 cut(s) 111, 434, 499, 545, 734, 747, 1004
HpaII CCGG 4 cut(s) 59, 283, 447, 1053
HphI GGTGA 2 cut(s) 737, 1024
Hpy166II GTNNAC 4 cut(s) 155, 512, 789, 1084
Hpy188I TCNGA 7 cut(s) 110, 256, 439, 702, 907, 960, 1003
Hpy188III TCNNGA 8 cut(s) 142, 403, 563, 593, 669, 744, 845, 1063
Hpy8I GTNNAC 4 cut(s) 155, 512, 789, 1084
HpyAV CCTTC 5 cut(s) 96, 115, 361, 593, 593
HpyCH4III ACNGT 2 cut(s) 302, 696
HpyCH4IV ACGT 1 cut(s) 608
HpyCH4V TGCA 6 cut(s) 161, 194, 482, 572, 968, 1074
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 80, 491, 974
HpyF3I CTNAG 6 cut(s) 253, 325, 742, 773, 904, 1000
HpySE526I ACGT 1 cut(s) 608
Hsp92II CATG 4 cut(s) 124, 299, 832, 1092
HspAI GCGC 3 cut(s) 10, 18, 462
Kzo9I GATC 2 cut(s) 256, 717
LmnI GCTCC 2 cut(s) 7, 671
Lsp1109I GCAGC 3 cut(s) 256, 494, 789
LweI GCATC 2 cut(s) 203, 481
MaeI CTAG 4 cut(s) 335, 533, 558, 924
MaeII ACGT 1 cut(s) 608
MaeIII GTNAC 6 cut(s) 164, 285, 646, 725, 838, 1045
MalI GATC 2 cut(s) 258, 719
MboI GATC 2 cut(s) 256, 717
MboII GAAGA 5 cut(s) 376, 549, 979, 983, 1078
MflI RGATCY 2 cut(s) 256, 717
MhlI GDGCHC 1 cut(s) 676
MluCI AATT 7 cut(s) 199, 450, 623, 851, 859, 995, 1069
MlyI GAGTC 2 cut(s) 105, 539
MnlI CCTC 9 cut(s) 180, 270, 540, 751, 765, 777, 782, 1030, 1051
Mph1103I ATGCAT 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 398
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 2 cut(s) 294, 653
MspI CCGG 4 cut(s) 59, 283, 447, 1053
MspR9I CCNGG 3 cut(s) 49, 447, 911
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 2 cut(s) 49, 911
MvnI CGCG 2 cut(s) 20, 977
MwoI GCNNNNNNNGC 4 cut(s) 29, 80, 491, 974
NciI CCSGG 1 cut(s) 447
NcoI CCATGG 1 cut(s) 828
NdeII GATC 2 cut(s) 256, 717
NlaIII CATG 4 cut(s) 124, 299, 832, 1092
NlaIV GGNNCC 2 cut(s) 84, 103
NmuCI GTSAC 4 cut(s) 164, 646, 725, 838
NsiI ATGCAT 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 653
PaqCI CACCTGC 1 cut(s) 3
PceI AGGCCT 2 cut(s) 603, 639
PcsI WCGNNNNNNNCGW 1 cut(s) 1041
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 5 cut(s) 434, 499, 734, 747, 1004
PflFI GACNNNGTC 1 cut(s) 836
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 4 cut(s) 22, 271, 484, 779
PleI GAGTC 2 cut(s) 105, 539
PpsI GAGTC 2 cut(s) 105, 539
Psp124BI GAGCTC 1 cut(s) 676
Psp6I CCWGG 2 cut(s) 47, 909
PspGI CCWGG 2 cut(s) 47, 909
PspN4I GGNNCC 2 cut(s) 84, 103
PspPI GGNCC 2 cut(s) 101, 512
PsuI RGATCY 2 cut(s) 256, 717
PsyI GACNNNGTC 1 cut(s) 836
RseI CAYNNNNRTG 2 cut(s) 294, 653
SacI GAGCTC 1 cut(s) 676
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 4 cut(s) 21, 270, 483, 778
Sau3AI GATC 2 cut(s) 256, 717
Sau96I GGNCC 2 cut(s) 101, 512
SchI GAGTC 2 cut(s) 105, 539
ScrFI CCNGG 3 cut(s) 49, 447, 911
SduI GDGCHC 1 cut(s) 676
SfaNI GCATC 2 cut(s) 203, 481
SfcI CTRYAG 1 cut(s) 822
SinI GGWCC 2 cut(s) 101, 512
SmiMI CAYNNNNRTG 2 cut(s) 294, 653
SmlI CTYRAG 1 cut(s) 781
SmoI CTYRAG 1 cut(s) 781
Sse9I AATT 7 cut(s) 199, 450, 623, 851, 859, 995, 1069
SseBI AGGCCT 2 cut(s) 603, 639
SsiI CCGC 1 cut(s) 20
SspMI CTAG 4 cut(s) 335, 533, 558, 924
SstI GAGCTC 1 cut(s) 676
StuI AGGCCT 2 cut(s) 603, 639
StyD4I CCNGG 3 cut(s) 47, 445, 909
StyI CCWWGG 2 cut(s) 634, 828
TaaI ACNGT 2 cut(s) 302, 696
TaiI ACGT 1 cut(s) 611
TaqI TCGA 3 cut(s) 709, 750, 939
TaqII GACCGA 1 cut(s) 634
TasI AATT 7 cut(s) 199, 450, 623, 851, 859, 995, 1069
TauI GCSGC 1 cut(s) 23
TfiI GAWTC 5 cut(s) 434, 499, 734, 747, 1004
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseFI GTSAC 4 cut(s) 164, 646, 725, 838
TseI GCWGC 3 cut(s) 269, 482, 777
Tsp45I GTSAC 4 cut(s) 164, 646, 725, 838
TspDTI ATGAA 6 cut(s) 17, 41, 109, 612, 747, 825
Tth111I GACNNNGTC 1 cut(s) 836
VpaK11BI GGWCC 2 cut(s) 101, 512
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 1 cut(s) 623
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 4 cut(s) 335, 533, 558, 924
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.