Rh4CG374000

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0014472
Physical Location & Seq
Reverse (-)
62809696 .. 62813327
3632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG374000.1

Sequence Viewer

Length: 777 bp
ATGGCACCTTCCCTTTGTTTTGGTCCCTTCAGACTCCATTTCATGCTTTTAGTTTTCGCCATCTTGAACACCAGTTTACTTGCAAGTGACCCTCCTTTAACATTGGACTACTATGCATCTAATTGTCCCACTTTGTTTGAGATTGTAAAGAAAGAAATGGAGTGTGAAGTTCTCTCAGATCCTCGTAATGCTGCCTTGATAGTCCGGTTACACTTCCATGACTGTTTTGTTCAGGGATGTGATGGTTCAGTTTTGCTAGACGATACGATTTCACTAAAAGGAGAGAAGAAGGCTTCCACCAACATAAACTCTTTGAAAGGTTTCAGGATTATTGACAGGATAAAGAACAAGCTTGAATCAGAGTGTCCCGGAATTGTCTCTTGCGCCGATATTCTCACTATTGCAGCAAGAGATGCTGTGATTCTGGTTGGTGGACCTTATTGGGATGTTCCTCTAGGAAGAAAGGACTCTATAACTGCTAGTCCTGAACTTGCAGAAACCAACCTTCCTACTCCAGTTGAAGGCCTTATGTCTATCATTTCCAAATTTCTTTACCAAGGCCTTTCGGTCACAGATGTGGTAGCTCTTTCAGGAGCTCACACAATCGGTATGACACGGTGTCAGAATGTTCGAGCAAGGATCTATGGTGACTACGAATCAACCTCAGGAATCGACCCTCTTTCAGGGTCATACCTCAGCAGCTTGAGGTCAACTTGCCCCATAGGTGGAGATGAAAATAACATTACAGCCATGGACTATAGATATTGGAAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

258

Amino Acids

28.22

Weight (kDa)

5.25

Isoelectric Point (pI)

31.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 49 - 252 6.2e-63 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 2 cut(s) 173, 647
AcsI RAATTY 2 cut(s) 545, 771
AcuI CTGAAG 1 cut(s) 13
AfiI CCNNNNNNNGG 3 cut(s) 521, 683, 725
AgsI TTSAA 4 cut(s) 67, 316, 356, 521
AhdI GACNNNNNGTC 1 cut(s) 618
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 4 cut(s) 352, 584, 596, 702
AluI AGCT 4 cut(s) 352, 584, 596, 702
Alw21I GWGCWC 1 cut(s) 598
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 2 cut(s) 173, 647
AoxI GGCC 2 cut(s) 523, 559
ApeKI GCWGC 3 cut(s) 191, 404, 699
ApoI RAATTY 2 cut(s) 545, 771
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 1 cut(s) 386
AspS9I GGNCC 2 cut(s) 23, 434
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 1 cut(s) 659
AvaII GGWCC 2 cut(s) 23, 434
AxyI CCTNAGG 1 cut(s) 664
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 598
Bbv12I GWGCWC 1 cut(s) 598
BbvCI CCTCAGC 1 cut(s) 695
BbvI GCAGC 3 cut(s) 178, 416, 711
BccI CCATC 2 cut(s) 68, 236
BcnI CCSGG 1 cut(s) 369
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 3 cut(s) 257, 455, 480
BfmI CTRYAG 1 cut(s) 757
BisI GCNGC 3 cut(s) 192, 405, 700
BlsI GCNGC 3 cut(s) 193, 406, 701
Bme1390I CCNGG 1 cut(s) 369
Bme18I GGWCC 2 cut(s) 23, 434
BmeRI GACNNNNNGTC 1 cut(s) 618
BmgT120I GGNCC 2 cut(s) 23, 434
BmiI GGNNCC 2 cut(s) 6, 25
BmrFI CCNGG 1 cut(s) 369
BmsI GCATC 2 cut(s) 125, 403
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 724
BpuMI CCSGG 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 556, 750
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 3 cut(s) 521, 683, 725
Bse1I ACTGG 2 cut(s) 72, 515
Bse21I CCTNAGG 1 cut(s) 664
BseDI CCNNGG 2 cut(s) 556, 750
BseGI GGATG 2 cut(s) 242, 451
BseLI CCNNNNNNNGG 3 cut(s) 521, 683, 725
BseMII CTCAG 3 cut(s) 189, 678, 709
BseNI ACTGG 2 cut(s) 72, 515
BseXI GCAGC 3 cut(s) 178, 416, 711
BshFI GGCC 2 cut(s) 525, 561
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 2 cut(s) 205, 369
BslFI GGGAC 3 cut(s) 9, 111, 351
BslI CCNNNNNNNGG 3 cut(s) 521, 683, 725
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 3 cut(s) 9, 111, 351
BsnI GGCC 2 cut(s) 525, 561
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 2 cut(s) 178, 639
Bsp19I CCATGG 1 cut(s) 750
BspANI GGCC 2 cut(s) 525, 561
BspCNI CTCAG 3 cut(s) 188, 677, 708
BspLI GGNNCC 2 cut(s) 6, 25
BspPI GGATC 2 cut(s) 173, 647
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 2 cut(s) 72, 515
BssECI CCNNGG 2 cut(s) 556, 750
BssMI GATC 2 cut(s) 178, 639
BssT1I CCWWGG 2 cut(s) 556, 750
Bst4CI ACNGT 2 cut(s) 224, 618
BstAPI GCANNNNNTGC 1 cut(s) 413
BstDEI CTNAG 3 cut(s) 175, 664, 695
BstDSI CCRYGG 1 cut(s) 750
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 242, 451
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 2 cut(s) 181, 642
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 178, 639
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 367
BstSFI CTRYAG 1 cut(s) 757
BstV1I GCAGC 3 cut(s) 178, 416, 711
BstX2I RGATCY 2 cut(s) 178, 639
BstYI RGATCY 2 cut(s) 178, 639
Bsu36I CCTNAGG 1 cut(s) 664
BsuRI GGCC 2 cut(s) 525, 561
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 2 cut(s) 242, 451
CfoI GCGC 1 cut(s) 386
Cfr13I GGNCC 2 cut(s) 23, 434
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 3 cut(s) 43, 218, 751
CviJI RGCY 8 cut(s) 293, 352, 525, 561, 584, 596, 702, 749
CviKI_1 RGCY 8 cut(s) 293, 352, 525, 561, 584, 596, 702, 749
DdeI CTNAG 3 cut(s) 175, 664, 695
DpnI GATC 2 cut(s) 180, 641
DpnII GATC 2 cut(s) 178, 639
DriI GACNNNNNGTC 1 cut(s) 618
Eam1105I GACNNNNNGTC 1 cut(s) 618
Ecl136II GAGCTC 1 cut(s) 596
Eco130I CCWWGG 2 cut(s) 556, 750
Eco147I AGGCCT 2 cut(s) 525, 561
Eco24I GRGCYC 1 cut(s) 598
Eco47I GGWCC 2 cut(s) 23, 434
Eco53kI GAGCTC 1 cut(s) 596
Eco57I CTGAAG 1 cut(s) 13
Eco81I CCTNAGG 1 cut(s) 664
EcoICRI GAGCTC 1 cut(s) 596
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoT14I CCWWGG 2 cut(s) 556, 750
EcoT22I ATGCAT 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 2 cut(s) 556, 750
FaeI CATG 3 cut(s) 46, 221, 754
FaqI GGGAC 3 cut(s) 9, 111, 351
FatI CATG 3 cut(s) 42, 217, 750
Fnu4HI GCNGC 3 cut(s) 192, 405, 700
FokI GGATG 2 cut(s) 249, 458
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 3 cut(s) 192, 405, 700
FspBI CTAG 3 cut(s) 257, 455, 480
GlaI GCGC 1 cut(s) 385
GluI GCNGC 3 cut(s) 192, 405, 700
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 2 cut(s) 525, 561
HapII CCGG 2 cut(s) 205, 369
HhaI GCGC 1 cut(s) 386
Hin1II CATG 3 cut(s) 46, 221, 754
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HincII GTYRAC 1 cut(s) 711
HindII GTYRAC 1 cut(s) 711
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 6 cut(s) 33, 356, 421, 467, 656, 669
HpaII CCGG 2 cut(s) 205, 369
HphI GGTGA 1 cut(s) 659
Hpy166II GTNNAC 3 cut(s) 77, 434, 711
Hpy188I TCNGA 4 cut(s) 32, 178, 361, 624
Hpy188III TCNNGA 5 cut(s) 64, 325, 485, 591, 666
Hpy8I GTNNAC 3 cut(s) 77, 434, 711
HpyAV CCTTC 5 cut(s) 18, 37, 283, 515, 515
HpyCH4III ACNGT 2 cut(s) 224, 618
HpyCH4V TGCA 4 cut(s) 83, 116, 404, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 3 cut(s) 175, 664, 695
Hsp92II CATG 3 cut(s) 46, 221, 754
HspAI GCGC 1 cut(s) 384
Kzo9I GATC 2 cut(s) 178, 639
LmnI GCTCC 1 cut(s) 593
Lsp1109I GCAGC 3 cut(s) 178, 416, 711
LweI GCATC 2 cut(s) 125, 403
MaeI CTAG 3 cut(s) 257, 455, 480
MaeIII GTNAC 4 cut(s) 86, 207, 568, 647
MalI GATC 2 cut(s) 180, 641
MboI GATC 2 cut(s) 178, 639
MboII GAAGA 2 cut(s) 298, 471
MflI RGATCY 2 cut(s) 178, 639
MhlI GDGCHC 1 cut(s) 598
MluCI AATT 4 cut(s) 121, 372, 545, 771
MlyI GAGTC 2 cut(s) 27, 461
MnlI CCTC 7 cut(s) 102, 192, 462, 673, 687, 699, 704
Mph1103I ATGCAT 1 cut(s) 118
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 1 cut(s) 98
MslI CAYNNNNRTG 2 cut(s) 216, 575
MspI CCGG 2 cut(s) 205, 369
MspR9I CCNGG 1 cut(s) 369
MwoI GCNNNNNNNGC 1 cut(s) 413
NciI CCSGG 1 cut(s) 369
NcoI CCATGG 1 cut(s) 750
NdeII GATC 2 cut(s) 178, 639
NlaIII CATG 3 cut(s) 46, 221, 754
NlaIV GGNNCC 2 cut(s) 6, 25
NmuCI GTSAC 3 cut(s) 86, 568, 647
NsiI ATGCAT 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 575
PceI AGGCCT 2 cut(s) 525, 561
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 4 cut(s) 356, 421, 656, 669
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 3 cut(s) 193, 406, 701
PleI GAGTC 2 cut(s) 27, 461
PpsI GAGTC 2 cut(s) 27, 461
Psp124BI GAGCTC 1 cut(s) 598
PspN4I GGNNCC 2 cut(s) 6, 25
PspPI GGNCC 2 cut(s) 23, 434
PsuI RGATCY 2 cut(s) 178, 639
RseI CAYNNNNRTG 2 cut(s) 216, 575
SacI GAGCTC 1 cut(s) 598
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 3 cut(s) 192, 405, 700
Sau3AI GATC 2 cut(s) 178, 639
Sau96I GGNCC 2 cut(s) 23, 434
SchI GAGTC 2 cut(s) 27, 461
ScrFI CCNGG 1 cut(s) 369
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 2 cut(s) 125, 403
SfcI CTRYAG 1 cut(s) 757
SinI GGWCC 2 cut(s) 23, 434
SmiMI CAYNNNNRTG 2 cut(s) 216, 575
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 4 cut(s) 121, 372, 545, 771
SseBI AGGCCT 2 cut(s) 525, 561
SspMI CTAG 3 cut(s) 257, 455, 480
SstI GAGCTC 1 cut(s) 598
StuI AGGCCT 2 cut(s) 525, 561
StyD4I CCNGG 1 cut(s) 367
StyI CCWWGG 2 cut(s) 556, 750
TaaI ACNGT 2 cut(s) 224, 618
TaqI TCGA 2 cut(s) 631, 672
TaqII GACCGA 1 cut(s) 556
TasI AATT 4 cut(s) 121, 372, 545, 771
TfiI GAWTC 4 cut(s) 356, 421, 656, 669
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 3 cut(s) 86, 568, 647
TseI GCWGC 3 cut(s) 191, 404, 699
Tsp45I GTSAC 3 cut(s) 86, 568, 647
TspDTI ATGAA 2 cut(s) 31, 747
VpaK11BI GGWCC 2 cut(s) 23, 434
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 2 cut(s) 545, 771
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 3 cut(s) 257, 455, 480
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.