Rh4DG353600

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014472
Physical Location & Seq
Reverse (-)
57503795 .. 57505217
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG353600.1

Sequence Viewer

Length: 1014 bp
ATGGCACCTTCCCTTTGTTTTGGTCCCTTCAGACTCCATTTCATGCTTTTAGTTTTCGCCATCTTGAACACCGGTTTACTTGCAAGTGACCCTCCTTTAACATTGGACTACTATGCATCTAATTGTCCCACTTTGTTTGATATTGTAAAGAAAGAAATGGAGTGTGAAGTTCTCTCAGATCCTCGTAATGCTGCCTTGATAGTCCGGTTACACTTCCATGACTGTTTTGTTCAGGGATGTGATGGTTCAGTTTTGCTAGACGATACGATTTCACTAAAAGGAGAGAAGAAGGCTTCCACCAACATAAACTCTTTGAAAGGTTTCAGGATTATTGACAGGATAAAGAACAAGCTTGAATCAGAGTGTCCCGGAATTGTCTCTTGTGCCGATATTCTCACTATTGCAGCAAGAGATGCTGTGATTCTGGTTGGTGGACCTTATTGGGATGTTCCTCTGGGAAGAAAGGACTCTATAACTGCTAGTCCTGAACTTGCAGAAACCAACCTTCCTACTCCAGAAGAAGGCCTTACGTCTATCATTTCCAAATTTCTTTACCAAGGCCTTTCGGTCACAGATGTGGTAGCTCTTTCAGGAGCTCACACAATCGGTATGGCACGGTGTCAGAATGTTCGAGCAAGGATCTATGGTGACTATGAATCAACCTCAGGAATCGACCCTCTTTCAGGGTCATACCTCAGCAGCTTGAGGTCAACTTGCCCCATAGGTGGAGATGAAAATAACATTACAGCCATGGACTATGTCACTCCTGAACTATTTGACAATTCTTTCTATCATTTACTATTGAAAGGGCAGGGACTACTCAACTCAGACCAGGAAATGTATTCTAGCTTGTTGGGTATCGAAACCAAGAAACTTGTTCACAAGTATGCAGAAGACGCGATTGCTTTCTTCCAGCAATTCTCAGATTCAATGGTGAAAATGGGGAATATAACTAACGAGGACAGCTTTACCACCGGAGAGGTCAGGAAGAATTGCAGATTTGTGAACACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

337

Amino Acids

36.99

Weight (kDa)

4.98

Isoelectric Point (pI)

35.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 299 2e-77 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 1 cut(s) 899
AclWI GGATC 2 cut(s) 173, 647
AcsI RAATTY 1 cut(s) 545
AcuI CTGAAG 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 521, 683, 725
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 5 cut(s) 67, 316, 356, 805, 930
AjnI CCWGG 1 cut(s) 831
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 6 cut(s) 352, 584, 596, 702, 849, 966
AluI AGCT 6 cut(s) 352, 584, 596, 702, 849, 966
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 173, 647
AoxI GGCC 2 cut(s) 523, 559
ApeKI GCWGC 3 cut(s) 191, 404, 699
ApoI RAATTY 1 cut(s) 545
AsiGI ACCGGT 1 cut(s) 71
Asp700I GAANNNNTTC 1 cut(s) 320
AspS9I GGNCC 2 cut(s) 23, 434
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 659, 946
AvaII GGWCC 2 cut(s) 23, 434
AxyI CCTNAGG 1 cut(s) 664
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 900
Bbv12I GWGCWC 1 cut(s) 598
BbvCI CCTCAGC 1 cut(s) 695
BbvI GCAGC 3 cut(s) 178, 416, 711
BccI CCATC 2 cut(s) 68, 236
BciT130I CCWGG 1 cut(s) 833
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 257, 480, 846
BisI GCNGC 3 cut(s) 192, 405, 700
BlsI GCNGC 3 cut(s) 193, 406, 701
Bme1390I CCNGG 2 cut(s) 369, 833
Bme18I GGWCC 2 cut(s) 23, 434
BmgT120I GGNCC 2 cut(s) 23, 434
BmiI GGNNCC 2 cut(s) 6, 25
BmrFI CCNGG 2 cut(s) 369, 833
BmsI GCATC 2 cut(s) 125, 403
BpiI GAAGAC 1 cut(s) 900
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 724
BpuMI CCSGG 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 556, 750
BsaWI WCCGGW 3 cut(s) 71, 204, 974
Bsc4I CCNNNNNNNGG 3 cut(s) 521, 683, 725
Bse118I RCCGGY 1 cut(s) 71
Bse21I CCTNAGG 1 cut(s) 664
BseBI CCWGG 1 cut(s) 833
BseDI CCNNGG 2 cut(s) 556, 750
BseGI GGATG 2 cut(s) 242, 451
BseLI CCNNNNNNNGG 3 cut(s) 521, 683, 725
BseMII CTCAG 5 cut(s) 189, 678, 709, 840, 936
BseXI GCAGC 3 cut(s) 178, 416, 711
Bsh1236I CGCG 1 cut(s) 899
BshFI GGCC 2 cut(s) 525, 561
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 71
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 4 cut(s) 72, 205, 369, 975
BslFI GGGAC 4 cut(s) 9, 111, 351, 828
BslI CCNNNNNNNGG 3 cut(s) 521, 683, 725
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 4 cut(s) 9, 111, 351, 828
BsnI GGCC 2 cut(s) 525, 561
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 2 cut(s) 178, 639
Bsp19I CCATGG 1 cut(s) 750
BspANI GGCC 2 cut(s) 525, 561
BspCNI CTCAG 5 cut(s) 188, 677, 708, 839, 935
BspFNI CGCG 1 cut(s) 899
BspLI GGNNCC 2 cut(s) 6, 25
BspPI GGATC 2 cut(s) 173, 647
BspT107I GGYRCC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 556, 750
BssMI GATC 2 cut(s) 178, 639
BssT1I CCWWGG 2 cut(s) 556, 750
Bst2UI CCWGG 1 cut(s) 833
Bst4CI ACNGT 2 cut(s) 224, 618
BstAPI GCANNNNNTGC 1 cut(s) 413
BstDEI CTNAG 5 cut(s) 175, 664, 695, 826, 922
BstDSI CCRYGG 1 cut(s) 750
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 242, 451
BstFNI CGCG 1 cut(s) 899
BstKTI GATC 2 cut(s) 181, 642
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 178, 639
BstMWI GCNNNNNNNGC 2 cut(s) 413, 896
BstNI CCWGG 1 cut(s) 833
BstSCI CCNGG 2 cut(s) 367, 831
BstUI CGCG 1 cut(s) 899
BstV1I GCAGC 3 cut(s) 178, 416, 711
BstV2I GAAGAC 1 cut(s) 900
BstX2I RGATCY 2 cut(s) 178, 639
BstYI RGATCY 2 cut(s) 178, 639
Bsu36I CCTNAGG 1 cut(s) 664
BsuRI GGCC 2 cut(s) 525, 561
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 2 cut(s) 242, 451
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 2 cut(s) 23, 434
CseI GACGC 1 cut(s) 905
CspAI ACCGGT 1 cut(s) 71
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 4 cut(s) 43, 218, 751, 1011
DdeI CTNAG 5 cut(s) 175, 664, 695, 826, 922
DpnI GATC 2 cut(s) 180, 641
DpnII GATC 2 cut(s) 178, 639
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 2 cut(s) 556, 750
Eco147I AGGCCT 2 cut(s) 525, 561
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 23, 434
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 664
EcoICRI GAGCTC 1 cut(s) 596
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoRII CCWGG 1 cut(s) 831
EcoT14I CCWWGG 2 cut(s) 556, 750
EcoT22I ATGCAT 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 2 cut(s) 556, 750
FaeI CATG 4 cut(s) 46, 221, 754, 1014
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 4 cut(s) 9, 111, 351, 828
FatI CATG 4 cut(s) 42, 217, 750, 1010
Fnu4HI GCNGC 3 cut(s) 192, 405, 700
FokI GGATG 2 cut(s) 249, 458
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 3 cut(s) 192, 405, 700
FspBI CTAG 3 cut(s) 257, 480, 846
GluI GCNGC 3 cut(s) 192, 405, 700
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 2 cut(s) 525, 561
HapII CCGG 4 cut(s) 72, 205, 369, 975
HgaI GACGC 1 cut(s) 905
Hin1II CATG 4 cut(s) 46, 221, 754, 1014
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 7 cut(s) 33, 356, 421, 467, 656, 669, 926
HpaII CCGG 4 cut(s) 72, 205, 369, 975
HphI GGTGA 2 cut(s) 659, 946
Hpy166II GTNNAC 5 cut(s) 77, 434, 711, 880, 1006
Hpy188I TCNGA 6 cut(s) 32, 178, 361, 624, 829, 925
Hpy188III TCNNGA 8 cut(s) 64, 325, 485, 515, 591, 666, 767, 985
Hpy8I GTNNAC 5 cut(s) 77, 434, 711, 880, 1006
HpyAV CCTTC 5 cut(s) 18, 37, 283, 515, 515
HpyCH4III ACNGT 2 cut(s) 224, 618
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 6 cut(s) 83, 116, 404, 494, 890, 996
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 896
HpyF3I CTNAG 5 cut(s) 175, 664, 695, 826, 922
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 4 cut(s) 46, 221, 754, 1014
Kzo9I GATC 2 cut(s) 178, 639
LmnI GCTCC 1 cut(s) 593
Lsp1109I GCAGC 3 cut(s) 178, 416, 711
LweI GCATC 2 cut(s) 125, 403
MaeI CTAG 3 cut(s) 257, 480, 846
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 5 cut(s) 86, 207, 568, 647, 760
MalI GATC 2 cut(s) 180, 641
MboI GATC 2 cut(s) 178, 639
MboII GAAGA 6 cut(s) 298, 471, 530, 901, 905, 1000
MflI RGATCY 2 cut(s) 178, 639
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 6 cut(s) 121, 372, 545, 781, 917, 991
MlyI GAGTC 2 cut(s) 27, 461
MnlI CCTC 9 cut(s) 102, 192, 462, 673, 687, 699, 704, 952, 973
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 3 cut(s) 216, 575, 885
MspI CCGG 4 cut(s) 72, 205, 369, 975
MspR9I CCNGG 2 cut(s) 369, 833
MvaI CCWGG 1 cut(s) 833
MvnI CGCG 1 cut(s) 899
MwoI GCNNNNNNNGC 2 cut(s) 413, 896
NciI CCSGG 1 cut(s) 369
NcoI CCATGG 1 cut(s) 750
NdeII GATC 2 cut(s) 178, 639
NlaIII CATG 4 cut(s) 46, 221, 754, 1014
NlaIV GGNNCC 2 cut(s) 6, 25
NmuCI GTSAC 4 cut(s) 86, 568, 647, 760
NsiI ATGCAT 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 575
PceI AGGCCT 2 cut(s) 525, 561
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 5 cut(s) 356, 421, 656, 669, 926
PflFI GACNNNGTC 1 cut(s) 758
PfoI TCCNGGA 1 cut(s) 367
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 3 cut(s) 193, 406, 701
PleI GAGTC 2 cut(s) 27, 461
PpsI GAGTC 2 cut(s) 27, 461
Psp124BI GAGCTC 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 831
PspGI CCWGG 1 cut(s) 831
PspN4I GGNNCC 2 cut(s) 6, 25
PspPI GGNCC 2 cut(s) 23, 434
PsuI RGATCY 2 cut(s) 178, 639
PsyI GACNNNGTC 1 cut(s) 758
RseI CAYNNNNRTG 3 cut(s) 216, 575, 885
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 3 cut(s) 192, 405, 700
Sau3AI GATC 2 cut(s) 178, 639
Sau96I GGNCC 2 cut(s) 23, 434
SchI GAGTC 2 cut(s) 27, 461
ScrFI CCNGG 2 cut(s) 369, 833
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 2 cut(s) 125, 403
SinI GGWCC 2 cut(s) 23, 434
SmiMI CAYNNNNRTG 3 cut(s) 216, 575, 885
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 6 cut(s) 121, 372, 545, 781, 917, 991
SseBI AGGCCT 2 cut(s) 525, 561
SspMI CTAG 3 cut(s) 257, 480, 846
SstI GAGCTC 1 cut(s) 598
StuI AGGCCT 2 cut(s) 525, 561
StyD4I CCNGG 2 cut(s) 367, 831
StyI CCWWGG 2 cut(s) 556, 750
TaaI ACNGT 2 cut(s) 224, 618
TaiI ACGT 1 cut(s) 533
TaqI TCGA 3 cut(s) 631, 672, 861
TaqII GACCGA 1 cut(s) 556
TasI AATT 6 cut(s) 121, 372, 545, 781, 917, 991
TfiI GAWTC 5 cut(s) 356, 421, 656, 669, 926
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 4 cut(s) 86, 568, 647, 760
TseI GCWGC 3 cut(s) 191, 404, 699
Tsp45I GTSAC 4 cut(s) 86, 568, 647, 760
TspDTI ATGAA 3 cut(s) 31, 669, 747
Tth111I GACNNNGTC 1 cut(s) 758
VpaK11BI GGWCC 2 cut(s) 23, 434
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 1 cut(s) 545
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 3 cut(s) 257, 480, 846
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.