MD13G1053000.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0014472
Physical Location & Seq
Reverse (-)
3757449 .. 3759212
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1053000.v1.1.491

Sequence Viewer

Length: 1017 bp
ATGGCTCCTTCCCTTGGCTCCCGACCCTTCGTTGTGCAACTTTTGCTGCTAGTTTTCTCCGTTTTGAGCACCGGCTTGCGTGCAGGTGACCCTCCGTTAACTTTGGACTACTACAAATCTGCATGTCCGACTGTGTTTGACATTGTGAAGAAAGAAATGGAATGTGCTGTGCTCTCTGATCCTCGTAACGCTGCCTTGGTAGTTCGGTTGCATTTCCACGACTGTTTTGTTCAGGGATGTGATGGATCGGTTTTGCTAGAGGACACAATCGACCTGACAGGGGAGAAGAACGCTTTGCCCAACATACACTCTTTAAAAGGTTTCAGAATTGTTGACAGAATCAAGAACCAGCTCGAATCAGAATGCCCAGGAATCGTTTCATGCGCTGATCTTCTCACTATTGCTGCAAGAGATGCTGTGATTTTGGTTGGTGGACCTTATTGGGATGTTCCTCTAGGAAGAAAAGATTCCGTAACTGCTAGCCCTGAACTTGCAGATGCTAACATTCCTACTCCAAATGAAGGCCTTCTGAAAATCATCTCCAAATTTCTTTACCAAGGCTTATCAGTCACAGATATGGTGGCTCTTTCAGGAGCTCACACAATCGGCATGGCGCGGTGTGAGAACGTAAGAGAAAGGATTTATAGTGGCGAATTCGAAGCAACTTCAGGATTCAATCCGCCGTCTGAGTCGCACCTCAGCAACCTGAGATCGACGTGCCCACCAGTTGGCGGGGACAATAACGTAACCGCCATGGATTACGTGACTCCCGAACTCTTTGATAATTCTTTCTATCAACTGCTGCTGAAAGGGGAGGGAGTGCTAAACTCAGATCAGGAAATGTACTCTAGTTTGTTGGGGATCGAAACGGGGGAGATTGTGAAGAAGTATGCAGCTGATCCAATTGCTTTCTTCGAGCAGTTTTCGGAGTCGATGGTGAAGTTGGGAAATATTCCTAACGATGAAAGCTTTGAGAATGGAGAAGTGAGAAAAAATTGCAGGTTTGTCAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

339

Amino Acids

36.87

Weight (kDa)

4.75

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 300 4.5e-76 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 74
Acc36I ACCTGC 2 cut(s) 74, 990
AccB7I CCANNNNNTGG 1 cut(s) 728
AccII CGCG 1 cut(s) 616
AciI CCGC 4 cut(s) 616, 680, 732, 750
AclWI GGATC 4 cut(s) 173, 253, 869, 893
AcsI RAATTY 2 cut(s) 545, 653
AcuI CTGAAG 1 cut(s) 651
AfaI GTAC 1 cut(s) 845
AfiI CCNNNNNNNGG 5 cut(s) 14, 280, 521, 728, 731
AgsI TTSAA 1 cut(s) 676
AjiI CACGTC 1 cut(s) 717
AjnI CCWGG 1 cut(s) 367
AluBI AGCT 4 cut(s) 352, 596, 896, 969
AluI AGCT 4 cut(s) 352, 596, 896, 969
Alw21I GWGCWC 3 cut(s) 71, 174, 598
AlwI GGATC 4 cut(s) 173, 253, 869, 893
AoxI GGCC 1 cut(s) 523
ApeKI GCWGC 5 cut(s) 46, 191, 404, 802, 893
ApoI RAATTY 2 cut(s) 545, 653
Asp700I GAANNNNTTC 3 cut(s) 376, 466, 525
AspLEI GCGC 2 cut(s) 386, 616
AspS9I GGNCC 1 cut(s) 434
AsuHPI GGTGA 2 cut(s) 98, 949
AsuII TTCGAA 1 cut(s) 657
AsuNHI GCTAGC 1 cut(s) 479
AvaII GGWCC 1 cut(s) 434
BaeGI GKGCMC 1 cut(s) 722
BanII GRGCYC 1 cut(s) 598
Bbv12I GWGCWC 3 cut(s) 71, 174, 598
BbvCI CCTCAGC 1 cut(s) 698
BbvI GCAGC 5 cut(s) 33, 178, 391, 789, 905
BccI CCATC 2 cut(s) 236, 928
BceAI ACGGC 1 cut(s) 667
BciT130I CCWGG 1 cut(s) 369
BfaI CTAG 5 cut(s) 50, 257, 455, 480, 849
BfuAI ACCTGC 2 cut(s) 74, 990
BisI GCNGC 5 cut(s) 47, 192, 405, 803, 894
BlsI GCNGC 5 cut(s) 48, 193, 406, 804, 895
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 1 cut(s) 434
BmgBI CACGTC 1 cut(s) 717
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 2 cut(s) 6, 19
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 403, 487
BmtI GCTAGC 1 cut(s) 483
Bpu10I CCTNAGC 1 cut(s) 698
Bpu14I TTCGAA 1 cut(s) 657
BsaAI YACGTR 1 cut(s) 763
BsaJI CCNNGG 5 cut(s) 13, 195, 367, 556, 753
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 280, 521, 728, 731
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 725
BseBI CCWGG 1 cut(s) 369
BseDI CCNNGG 5 cut(s) 13, 195, 367, 556, 753
BseGI GGATG 2 cut(s) 242, 451
BseLI CCNNNNNNNGG 5 cut(s) 14, 280, 521, 728, 731
BseMII CTCAG 4 cut(s) 678, 698, 712, 843
BseNI ACTGG 1 cut(s) 725
BseSI GKGCMC 1 cut(s) 722
BseXI GCAGC 5 cut(s) 33, 178, 391, 789, 905
BsgI GTGCAG 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 616
BshFI GGCC 1 cut(s) 525
BsiHKAI GWGCWC 3 cut(s) 71, 174, 598
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 5 cut(s) 14, 280, 521, 728, 731
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 1 cut(s) 525
Bsp119I TTCGAA 1 cut(s) 657
Bsp1286I GDGCHC 4 cut(s) 71, 174, 598, 722
Bsp143I GATC 7 cut(s) 178, 245, 388, 710, 832, 861, 898
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 4 cut(s) 616, 680, 732, 750
BspANI GGCC 1 cut(s) 525
BspCNI CTCAG 4 cut(s) 679, 699, 711, 842
BspFNI CGCG 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 6, 19
BspMI ACCTGC 2 cut(s) 74, 990
BspOI GCTAGC 1 cut(s) 483
BspPI GGATC 4 cut(s) 173, 253, 869, 893
BspT104I TTCGAA 1 cut(s) 657
BsrFI RCCGGY 1 cut(s) 71
BsrI ACTGG 1 cut(s) 725
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 5 cut(s) 13, 195, 367, 556, 753
BssMI GATC 7 cut(s) 178, 245, 388, 710, 832, 861, 898
BssT1I CCWWGG 4 cut(s) 13, 195, 556, 753
Bst2UI CCWGG 1 cut(s) 369
Bst4CI ACNGT 2 cut(s) 133, 224
BstAPI GCANNNNNTGC 2 cut(s) 43, 413
BstBAI YACGTR 1 cut(s) 763
BstBI TTCGAA 1 cut(s) 657
BstC8I GCNNGC 3 cut(s) 77, 81, 481
BstDEI CTNAG 4 cut(s) 687, 698, 707, 829
BstDSI CCRYGG 1 cut(s) 753
BstEII GGTNACC 1 cut(s) 86
BstF5I GGATG 2 cut(s) 242, 451
BstFNI CGCG 1 cut(s) 616
BstHHI GCGC 2 cut(s) 386, 616
BstKTI GATC 7 cut(s) 181, 248, 391, 713, 835, 864, 901
BstMBI GATC 7 cut(s) 178, 245, 388, 710, 832, 861, 898
BstMWI GCNNNNNNNGC 2 cut(s) 43, 413
BstNI CCWGG 1 cut(s) 369
BstNSI RCATGY 1 cut(s) 126
BstPI GGTNACC 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 367
BstSLI GKGCMC 1 cut(s) 722
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 5 cut(s) 33, 178, 391, 789, 905
BsuRI GGCC 1 cut(s) 525
BtgI CCRYGG 1 cut(s) 753
BtrI CACGTC 1 cut(s) 717
BtsCI GGATG 2 cut(s) 242, 451
BveI ACCTGC 2 cut(s) 74, 990
Cac8I GCNNGC 3 cut(s) 77, 81, 481
CfoI GCGC 2 cut(s) 386, 616
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 434
Csp6I GTAC 1 cut(s) 844
CviAII CATG 4 cut(s) 123, 381, 610, 754
CviQI GTAC 1 cut(s) 844
DdeI CTNAG 4 cut(s) 687, 698, 707, 829
DpnI GATC 7 cut(s) 180, 247, 390, 712, 834, 863, 900
DpnII GATC 7 cut(s) 178, 245, 388, 710, 832, 861, 898
DraI TTTAAA 1 cut(s) 315
EciI GGCGGA 1 cut(s) 669
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 4 cut(s) 13, 195, 556, 753
Eco147I AGGCCT 1 cut(s) 525
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 1 cut(s) 434
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 651
Eco91I GGTNACC 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 653
EcoRII CCWGG 1 cut(s) 367
EcoT14I CCWWGG 4 cut(s) 13, 195, 556, 753
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 4 cut(s) 13, 195, 556, 753
FaeI CATG 4 cut(s) 126, 384, 613, 757
FaiI YATR 8 cut(s) 124, 305, 382, 578, 611, 645, 755, 891
FaqI GGGAC 1 cut(s) 749
FatI CATG 4 cut(s) 122, 380, 609, 753
FauI CCCGC 1 cut(s) 725
Fnu4HI GCNGC 5 cut(s) 47, 192, 405, 803, 894
FokI GGATG 2 cut(s) 249, 458
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 5 cut(s) 47, 192, 405, 803, 894
FspBI CTAG 5 cut(s) 50, 257, 455, 480, 849
GlaI GCGC 2 cut(s) 385, 615
GluI GCNGC 5 cut(s) 47, 192, 405, 803, 894
HaeIII GGCC 1 cut(s) 525
HapII CCGG 1 cut(s) 72
HhaI GCGC 2 cut(s) 386, 616
Hin1II CATG 4 cut(s) 126, 384, 613, 757
Hin6I GCGC 2 cut(s) 384, 614
HinP1I GCGC 2 cut(s) 384, 614
HincII GTYRAC 3 cut(s) 99, 334, 1009
HindII GTYRAC 3 cut(s) 99, 334, 1009
HindIII AAGCTT 1 cut(s) 967
HinfI GANTC 8 cut(s) 339, 356, 372, 467, 672, 689, 766, 929
HpaI GTTAAC 1 cut(s) 99
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 98, 949
Hpy166II GTNNAC 4 cut(s) 99, 334, 434, 1009
Hpy188I TCNGA 8 cut(s) 129, 178, 326, 361, 531, 688, 832, 928
Hpy188III TCNNGA 6 cut(s) 21, 343, 591, 669, 770, 836
Hpy8I GTNNAC 4 cut(s) 99, 334, 434, 1009
Hpy99I CGWCG 1 cut(s) 718
HpyAV CCTTC 4 cut(s) 18, 37, 515, 536
HpyCH4III ACNGT 2 cut(s) 133, 224
HpyCH4IV ACGT 4 cut(s) 627, 716, 744, 762
HpyCH4V TGCA 8 cut(s) 37, 83, 122, 211, 407, 494, 893, 999
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 413
HpyF3I CTNAG 4 cut(s) 687, 698, 707, 829
HpySE526I ACGT 4 cut(s) 627, 716, 744, 762
Hsp92II CATG 4 cut(s) 126, 384, 613, 757
HspAI GCGC 2 cut(s) 384, 614
KspAI GTTAAC 1 cut(s) 99
Kzo9I GATC 7 cut(s) 178, 245, 388, 710, 832, 861, 898
LmnI GCTCC 3 cut(s) 10, 23, 593
Lsp1109I GCAGC 5 cut(s) 33, 178, 391, 789, 905
LweI GCATC 2 cut(s) 403, 487
MaeI CTAG 5 cut(s) 50, 257, 455, 480, 849
MaeII ACGT 4 cut(s) 627, 716, 744, 762
MaeIII GTNAC 6 cut(s) 86, 185, 472, 568, 745, 763
MalI GATC 7 cut(s) 180, 247, 390, 712, 834, 863, 900
MboI GATC 7 cut(s) 178, 245, 388, 710, 832, 861, 898
MboII GAAGA 6 cut(s) 160, 298, 383, 471, 895, 904
MfeI CAATTG 1 cut(s) 903
MhlI GDGCHC 4 cut(s) 71, 174, 598, 722
MluCI AATT 6 cut(s) 327, 545, 653, 784, 903, 994
MlyI GAGTC 3 cut(s) 698, 760, 938
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 6 cut(s) 102, 192, 253, 462, 707, 808
MroXI GAANNNNTTC 3 cut(s) 376, 466, 525
MseI TTAA 2 cut(s) 98, 314
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 896
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 1 cut(s) 369
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 2 cut(s) 43, 413
NcoI CCATGG 1 cut(s) 753
NdeII GATC 7 cut(s) 178, 245, 388, 710, 832, 861, 898
NheI GCTAGC 1 cut(s) 479
NlaIII CATG 4 cut(s) 126, 384, 613, 757
NlaIV GGNNCC 2 cut(s) 6, 19
NmuCI GTSAC 3 cut(s) 86, 568, 763
NspI RCATGY 1 cut(s) 126
NspV TTCGAA 1 cut(s) 657
PaqCI CACCTGC 1 cut(s) 74
PceI AGGCCT 1 cut(s) 525
PcsI WCGNNNNNNNCGW 1 cut(s) 768
PctI GAATGC 1 cut(s) 368
PdmI GAANNNNTTC 3 cut(s) 376, 466, 525
PfeI GAWTC 5 cut(s) 339, 356, 372, 467, 672
PflMI CCANNNNNTGG 1 cut(s) 728
PkrI GCNGC 5 cut(s) 48, 193, 406, 804, 895
PleI GAGTC 3 cut(s) 697, 760, 937
PpsI GAGTC 3 cut(s) 697, 760, 937
Ppu21I YACGTR 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 367
PspEI GGTNACC 1 cut(s) 86
PspGI CCWGG 1 cut(s) 367
PspN4I GGNNCC 2 cut(s) 6, 19
PspPI GGNCC 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 1 cut(s) 845
RsaNI GTAC 1 cut(s) 844
RseI CAYNNNNRTG 1 cut(s) 575
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 2 cut(s) 98, 314
SatI GCNGC 5 cut(s) 47, 192, 405, 803, 894
Sau3AI GATC 7 cut(s) 178, 245, 388, 710, 832, 861, 898
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 3 cut(s) 698, 760, 938
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 4 cut(s) 71, 174, 598, 722
SfaNI GCATC 2 cut(s) 403, 487
SfuI TTCGAA 1 cut(s) 657
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 575
Sse9I AATT 6 cut(s) 327, 545, 653, 784, 903, 994
SseBI AGGCCT 1 cut(s) 525
SsiI CCGC 4 cut(s) 616, 680, 732, 750
SspI AATATT 1 cut(s) 952
SspMI CTAG 5 cut(s) 50, 257, 455, 480, 849
SstI GAGCTC 1 cut(s) 598
StuI AGGCCT 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 4 cut(s) 13, 195, 556, 753
TaaI ACNGT 2 cut(s) 133, 224
TaiI ACGT 4 cut(s) 630, 719, 747, 765
TaqI TCGA 7 cut(s) 270, 354, 657, 713, 864, 915, 932
TasI AATT 6 cut(s) 327, 545, 653, 784, 903, 994
TatI WGTACW 1 cut(s) 843
TfiI GAWTC 5 cut(s) 339, 356, 372, 467, 672
Tru1I TTAA 2 cut(s) 98, 314
Tru9I TTAA 2 cut(s) 98, 314
TseFI GTSAC 3 cut(s) 86, 568, 763
TseI GCWGC 5 cut(s) 46, 191, 404, 802, 893
Tsp45I GTSAC 3 cut(s) 86, 568, 763
TspDTI ATGAA 3 cut(s) 369, 534, 978
TspGWI ACGGA 3 cut(s) 49, 84, 460
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 2 cut(s) 545, 653
XceI RCATGY 1 cut(s) 126
XmnI GAANNNNTTC 3 cut(s) 376, 466, 525
XspI CTAG 5 cut(s) 50, 257, 455, 480, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.